Wall clock time and date at job start Wed Apr 1 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 119.99749 * 2 1 4 4 C 1.38238 * 119.99572 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00368 * 359.97438 * 4 3 2 7 7 C 1.38239 * 119.99640 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.99741 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46803 * 90.00442 * 8 7 6 10 10 O 1.21276 * 120.00148 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99428 * 179.97438 * 9 8 7 12 12 C 1.46595 * 119.69071 * 0.02562 * 11 9 8 13 13 C 1.52265 * 110.70264 * 227.42021 * 12 11 9 14 14 C 1.51518 * 108.21969 * 309.52043 * 13 12 11 15 15 H 1.09001 * 108.81976 * 305.86706 * 14 13 12 16 16 C 1.55365 * 107.78304 * 64.17554 * 14 13 12 17 17 H 1.09006 * 111.50590 * 51.17449 * 16 14 13 18 18 C 1.53743 * 100.22128 * 169.06019 * 16 14 13 19 19 C 1.55284 * 101.84522 * 320.90272 * 18 16 14 20 20 N 1.45473 * 117.33783 * 181.20732 * 14 13 12 21 21 C 1.36938 * 126.40714 * 30.61514 * 20 14 13 22 22 H 1.08004 * 119.99686 * 0.02562 * 21 20 14 23 23 C 1.38806 * 120.00185 * 180.02562 * 21 20 14 24 24 N 1.31619 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46876 * 59.99977 * 25 23 21 27 27 H 1.48500 * 109.47108 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46896 * 300.00126 * 25 23 21 29 29 C 1.47721 * 119.68266 * 179.97438 * 11 9 8 30 30 C 1.38234 * 119.99904 * 180.23225 * 2 1 3 31 31 H 1.08999 * 109.46714 * 89.99937 * 1 2 3 32 32 H 1.08996 * 109.46852 * 210.00076 * 1 2 3 33 33 H 1.08991 * 109.46986 * 330.00401 * 1 2 3 34 34 H 1.07998 * 120.00546 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47359 * 269.97793 * 5 4 3 36 36 H 1.09002 * 109.46898 * 29.97720 * 5 4 3 37 37 H 1.08997 * 109.47030 * 149.97531 * 5 4 3 38 38 H 1.07995 * 120.00257 * 180.02562 * 6 4 3 39 39 H 1.08997 * 109.47159 * 330.00297 * 8 7 6 40 40 H 1.09004 * 109.46971 * 210.00150 * 8 7 6 41 41 H 1.08997 * 109.25469 * 348.09220 * 12 11 9 42 42 H 1.09009 * 109.25434 * 107.51953 * 12 11 9 43 43 H 1.08998 * 110.00400 * 189.46553 * 13 12 11 44 44 H 1.09000 * 108.89703 * 68.93085 * 13 12 11 45 45 H 1.09004 * 110.95494 * 202.76227 * 18 16 14 46 46 H 1.09000 * 110.95593 * 79.04058 * 18 16 14 47 47 H 1.08998 * 109.92391 * 263.14327 * 19 18 16 48 48 H 1.08999 * 109.92219 * 141.83522 * 19 18 16 49 49 H 0.97001 * 120.00322 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.07149 * 8.75545 * 29 11 9 51 51 H 1.08996 * 110.16365 * 247.21775 * 29 11 9 52 52 H 1.08004 * 120.00111 * 0.03787 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0016 8 6 4.3341 -2.5023 0.0022 9 6 4.5846 -2.9370 1.4233 10 8 4.1905 -2.2540 2.3447 11 7 5.2465 -4.0847 1.6700 12 6 5.7203 -4.9046 0.5510 13 6 5.3532 -6.3672 0.7620 14 6 5.8013 -6.7724 2.1515 15 1 6.8603 -6.5391 2.2614 16 6 4.9849 -5.9369 3.1758 17 1 3.9148 -5.9953 2.9768 18 6 5.3514 -6.6677 4.4779 19 6 5.3590 -8.1513 4.0193 20 7 5.5693 -8.1514 2.5527 21 6 5.5484 -9.2450 1.7288 22 1 5.7153 -9.1254 0.6684 23 6 5.3126 -10.5070 2.2564 24 7 5.1086 -10.6526 3.5485 25 14 5.2833 -11.9987 1.1323 26 1 6.5975 -12.1332 0.4540 27 1 5.0142 -13.2185 1.9354 28 1 4.2157 -11.8303 0.1141 29 6 5.4888 -4.5040 3.0656 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5137 34 1 1.6582 2.1325 -0.0004 35 1 4.5165 2.8160 -1.0278 36 1 3.7446 3.2623 0.5127 37 1 5.2861 2.3723 0.5146 38 1 5.3517 0.0000 0.0024 39 1 5.2867 -2.3720 -0.5112 40 1 3.7452 -3.2620 -0.5117 41 1 5.2689 -4.5459 -0.3740 42 1 6.8047 -4.8202 0.4773 43 1 5.8504 -6.9878 0.0165 44 1 4.2721 -6.4759 0.6747 45 1 4.5952 -6.5006 5.2449 46 1 6.3368 -6.3639 4.8314 47 1 4.4035 -8.6185 4.2574 48 1 6.1706 -8.6878 4.5109 49 1 4.9442 -11.5346 3.9172 50 1 4.9376 -3.8598 3.7507 51 1 6.5545 -4.4636 3.2904 52 1 1.6582 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036809041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:49 Heat of formation + Delta-G solvation = 6.128910 kcal Electronic energy + Delta-G solvation = -30020.946290 eV Core-core repulsion = 26178.247242 eV Total energy + Delta-G solvation = -3842.699048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.47968 -39.53060 -38.15034 -35.38588 -33.71590 -33.65908 -32.66083 -31.60986 -29.96873 -28.72930 -27.85511 -27.01476 -26.83158 -24.89422 -23.47328 -22.36116 -21.26502 -20.87695 -20.07331 -19.68258 -18.71504 -17.18681 -16.46919 -16.27656 -16.10139 -15.71897 -15.12612 -14.94055 -14.44847 -14.35660 -14.16339 -13.93148 -13.69255 -13.41387 -13.36567 -13.16929 -13.06156 -12.83735 -12.72903 -12.65996 -12.42661 -12.34789 -11.85197 -11.67518 -11.61281 -11.47341 -11.41855 -11.12611 -11.10528 -10.84436 -10.80718 -10.68925 -10.18754 -10.10890 -9.89602 -9.67090 -9.64437 -9.45985 -8.68679 -8.63734 -8.63328 -8.48580 -6.85418 -5.72960 -3.06378 1.23822 1.28788 2.72069 3.07405 3.38347 3.42647 3.44250 3.64141 4.46668 4.47813 4.59717 4.63701 4.66158 4.96317 4.99971 5.09545 5.10977 5.13789 5.17453 5.25385 5.33839 5.35632 5.36919 5.41323 5.43281 5.45187 5.54023 5.58427 5.61727 5.65275 5.68589 5.80957 5.88863 6.00917 6.03407 6.06518 6.15817 6.17467 6.22848 6.35175 6.42354 6.43303 6.50067 6.53118 6.61172 6.62937 6.83904 6.92857 7.05601 7.51031 7.53816 7.60506 7.79397 8.22940 8.27950 9.17654 9.81379 10.49653 11.39465 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.002275 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.592373 B =12302.340441 C =12641.066202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.514 3.486 10 O -0.539 6.539 11 N -0.608 5.608 12 C 0.111 3.889 13 C -0.132 4.132 14 C 0.169 3.831 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.078 0.922 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.127 3.873 30 C -0.110 4.110 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.253 0.747 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 22.518 -8.389 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.054 4.054 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.342 5.342 12 C -0.012 4.012 13 C -0.171 4.171 14 C 0.060 3.940 15 H 0.037 0.963 16 C -0.144 4.144 17 H 0.096 0.904 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.005 3.995 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.107 0.893 51 H 0.085 0.915 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.929 22.598 -7.870 24.107 hybrid contribution 0.048 -1.106 -0.585 1.252 sum -2.880 21.492 -8.455 23.274 Atomic orbital electron populations 1.20780 0.91262 1.02829 1.02147 1.19834 0.95951 0.93021 0.99475 1.20846 0.93484 0.97372 1.02483 1.19818 0.93808 0.95124 0.99682 1.20770 0.99950 0.94109 1.02090 1.20799 0.99407 0.91433 1.01265 1.19266 0.93505 0.93570 0.99072 1.20747 1.02089 0.96058 0.95458 1.20470 0.77618 0.80736 0.91036 1.90696 1.50905 1.53727 1.46258 1.48338 1.56260 1.21903 1.07674 1.21502 0.99398 0.91940 0.88349 1.21598 1.02197 0.93414 0.99909 1.20599 0.95436 0.86434 0.91529 0.96344 1.22628 1.00513 0.92999 0.98275 0.90378 1.22701 1.00106 0.98891 0.95720 1.21533 1.00941 0.89026 0.83205 1.44196 1.83787 1.00270 1.03644 1.18937 1.42068 0.84461 0.90006 0.90447 1.24796 1.02071 0.97493 0.96075 1.69928 1.54765 1.22025 1.10151 0.86231 0.77808 0.82453 0.79452 1.21200 1.21635 1.21211 1.21573 1.00554 0.95714 0.81629 1.20844 0.93385 0.97632 1.00959 0.91279 0.91464 0.91657 0.86396 0.91324 0.91669 0.91572 0.86419 0.88046 0.87872 0.90184 0.91748 0.90435 0.91563 0.92078 0.92351 0.92727 0.94353 0.93689 0.89327 0.91456 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.27 9.36 -39.58 -0.37 -1.64 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 5 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 6 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 7 C -0.05 -0.64 4.37 -104.62 -0.46 -1.10 16 8 C -0.10 -1.11 4.16 -29.03 -0.12 -1.23 16 9 C 0.51 7.37 7.67 -10.98 -0.08 7.29 16 10 O -0.54 -9.69 15.39 5.56 0.09 -9.60 16 11 N -0.61 -8.59 3.00 -173.49 -0.52 -9.11 16 12 C 0.11 1.38 6.17 -4.37 -0.03 1.35 16 13 C -0.13 -2.14 5.36 -27.86 -0.15 -2.28 16 14 C 0.17 3.29 2.58 -67.98 -0.18 3.11 16 15 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 16 C -0.12 -2.20 2.83 -89.34 -0.25 -2.45 16 17 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 18 C -0.14 -2.52 6.56 -25.13 -0.16 -2.68 16 19 C 0.18 4.25 5.45 -1.91 -0.01 4.23 16 20 N -0.59 -14.64 3.35 -163.09 -0.55 -15.19 16 21 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 22 H 0.08 1.97 7.21 -52.48 -0.38 1.60 16 23 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -26.78 10.44 55.49 0.58 -26.21 16 25 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.13 1.96 6.01 -3.74 -0.02 1.94 16 30 C -0.11 -1.30 9.36 -39.58 -0.37 -1.67 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 0.85 7.93 -51.93 -0.41 0.44 16 40 H 0.10 0.95 7.49 -51.93 -0.39 0.56 16 41 H 0.08 0.76 5.83 -51.93 -0.30 0.46 16 42 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 44 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 47 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 48 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 50 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 51 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 52 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -32.51 405.32 -11.54 -44.05 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.89 Total: 0.61 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.33 Total: -7.37 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.49 Total: -50.50 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.51 -11.54 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.177 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds