Wall clock time and date at job start Wed Apr 1 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 119.99749 * 2 1 4 4 C 1.38238 * 119.99572 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00368 * 359.97438 * 4 3 2 7 7 C 1.38239 * 119.99640 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.99741 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46803 * 90.00442 * 8 7 6 10 10 O 1.21276 * 120.00148 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99428 * 179.97438 * 9 8 7 12 12 C 1.46595 * 119.69071 * 0.02562 * 11 9 8 13 13 C 1.52265 * 110.70264 * 227.42021 * 12 11 9 14 14 C 1.51518 * 108.21969 * 309.52043 * 13 12 11 15 15 H 1.09001 * 108.81976 * 305.86706 * 14 13 12 16 16 C 1.55365 * 107.78304 * 64.17554 * 14 13 12 17 17 H 1.09006 * 111.50590 * 51.17449 * 16 14 13 18 18 C 1.53743 * 100.22128 * 169.06019 * 16 14 13 19 19 C 1.55284 * 101.84522 * 320.90272 * 18 16 14 20 20 N 1.45473 * 117.33783 * 181.20732 * 14 13 12 21 21 C 1.36938 * 126.40714 * 30.61514 * 20 14 13 22 22 H 1.08004 * 119.99686 * 0.02562 * 21 20 14 23 23 C 1.38806 * 120.00185 * 180.02562 * 21 20 14 24 24 N 1.31619 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46876 * 59.99977 * 25 23 21 27 27 H 1.48500 * 109.47108 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46896 * 300.00126 * 25 23 21 29 29 C 1.47721 * 119.68266 * 179.97438 * 11 9 8 30 30 C 1.38234 * 119.99904 * 180.23225 * 2 1 3 31 31 H 1.08999 * 109.46714 * 89.99937 * 1 2 3 32 32 H 1.08996 * 109.46852 * 210.00076 * 1 2 3 33 33 H 1.08991 * 109.46986 * 330.00401 * 1 2 3 34 34 H 1.07998 * 120.00546 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47359 * 269.97793 * 5 4 3 36 36 H 1.09002 * 109.46898 * 29.97720 * 5 4 3 37 37 H 1.08997 * 109.47030 * 149.97531 * 5 4 3 38 38 H 1.07995 * 120.00257 * 180.02562 * 6 4 3 39 39 H 1.08997 * 109.47159 * 330.00297 * 8 7 6 40 40 H 1.09004 * 109.46971 * 210.00150 * 8 7 6 41 41 H 1.08997 * 109.25469 * 348.09220 * 12 11 9 42 42 H 1.09009 * 109.25434 * 107.51953 * 12 11 9 43 43 H 1.08998 * 110.00400 * 189.46553 * 13 12 11 44 44 H 1.09000 * 108.89703 * 68.93085 * 13 12 11 45 45 H 1.09004 * 110.95494 * 202.76227 * 18 16 14 46 46 H 1.09000 * 110.95593 * 79.04058 * 18 16 14 47 47 H 1.08998 * 109.92391 * 263.14327 * 19 18 16 48 48 H 1.08999 * 109.92219 * 141.83522 * 19 18 16 49 49 H 0.97001 * 120.00322 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.07149 * 8.75545 * 29 11 9 51 51 H 1.08996 * 110.16365 * 247.21775 * 29 11 9 52 52 H 1.08004 * 120.00111 * 0.03787 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0016 8 6 4.3341 -2.5023 0.0022 9 6 4.5846 -2.9370 1.4233 10 8 4.1905 -2.2540 2.3447 11 7 5.2465 -4.0847 1.6700 12 6 5.7203 -4.9046 0.5510 13 6 5.3532 -6.3672 0.7620 14 6 5.8013 -6.7724 2.1515 15 1 6.8603 -6.5391 2.2614 16 6 4.9849 -5.9369 3.1758 17 1 3.9148 -5.9953 2.9768 18 6 5.3514 -6.6677 4.4779 19 6 5.3590 -8.1513 4.0193 20 7 5.5693 -8.1514 2.5527 21 6 5.5484 -9.2450 1.7288 22 1 5.7153 -9.1254 0.6684 23 6 5.3126 -10.5070 2.2564 24 7 5.1086 -10.6526 3.5485 25 14 5.2833 -11.9987 1.1323 26 1 6.5975 -12.1332 0.4540 27 1 5.0142 -13.2185 1.9354 28 1 4.2157 -11.8303 0.1141 29 6 5.4888 -4.5040 3.0656 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5137 34 1 1.6582 2.1325 -0.0004 35 1 4.5165 2.8160 -1.0278 36 1 3.7446 3.2623 0.5127 37 1 5.2861 2.3723 0.5146 38 1 5.3517 0.0000 0.0024 39 1 5.2867 -2.3720 -0.5112 40 1 3.7452 -3.2620 -0.5117 41 1 5.2689 -4.5459 -0.3740 42 1 6.8047 -4.8202 0.4773 43 1 5.8504 -6.9878 0.0165 44 1 4.2721 -6.4759 0.6747 45 1 4.5952 -6.5006 5.2449 46 1 6.3368 -6.3639 4.8314 47 1 4.4035 -8.6185 4.2574 48 1 6.1706 -8.6878 4.5109 49 1 4.9442 -11.5346 3.9172 50 1 4.9376 -3.8598 3.7507 51 1 6.5545 -4.4636 3.2904 52 1 1.6582 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036809041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:48 Heat of formation + Delta-G solvation = -10.443826 kcal Electronic energy + Delta-G solvation = -30021.664938 eV Core-core repulsion = 26178.247242 eV Total energy + Delta-G solvation = -3843.417696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.61211 -40.49652 -39.47981 -36.80974 -34.74847 -34.35307 -34.27851 -33.04536 -31.50942 -30.11462 -28.90557 -27.83704 -27.53872 -26.66737 -24.91789 -23.71023 -22.24299 -21.82375 -21.60367 -21.07573 -19.86072 -18.66878 -17.83781 -17.26182 -17.00608 -16.89942 -16.72950 -16.16862 -15.93332 -15.63974 -15.20684 -15.11555 -14.78830 -14.76898 -14.19583 -14.13629 -13.98621 -13.87653 -13.80828 -13.77280 -13.35604 -13.33131 -13.22655 -13.13774 -13.00924 -12.64784 -12.52637 -12.51000 -12.32315 -12.10902 -12.02347 -11.86315 -11.82958 -11.75771 -11.59931 -11.50175 -10.99818 -10.80568 -10.69115 -9.66803 -9.48260 -9.39768 -8.86865 -7.82255 -5.16906 0.43916 0.50506 1.46572 1.49588 1.55497 1.64250 2.00555 2.51538 2.83130 3.36362 3.44169 3.66870 3.71548 3.87673 3.88432 3.95400 3.96970 4.02493 4.20694 4.25130 4.26169 4.37015 4.41389 4.44980 4.53206 4.54501 4.61708 4.66461 4.69670 4.72126 4.72983 4.81516 4.82925 4.86582 4.88255 4.92867 5.01698 5.05645 5.07946 5.08772 5.23266 5.30165 5.38350 5.47255 5.54824 5.57478 5.64663 5.65956 5.67749 5.75288 5.76450 6.17660 6.21399 6.43226 7.09867 7.18697 7.80589 8.49685 9.29619 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.002275 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.592373 B =12302.340441 C =12641.066202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.127 4.127 7 C -0.069 4.069 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.117 3.883 13 C -0.126 4.126 14 C 0.158 3.842 15 H 0.023 0.977 16 C -0.108 4.108 17 H 0.058 0.942 18 C -0.122 4.122 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.090 0.910 23 C -0.073 4.073 24 N -0.956 5.956 25 Si 0.976 3.024 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.276 1.276 29 C 0.136 3.864 30 C -0.133 4.133 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.015 0.985 48 H 0.004 0.996 49 H 0.244 0.756 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 24.798 -10.718 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.093 4.093 5 C -0.167 4.167 6 C -0.145 4.145 7 C -0.069 4.069 8 C -0.136 4.136 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.342 5.342 12 C -0.005 4.005 13 C -0.165 4.165 14 C 0.051 3.949 15 H 0.040 0.960 16 C -0.129 4.129 17 H 0.077 0.923 18 C -0.161 4.161 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.107 0.893 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.804 3.196 26 H -0.201 1.201 27 H -0.227 1.227 28 H -0.202 1.202 29 C 0.013 3.987 30 C -0.151 4.151 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.034 0.966 48 H 0.023 0.977 49 H 0.053 0.947 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.289 24.911 -10.245 27.032 hybrid contribution -0.155 -1.763 0.158 1.777 sum -2.444 23.148 -10.087 25.368 Atomic orbital electron populations 1.20811 0.89815 1.03163 1.03072 1.20182 0.97269 0.93038 0.98982 1.21154 0.93811 0.98028 1.02248 1.20211 0.94225 0.96113 0.98778 1.20809 0.99813 0.92962 1.03139 1.21053 1.00126 0.91682 1.01672 1.19474 0.93709 0.94327 0.99421 1.20799 1.03791 0.95977 0.93073 1.21084 0.76372 0.80087 0.92162 1.90681 1.52411 1.54976 1.47886 1.48400 1.56212 1.22184 1.07419 1.21610 1.00947 0.88924 0.89033 1.21531 1.01196 0.96243 0.97519 1.20853 0.95791 0.84018 0.94258 0.95967 1.22450 0.99110 0.94449 0.96883 0.92331 1.22571 1.01806 0.95084 0.96611 1.21290 0.97497 0.92003 0.83474 1.44490 1.83620 1.02092 1.03801 1.19390 1.40216 0.85278 0.90884 0.89256 1.25652 1.02958 1.00461 0.97427 1.70166 1.56640 1.21807 1.11921 0.85188 0.78220 0.78574 0.77603 1.20138 1.22672 1.20240 1.21394 1.01112 0.93366 0.82836 1.21044 0.93854 0.98149 1.02067 0.89993 0.91820 0.90622 0.84556 0.89935 0.90797 0.91346 0.85366 0.85060 0.86102 0.86470 0.89703 0.90286 0.92984 0.90719 0.90355 0.96621 0.97747 0.94659 0.90033 0.89955 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.98 16 2 C -0.09 -1.94 5.88 -19.86 -0.12 -2.06 16 3 C -0.13 -2.56 9.36 22.27 0.21 -2.35 16 4 C -0.09 -1.79 5.88 -19.86 -0.12 -1.90 16 5 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 6 C -0.13 -2.65 9.36 22.27 0.21 -2.44 16 7 C -0.07 -1.52 4.37 -19.86 -0.09 -1.61 16 8 C -0.10 -1.79 4.16 29.10 0.12 -1.67 16 9 C 0.51 13.58 7.67 87.66 0.67 14.25 16 10 O -0.58 -20.24 15.39 -3.02 -0.05 -20.29 16 11 N -0.61 -15.59 3.00 -821.20 -2.46 -18.05 16 12 C 0.12 2.46 6.17 86.12 0.53 2.99 16 13 C -0.13 -3.81 5.36 29.87 0.16 -3.65 16 14 C 0.16 6.01 2.58 45.51 0.12 6.13 16 15 H 0.02 0.87 7.96 -2.39 -0.02 0.85 16 16 C -0.11 -3.78 2.83 -9.97 -0.03 -3.81 16 17 H 0.06 2.27 8.12 -2.38 -0.02 2.26 16 18 C -0.12 -4.54 6.56 31.63 0.21 -4.33 16 19 C 0.18 9.10 5.45 86.84 0.47 9.57 16 20 N -0.62 -30.79 3.35 -669.89 -2.24 -33.04 16 21 C -0.23 -12.38 9.88 84.03 0.83 -11.55 16 22 H 0.09 4.49 7.21 -2.91 -0.02 4.47 16 23 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 24 N -0.96 -57.98 10.44 21.65 0.23 -57.76 16 25 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 C 0.14 3.92 6.01 85.91 0.52 4.44 16 30 C -0.13 -3.01 9.36 22.27 0.21 -2.80 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.07 0.96 8.08 -2.39 -0.02 0.95 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 37 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 38 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.13 1.62 7.93 -2.39 -0.02 1.60 16 40 H 0.12 1.80 7.49 -2.39 -0.02 1.78 16 41 H 0.12 1.66 5.83 -2.39 -0.01 1.64 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.08 2.38 7.62 -2.39 -0.02 2.36 16 44 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 45 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 46 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 47 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 48 H 0.00 0.24 7.77 -2.39 -0.02 0.22 16 49 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.08 2.53 7.00 -2.39 -0.02 2.51 16 51 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 52 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -73.91 405.32 4.18 -69.72 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.89 Total: 18.18 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.80 Total: -6.13 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.48 Total: -108.85 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -73.91 4.18 -69.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.279 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds