Wall clock time and date at job start Wed Apr 1 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 119.99891 * 2 1 4 4 C 1.38237 * 119.99816 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99973 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99949 * 359.97438 * 4 3 2 7 7 C 1.38226 * 119.99951 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99937 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47464 * 89.99935 * 8 7 6 10 10 O 1.21280 * 119.99764 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00361 * 180.02562 * 9 8 7 12 12 C 1.45947 * 118.25869 * 0.02562 * 11 9 8 13 13 C 1.53143 * 108.20242 * 148.95978 * 12 11 9 14 14 C 1.52826 * 108.60397 * 61.92886 * 13 12 11 15 15 H 1.08998 * 109.63051 * 62.92682 * 14 13 12 16 16 C 1.51789 * 111.59689 * 301.25819 * 14 13 12 17 17 H 1.09004 * 107.16099 * 143.18811 * 16 14 13 18 18 C 1.54126 * 105.57000 * 256.31484 * 16 14 13 19 19 C 1.54221 * 103.28792 * 334.26485 * 18 16 14 20 20 N 1.46882 * 106.56170 * 27.30293 * 19 18 16 21 21 C 1.36942 * 125.45764 * 161.34927 * 20 19 18 22 22 H 1.07989 * 120.00268 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99296 * 0.02562 * 21 20 19 24 24 N 1.31618 * 120.00921 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99671 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46684 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47312 * 119.99614 * 25 23 21 28 28 H 1.48494 * 109.47136 * 240.00174 * 25 23 21 29 29 C 1.44368 * 118.26232 * 180.02562 * 11 9 8 30 30 C 1.38237 * 120.00651 * 0.25526 * 7 6 4 31 31 H 1.08992 * 109.47116 * 90.00340 * 1 2 3 32 32 H 1.09006 * 109.47242 * 210.00155 * 1 2 3 33 33 H 1.09004 * 109.46996 * 329.99631 * 1 2 3 34 34 H 1.07994 * 119.99935 * 359.97438 * 3 2 1 35 35 H 1.08992 * 109.47712 * 269.98529 * 5 4 3 36 36 H 1.09007 * 109.46955 * 29.98846 * 5 4 3 37 37 H 1.09004 * 109.47056 * 149.98129 * 5 4 3 38 38 H 1.07997 * 119.99535 * 179.97438 * 6 4 3 39 39 H 1.09005 * 109.46807 * 329.99526 * 8 7 6 40 40 H 1.09005 * 109.47454 * 210.00139 * 8 7 6 41 41 H 1.08997 * 109.71703 * 29.27930 * 12 11 9 42 42 H 1.09003 * 109.74822 * 268.65479 * 12 11 9 43 43 H 1.09000 * 109.61524 * 302.19777 * 13 12 11 44 44 H 1.09000 * 109.76518 * 181.75627 * 13 12 11 45 45 H 1.09002 * 110.68575 * 215.81079 * 18 16 14 46 46 H 1.09001 * 110.65480 * 92.70412 * 18 16 14 47 47 H 1.09002 * 110.04871 * 268.01168 * 19 18 16 48 48 H 1.09005 * 110.04397 * 146.59328 * 19 18 16 49 49 H 0.96995 * 120.00569 * 180.02562 * 24 23 21 50 50 H 1.09007 * 107.88764 * 296.79236 * 29 11 9 51 51 H 1.08997 * 107.88864 * 52.89533 * 29 11 9 52 52 H 1.07993 * 120.00583 * 179.72794 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0016 8 6 4.3340 -2.5022 0.0022 9 6 4.5847 -2.9370 1.4231 10 8 4.1907 -2.2540 2.3447 11 7 5.2475 -4.0842 1.6699 12 6 5.7060 -4.8757 0.5326 13 6 6.9913 -5.6009 0.9417 14 6 6.6718 -6.5416 2.1030 15 1 5.9601 -7.2993 1.7753 16 6 6.1038 -5.7884 3.2921 17 1 5.3428 -6.4255 3.7427 18 6 7.2552 -5.6975 4.3126 19 6 8.1356 -6.9145 3.9630 20 7 7.9209 -7.1906 2.5364 21 6 8.7495 -7.9323 1.7373 22 1 8.5055 -8.0795 0.6957 23 6 9.9030 -8.4948 2.2663 24 7 10.2006 -8.3150 3.5357 25 14 11.0338 -9.5060 1.1761 26 1 10.4789 -9.5567 -0.2004 27 1 12.3804 -8.8807 1.1447 28 1 11.1405 -10.8846 1.7173 29 6 5.4663 -4.4650 3.0452 30 6 2.1982 -1.1972 -0.0048 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1324 -0.0004 35 1 4.5164 2.8162 -1.0277 36 1 3.7446 3.2623 0.5129 37 1 5.2861 2.3723 0.5146 38 1 5.3517 0.0000 0.0016 39 1 5.2866 -2.3720 -0.5114 40 1 3.7452 -3.2620 -0.5117 41 1 5.9074 -4.2199 -0.3144 42 1 4.9431 -5.6049 0.2599 43 1 7.7385 -4.8722 1.2561 44 1 7.3738 -6.1767 0.0989 45 1 6.8746 -5.7784 5.3308 46 1 7.8124 -4.7698 4.1821 47 1 7.8361 -7.7762 4.5596 48 1 9.1848 -6.6811 4.1447 49 1 11.0069 -8.7078 3.9052 50 1 6.0958 -3.7043 3.5071 51 1 4.5024 -4.4512 3.5538 52 1 1.6582 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036809042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:53 Heat of formation + Delta-G solvation = 5.603260 kcal Electronic energy + Delta-G solvation = -29962.728173 eV Core-core repulsion = 26120.006331 eV Total energy + Delta-G solvation = -3842.721842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.56918 -39.56297 -38.19929 -35.43944 -33.75826 -33.66530 -32.85965 -31.71130 -29.99622 -28.79147 -27.93902 -27.07784 -26.83751 -25.07480 -23.50762 -22.73700 -21.33865 -20.88278 -20.30675 -19.36343 -17.85740 -17.14192 -17.04734 -16.46100 -16.17609 -15.66773 -15.40628 -14.97989 -14.71749 -14.41534 -14.19578 -13.80852 -13.48029 -13.42051 -13.37133 -13.20947 -13.05297 -12.93767 -12.73522 -12.54141 -12.37796 -12.29699 -11.86340 -11.74528 -11.61161 -11.43971 -11.33122 -11.14353 -11.11812 -10.99155 -10.83138 -10.79285 -10.23945 -10.10340 -9.87076 -9.71401 -9.60613 -9.53861 -8.69618 -8.65172 -8.63811 -8.38797 -6.88704 -5.70828 -3.10307 1.23352 1.28209 2.71473 3.11860 3.36500 3.41659 3.44486 3.64671 4.43277 4.47779 4.58935 4.63205 4.67379 4.99240 5.01173 5.08077 5.11677 5.13747 5.16489 5.19963 5.28472 5.35233 5.36082 5.40499 5.40796 5.42838 5.44595 5.50941 5.62059 5.65316 5.67190 5.82581 5.92140 6.00741 6.05741 6.08116 6.09781 6.20045 6.28245 6.39366 6.42117 6.42688 6.52539 6.56351 6.62419 6.78304 6.87553 6.92333 7.00885 7.49796 7.52226 7.61448 7.82817 8.29072 8.30011 9.18677 9.79368 10.43685 11.35276 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.002190 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.481382 B =12780.178262 C =13016.380989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.102 4.102 9 C 0.507 3.493 10 O -0.537 6.537 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.137 4.137 14 C 0.175 3.825 15 H 0.033 0.967 16 C -0.102 4.102 17 H 0.063 0.937 18 C -0.135 4.135 19 C 0.160 3.840 20 N -0.597 5.597 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.142 3.858 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.093 0.907 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 16.560 -8.494 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.142 4.142 9 C 0.295 3.705 10 O -0.414 6.414 11 N -0.330 5.330 12 C -0.018 4.018 13 C -0.177 4.177 14 C 0.067 3.933 15 H 0.051 0.949 16 C -0.121 4.121 17 H 0.081 0.919 18 C -0.174 4.174 19 C 0.035 3.965 20 N -0.321 5.321 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.743 3.257 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.020 3.980 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.034 0.966 48 H 0.111 0.889 49 H 0.062 0.938 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.453 16.733 -7.934 24.119 hybrid contribution 0.679 -0.789 -0.457 1.137 sum -14.773 15.944 -8.391 23.300 Atomic orbital electron populations 1.20772 0.91303 1.02761 1.02104 1.19823 0.95900 0.93042 0.99635 1.20846 0.93486 0.97371 1.02482 1.19830 0.93804 0.95158 0.99535 1.20778 1.00012 0.94068 1.02136 1.20831 0.99536 0.91441 1.01018 1.19269 0.93493 0.93608 0.99055 1.20738 1.02107 0.96041 0.95287 1.20497 0.78163 0.80730 0.91145 1.90703 1.50940 1.53491 1.46303 1.47308 1.55865 1.22638 1.07164 1.21723 0.97662 0.94692 0.87729 1.22284 0.95202 0.99381 1.00838 1.20232 0.89616 0.92087 0.91382 0.94920 1.20747 0.98463 0.94727 0.98209 0.91892 1.22861 0.96235 1.01331 0.96929 1.21484 0.99580 0.91269 0.84184 1.44519 1.21540 1.59230 1.06794 1.19045 1.00467 1.23328 0.92206 0.90366 1.24802 0.98546 1.00956 0.96280 1.69896 1.26557 1.48855 1.11558 0.86038 0.80692 0.79650 0.79329 1.20517 1.21775 1.21794 1.19916 1.00206 0.96645 0.81277 1.20812 0.93340 0.97540 1.01201 0.91310 0.91555 0.91666 0.86398 0.91283 0.91662 0.91495 0.86324 0.87864 0.87983 0.90605 0.91795 0.91331 0.90445 0.92071 0.92316 0.96636 0.88913 0.93782 0.92407 0.92225 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 6 C -0.11 -1.28 9.36 -39.59 -0.37 -1.65 16 7 C -0.05 -0.64 4.37 -104.62 -0.46 -1.09 16 8 C -0.10 -1.09 4.30 -29.03 -0.12 -1.22 16 9 C 0.51 7.34 7.60 -10.99 -0.08 7.26 16 10 O -0.54 -9.73 15.81 5.56 0.09 -9.64 16 11 N -0.60 -8.64 3.14 -178.12 -0.56 -9.20 16 12 C 0.11 1.34 5.92 -4.27 -0.03 1.31 16 13 C -0.14 -2.28 5.21 -26.75 -0.14 -2.42 16 14 C 0.17 3.39 3.22 -68.21 -0.22 3.17 16 15 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.10 -1.77 2.70 -92.63 -0.25 -2.02 16 17 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 18 C -0.13 -2.53 6.38 -25.50 -0.16 -2.69 16 19 C 0.16 3.80 5.67 -3.20 -0.02 3.79 16 20 N -0.60 -14.51 3.14 -164.82 -0.52 -15.03 16 21 C -0.22 -5.88 9.68 -15.06 -0.15 -6.03 16 22 H 0.08 1.98 7.51 -52.49 -0.39 1.59 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -26.39 10.17 55.49 0.56 -25.83 16 25 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.14 2.27 5.19 -7.16 -0.04 2.23 16 30 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.10 0.92 7.24 -51.93 -0.38 0.55 16 40 H 0.10 0.88 8.00 -51.93 -0.42 0.46 16 41 H 0.08 0.77 6.20 -51.93 -0.32 0.44 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.31 7.64 -51.93 -0.40 0.92 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.49 6.19 -51.93 -0.32 2.17 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 51 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 52 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -31.91 404.38 -11.62 -43.52 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.88 Total: 0.58 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.38 Total: -7.02 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.51 Total: -50.05 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.91 -11.62 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.128 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds