Wall clock time and date at job start Wed Apr 1 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 119.99891 * 2 1 4 4 C 1.38237 * 119.99816 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99973 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99949 * 359.97438 * 4 3 2 7 7 C 1.38226 * 119.99951 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99937 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47464 * 89.99935 * 8 7 6 10 10 O 1.21280 * 119.99764 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00361 * 180.02562 * 9 8 7 12 12 C 1.45947 * 118.25869 * 0.02562 * 11 9 8 13 13 C 1.53143 * 108.20242 * 148.95978 * 12 11 9 14 14 C 1.52826 * 108.60397 * 61.92886 * 13 12 11 15 15 H 1.08998 * 109.63051 * 62.92682 * 14 13 12 16 16 C 1.51789 * 111.59689 * 301.25819 * 14 13 12 17 17 H 1.09004 * 107.16099 * 143.18811 * 16 14 13 18 18 C 1.54126 * 105.57000 * 256.31484 * 16 14 13 19 19 C 1.54221 * 103.28792 * 334.26485 * 18 16 14 20 20 N 1.46882 * 106.56170 * 27.30293 * 19 18 16 21 21 C 1.36942 * 125.45764 * 161.34927 * 20 19 18 22 22 H 1.07989 * 120.00268 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99296 * 0.02562 * 21 20 19 24 24 N 1.31618 * 120.00921 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99671 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46684 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47312 * 119.99614 * 25 23 21 28 28 H 1.48494 * 109.47136 * 240.00174 * 25 23 21 29 29 C 1.44368 * 118.26232 * 180.02562 * 11 9 8 30 30 C 1.38237 * 120.00651 * 0.25526 * 7 6 4 31 31 H 1.08992 * 109.47116 * 90.00340 * 1 2 3 32 32 H 1.09006 * 109.47242 * 210.00155 * 1 2 3 33 33 H 1.09004 * 109.46996 * 329.99631 * 1 2 3 34 34 H 1.07994 * 119.99935 * 359.97438 * 3 2 1 35 35 H 1.08992 * 109.47712 * 269.98529 * 5 4 3 36 36 H 1.09007 * 109.46955 * 29.98846 * 5 4 3 37 37 H 1.09004 * 109.47056 * 149.98129 * 5 4 3 38 38 H 1.07997 * 119.99535 * 179.97438 * 6 4 3 39 39 H 1.09005 * 109.46807 * 329.99526 * 8 7 6 40 40 H 1.09005 * 109.47454 * 210.00139 * 8 7 6 41 41 H 1.08997 * 109.71703 * 29.27930 * 12 11 9 42 42 H 1.09003 * 109.74822 * 268.65479 * 12 11 9 43 43 H 1.09000 * 109.61524 * 302.19777 * 13 12 11 44 44 H 1.09000 * 109.76518 * 181.75627 * 13 12 11 45 45 H 1.09002 * 110.68575 * 215.81079 * 18 16 14 46 46 H 1.09001 * 110.65480 * 92.70412 * 18 16 14 47 47 H 1.09002 * 110.04871 * 268.01168 * 19 18 16 48 48 H 1.09005 * 110.04397 * 146.59328 * 19 18 16 49 49 H 0.96995 * 120.00569 * 180.02562 * 24 23 21 50 50 H 1.09007 * 107.88764 * 296.79236 * 29 11 9 51 51 H 1.08997 * 107.88864 * 52.89533 * 29 11 9 52 52 H 1.07993 * 120.00583 * 179.72794 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0016 8 6 4.3340 -2.5022 0.0022 9 6 4.5847 -2.9370 1.4231 10 8 4.1907 -2.2540 2.3447 11 7 5.2475 -4.0842 1.6699 12 6 5.7060 -4.8757 0.5326 13 6 6.9913 -5.6009 0.9417 14 6 6.6718 -6.5416 2.1030 15 1 5.9601 -7.2993 1.7753 16 6 6.1038 -5.7884 3.2921 17 1 5.3428 -6.4255 3.7427 18 6 7.2552 -5.6975 4.3126 19 6 8.1356 -6.9145 3.9630 20 7 7.9209 -7.1906 2.5364 21 6 8.7495 -7.9323 1.7373 22 1 8.5055 -8.0795 0.6957 23 6 9.9030 -8.4948 2.2663 24 7 10.2006 -8.3150 3.5357 25 14 11.0338 -9.5060 1.1761 26 1 10.4789 -9.5567 -0.2004 27 1 12.3804 -8.8807 1.1447 28 1 11.1405 -10.8846 1.7173 29 6 5.4663 -4.4650 3.0452 30 6 2.1982 -1.1972 -0.0048 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1324 -0.0004 35 1 4.5164 2.8162 -1.0277 36 1 3.7446 3.2623 0.5129 37 1 5.2861 2.3723 0.5146 38 1 5.3517 0.0000 0.0016 39 1 5.2866 -2.3720 -0.5114 40 1 3.7452 -3.2620 -0.5117 41 1 5.9074 -4.2199 -0.3144 42 1 4.9431 -5.6049 0.2599 43 1 7.7385 -4.8722 1.2561 44 1 7.3738 -6.1767 0.0989 45 1 6.8746 -5.7784 5.3308 46 1 7.8124 -4.7698 4.1821 47 1 7.8361 -7.7762 4.5596 48 1 9.1848 -6.6811 4.1447 49 1 11.0069 -8.7078 3.9052 50 1 6.0958 -3.7043 3.5071 51 1 4.5024 -4.4512 3.5538 52 1 1.6582 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036809042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:52 Heat of formation + Delta-G solvation = -10.312356 kcal Electronic energy + Delta-G solvation = -29963.418326 eV Core-core repulsion = 26120.006331 eV Total energy + Delta-G solvation = -3843.411995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.72049 -40.50590 -39.54061 -36.86375 -34.87033 -34.34885 -34.32861 -33.21405 -31.55490 -30.17394 -29.01938 -27.87007 -27.53449 -26.80195 -24.99033 -24.06595 -22.39149 -22.03767 -21.59862 -20.46879 -19.20930 -18.93243 -18.24008 -17.29293 -17.17033 -16.81600 -16.79257 -16.55453 -16.15733 -15.58583 -15.20528 -14.95597 -14.64890 -14.61589 -14.36782 -14.14769 -13.98219 -13.89876 -13.80938 -13.76585 -13.33996 -13.32796 -13.27818 -13.02170 -13.01899 -12.64539 -12.56150 -12.55814 -12.34011 -12.31352 -11.95016 -11.88237 -11.82362 -11.79753 -11.59689 -11.33251 -11.17552 -10.85104 -10.69270 -9.57712 -9.48107 -9.39256 -8.86944 -7.76830 -5.17795 0.44244 0.50957 1.48258 1.48578 1.58665 1.63016 2.02785 2.50670 2.83840 3.35342 3.49865 3.67321 3.67805 3.76091 3.80415 3.88171 3.96837 4.04557 4.10523 4.25143 4.26222 4.37029 4.45417 4.47685 4.51880 4.54908 4.58848 4.62686 4.70243 4.72482 4.75044 4.79773 4.82399 4.86651 4.90975 4.91920 5.02366 5.04261 5.08600 5.13814 5.29938 5.33976 5.38783 5.50433 5.54895 5.61597 5.65166 5.66686 5.68334 5.75687 5.82840 6.17910 6.29272 6.40073 7.13449 7.18174 7.81885 8.45075 9.28476 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.002190 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.481382 B =12780.178262 C =13016.380989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.069 4.069 8 C -0.095 4.095 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.127 4.127 14 C 0.165 3.835 15 H 0.035 0.965 16 C -0.090 4.090 17 H 0.070 0.930 18 C -0.122 4.122 19 C 0.164 3.836 20 N -0.617 5.617 21 C -0.223 4.223 22 H 0.089 0.911 23 C -0.073 4.073 24 N -0.954 5.954 25 Si 0.976 3.024 26 H -0.261 1.261 27 H -0.296 1.296 28 H -0.298 1.298 29 C 0.151 3.849 30 C -0.128 4.128 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.059 0.941 47 H -0.015 1.015 48 H 0.057 0.943 49 H 0.244 0.756 50 H 0.046 0.954 51 H 0.063 0.937 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.315 17.695 -10.858 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.150 4.150 7 C -0.070 4.070 8 C -0.134 4.134 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.332 5.332 12 C -0.010 4.010 13 C -0.167 4.167 14 C 0.059 3.941 15 H 0.053 0.947 16 C -0.109 4.109 17 H 0.088 0.912 18 C -0.161 4.161 19 C 0.039 3.961 20 N -0.341 5.341 21 C -0.352 4.352 22 H 0.107 0.893 23 C -0.265 4.265 24 N -0.604 5.604 25 Si 0.805 3.195 26 H -0.185 1.185 27 H -0.223 1.223 28 H -0.225 1.225 29 C 0.028 3.972 30 C -0.147 4.147 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.003 0.997 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.331 17.878 -10.344 26.963 hybrid contribution 1.202 -1.115 0.298 1.667 sum -16.129 16.763 -10.046 25.339 Atomic orbital electron populations 1.20810 0.89551 1.03270 1.03124 1.20205 0.97387 0.92947 0.98837 1.21156 0.93613 0.98236 1.02237 1.20189 0.94378 0.95934 0.98948 1.20812 0.99757 0.93173 1.03090 1.21048 0.99939 0.92039 1.01928 1.19475 0.93940 0.94112 0.99462 1.20793 1.03572 0.96270 0.92768 1.21124 0.76990 0.79802 0.92340 1.90688 1.52603 1.54561 1.47959 1.47373 1.55925 1.23043 1.06835 1.21835 0.95885 0.95374 0.87900 1.22082 0.96852 0.98427 0.99336 1.20487 0.87719 0.92640 0.93220 0.94726 1.20630 0.97812 0.95609 0.96881 0.91184 1.22705 0.95964 0.98773 0.98652 1.21222 0.98512 0.92133 0.84238 1.44809 1.22990 1.59480 1.06830 1.19446 1.00437 1.22444 0.92869 0.89327 1.25634 1.00427 1.02873 0.97548 1.70144 1.26770 1.50246 1.13245 0.85028 0.78443 0.77457 0.78547 1.18509 1.22300 1.22521 1.19672 0.99830 0.95043 0.82674 1.21057 0.93507 0.98353 1.01733 0.89947 0.91442 0.90774 0.84573 0.89976 0.90683 0.91686 0.86031 0.85741 0.85250 0.86988 0.89651 0.93416 0.90608 0.89945 0.92220 0.99679 0.92517 0.94655 0.93552 0.91907 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.09 -1.80 5.88 -19.86 -0.12 -1.92 16 3 C -0.13 -2.52 9.36 22.27 0.21 -2.32 16 4 C -0.09 -1.88 5.88 -19.87 -0.12 -2.00 16 5 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 6 C -0.13 -2.88 9.36 22.27 0.21 -2.67 16 7 C -0.07 -1.51 4.37 -19.87 -0.09 -1.60 16 8 C -0.09 -1.73 4.30 29.10 0.13 -1.61 16 9 C 0.51 13.53 7.60 87.66 0.67 14.20 16 10 O -0.58 -20.30 15.81 -3.03 -0.05 -20.35 16 11 N -0.60 -15.82 3.14 -835.83 -2.62 -18.45 16 12 C 0.11 2.46 5.92 86.53 0.51 2.97 16 13 C -0.13 -4.00 5.21 30.58 0.16 -3.84 16 14 C 0.17 6.27 3.22 44.39 0.14 6.41 16 15 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 16 C -0.09 -3.03 2.70 -12.10 -0.03 -3.06 16 17 H 0.07 2.27 8.10 -2.38 -0.02 2.25 16 18 C -0.12 -4.61 6.38 31.39 0.20 -4.40 16 19 C 0.16 8.13 5.67 86.72 0.49 8.62 16 20 N -0.62 -30.37 3.14 -675.38 -2.12 -32.48 16 21 C -0.22 -11.88 9.68 84.03 0.81 -11.07 16 22 H 0.09 4.42 7.51 -2.92 -0.02 4.40 16 23 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 24 N -0.95 -56.88 10.17 21.65 0.22 -56.66 16 25 Si 0.98 44.84 29.55 68.60 2.03 46.87 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 29 C 0.15 4.59 5.19 85.49 0.44 5.04 16 30 C -0.13 -2.69 9.36 22.27 0.21 -2.48 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 33 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 37 H 0.06 0.94 8.09 -2.38 -0.02 0.93 16 38 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.12 1.74 7.24 -2.38 -0.02 1.73 16 40 H 0.13 1.66 8.00 -2.38 -0.02 1.64 16 41 H 0.11 1.71 6.20 -2.39 -0.01 1.70 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 2.41 7.64 -2.39 -0.02 2.39 16 45 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 47 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.06 3.21 6.19 -2.38 -0.01 3.20 16 49 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.05 1.52 7.31 -2.38 -0.02 1.50 16 51 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 52 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -71.97 404.38 4.06 -67.91 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.89 Total: 18.12 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.72 Total: -4.96 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.52 Total: -107.59 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.97 4.06 -67.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036809042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.599 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds