Wall clock time and date at job start Wed Apr 1 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46911 * 2 1 4 4 C 1.38232 * 120.00037 * 90.00434 * 3 2 1 5 5 C 1.38234 * 120.00202 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00225 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00421 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47433 * 90.00167 * 7 6 5 9 9 O 1.21288 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00375 * 180.02562 * 8 7 6 11 11 C 1.47072 * 120.93198 * 359.97438 * 10 8 7 12 12 C 1.52634 * 107.78533 * 121.14999 * 11 10 8 13 13 C 1.50293 * 112.35380 * 52.45432 * 12 11 10 14 14 H 1.09005 * 106.39014 * 195.96427 * 13 12 11 15 15 C 1.52057 * 116.69981 * 314.11503 * 13 12 11 16 16 H 1.08995 * 111.29163 * 272.44946 * 15 13 12 17 17 C 1.56004 * 102.15616 * 154.09044 * 15 13 12 18 18 C 1.55066 * 101.17143 * 323.09243 * 17 15 13 19 19 N 1.46367 * 113.11225 * 81.00492 * 13 12 11 20 20 C 1.36942 * 126.00725 * 46.87134 * 19 13 12 21 21 H 1.07992 * 120.00091 * 0.09084 * 20 19 13 22 22 C 1.38818 * 119.99772 * 180.08216 * 20 19 13 23 23 N 1.31616 * 120.00186 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99732 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47449 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47382 * 120.00316 * 24 22 20 27 27 H 1.48501 * 109.47293 * 240.00010 * 24 22 20 28 28 C 1.46121 * 120.93533 * 179.97438 * 10 8 7 29 29 C 1.38240 * 119.99579 * 0.25810 * 6 5 4 30 30 C 1.38233 * 119.99792 * 359.48877 * 29 6 5 31 31 H 1.08998 * 109.46869 * 299.99705 * 1 2 3 32 32 H 1.08997 * 109.47206 * 60.00052 * 1 2 3 33 33 H 1.09003 * 109.46685 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47006 * 240.00609 * 2 1 3 35 35 H 1.08991 * 109.47599 * 120.00106 * 2 1 3 36 36 H 1.08003 * 120.00067 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00158 * 179.97438 * 5 4 3 38 38 H 1.09012 * 109.47105 * 330.00134 * 7 6 5 39 39 H 1.08995 * 109.47478 * 210.00503 * 7 6 5 40 40 H 1.08999 * 109.79549 * 1.57736 * 11 10 8 41 41 H 1.08997 * 109.84225 * 240.74812 * 11 10 8 42 42 H 1.09002 * 108.89001 * 173.16793 * 12 11 10 43 43 H 1.08999 * 108.89110 * 291.74498 * 12 11 10 44 44 H 1.09002 * 111.08195 * 81.06727 * 17 15 13 45 45 H 1.09002 * 111.08344 * 205.07787 * 17 15 13 46 46 H 1.09001 * 110.35988 * 155.67151 * 18 17 15 47 47 H 1.08992 * 110.36146 * 277.86698 * 18 17 15 48 48 H 0.96999 * 120.00067 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.03811 * 353.03729 * 28 10 8 50 50 H 1.08996 * 109.04173 * 111.98117 * 28 10 8 51 51 H 1.08002 * 119.99510 * 179.72677 * 29 6 5 52 52 H 1.08008 * 119.99870 * 180.23033 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7229 3.3759 1.1972 6 6 2.9532 4.0277 0.0000 7 6 3.4544 5.4489 0.0000 8 6 4.9614 5.4502 0.0005 9 8 5.5687 4.4003 0.0013 10 7 5.6343 6.6179 0.0011 11 6 4.9187 7.9028 0.0008 12 6 5.3478 8.6758 1.2450 13 6 6.8421 8.7846 1.3632 14 1 7.0485 9.0823 2.3913 15 6 7.6409 7.5131 1.1236 16 1 7.7502 6.9355 2.0414 17 6 9.0183 8.0743 0.6528 18 6 8.5724 9.2989 -0.1874 19 7 7.4078 9.8507 0.5351 20 6 6.9388 11.1341 0.4439 21 1 6.0752 11.4354 1.0179 22 6 7.5738 12.0477 -0.3863 23 7 8.6261 11.6803 -1.0862 24 14 6.9344 13.7984 -0.5101 25 1 5.7486 13.9559 0.3698 26 1 7.9967 14.7447 -0.0842 27 1 6.5493 14.0866 -1.9151 28 6 7.0953 6.6429 0.0022 29 6 2.7182 3.3777 -1.1971 30 6 2.2630 2.0724 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0824 1.5634 2.1325 37 1 2.9026 3.8852 2.1325 38 1 3.0903 5.9626 0.8899 39 1 3.0909 5.9623 -0.8900 40 1 3.8434 7.7265 0.0282 41 1 5.1771 8.4699 -0.8935 42 1 4.9233 9.6787 1.2012 43 1 4.9602 8.1671 2.1276 44 1 9.6273 8.3825 1.5026 45 1 9.5480 7.3474 0.0369 46 1 9.3730 10.0371 -0.2361 47 1 8.2848 8.9859 -1.1910 48 1 9.0700 12.3188 -1.6660 49 1 7.4682 5.6263 0.1272 50 1 7.4449 7.0347 -0.9530 51 1 2.8939 3.8884 -2.1324 52 1 2.0829 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036830071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:08 Heat of formation + Delta-G solvation = 7.303862 kcal Electronic energy + Delta-G solvation = -30091.197499 eV Core-core repulsion = 26248.549400 eV Total energy + Delta-G solvation = -3842.648098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.36954 -39.44000 -38.13364 -35.13485 -34.77208 -32.90921 -31.74905 -31.43934 -30.99236 -29.41351 -28.06047 -27.10756 -25.17059 -24.07399 -23.11722 -22.82101 -22.59309 -20.83728 -20.16143 -19.53862 -18.09817 -17.01550 -16.56148 -16.31908 -15.93854 -15.70067 -15.19669 -15.02692 -14.85037 -14.40812 -13.98037 -13.95433 -13.89265 -13.72255 -13.47138 -13.14638 -13.00816 -12.88939 -12.53993 -12.28433 -12.11647 -11.99104 -11.83163 -11.71655 -11.40006 -11.33196 -11.18022 -11.07770 -10.94861 -10.93886 -10.81017 -10.59556 -10.18168 -10.11841 -9.96596 -9.66184 -9.61327 -9.50680 -8.95723 -8.67409 -8.57196 -8.24999 -6.84144 -5.70666 -3.10035 1.23882 1.36957 2.81329 3.22639 3.35816 3.41324 3.43986 3.73126 4.43999 4.50848 4.62651 4.69085 4.78451 4.87043 4.92567 5.09403 5.15038 5.18943 5.26812 5.28475 5.29947 5.36229 5.42248 5.44493 5.50607 5.50958 5.56449 5.61398 5.71250 5.72105 5.84636 5.87288 5.93425 5.99442 6.00979 6.13694 6.21897 6.29433 6.32803 6.34486 6.41595 6.52010 6.54520 6.56225 6.68867 6.76292 6.90131 6.94339 6.96720 7.48444 7.59926 7.69860 7.82567 8.30786 8.38697 9.17367 9.79726 10.46581 11.34979 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002219 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.803135 B =12616.497672 C =13129.407984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.064 4.064 7 C -0.102 4.102 8 C 0.515 3.485 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.113 3.887 12 C -0.136 4.136 13 C 0.171 3.829 14 H 0.012 0.988 15 C -0.104 4.104 16 H 0.071 0.929 17 C -0.142 4.142 18 C 0.155 3.845 19 N -0.594 5.594 20 C -0.220 4.220 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.124 3.876 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.013 0.987 48 H 0.251 0.749 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 -17.936 2.376 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.064 4.064 7 C -0.142 4.142 8 C 0.303 3.697 9 O -0.422 6.422 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.176 4.176 13 C 0.063 3.937 14 H 0.030 0.970 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.182 4.182 18 C 0.031 3.969 19 N -0.319 5.319 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.002 3.998 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.031 0.969 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.078 -18.270 2.271 22.583 hybrid contribution -0.266 1.167 -0.098 1.201 sum -13.344 -17.102 2.173 21.801 Atomic orbital electron populations 1.21746 0.94832 1.01538 1.02213 1.20528 0.96054 0.92857 1.02748 1.19847 0.99522 0.96081 0.93277 1.20930 1.00438 0.94764 0.97403 1.20955 0.98789 0.94867 0.97398 1.19306 0.98750 0.94797 0.93557 1.20707 0.93108 0.95274 1.05132 1.20403 0.89495 0.83334 0.76443 1.90686 1.70105 1.31001 1.50391 1.47984 1.07335 1.05957 1.72246 1.21666 0.95386 0.83485 1.00372 1.21584 0.98993 1.00768 0.96244 1.19521 0.90650 0.88253 0.95241 0.97034 1.21881 0.97193 0.95650 0.97641 0.91094 1.23301 0.94758 0.99516 1.00580 1.21908 0.91879 0.91940 0.91202 1.44539 1.30789 1.05816 1.50716 1.19014 1.09986 0.84649 1.21140 0.90418 1.24769 0.98238 0.98361 0.99223 1.69846 1.21997 1.33459 1.31473 0.86052 0.77877 0.84561 0.77301 1.20566 1.21817 1.21845 1.21203 0.78851 1.00625 0.99157 1.20963 0.98808 0.94863 0.97410 1.20933 1.00442 0.94734 0.97410 0.92573 0.92577 0.92540 0.91152 0.91154 0.86327 0.86289 0.88027 0.88060 0.90627 0.90216 0.90071 0.93084 0.91916 0.92076 0.88230 0.96942 0.93804 0.89984 0.91366 0.86272 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.08 -0.65 6.06 -27.89 -0.17 -0.82 16 3 C -0.09 -0.89 5.13 -104.63 -0.54 -1.43 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 6 C -0.06 -0.78 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.18 4.18 -29.04 -0.12 -1.30 16 8 C 0.52 7.91 7.70 -10.99 -0.08 7.83 16 9 O -0.54 -10.18 15.45 5.55 0.09 -10.09 16 10 N -0.60 -9.47 2.94 -174.32 -0.51 -9.98 16 11 C 0.11 1.69 6.42 -3.92 -0.03 1.66 16 12 C -0.14 -2.26 5.62 -28.27 -0.16 -2.41 16 13 C 0.17 3.36 2.66 -69.83 -0.19 3.17 16 14 H 0.01 0.25 8.10 -51.93 -0.42 -0.17 16 15 C -0.10 -1.83 3.46 -89.97 -0.31 -2.14 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.14 -2.65 6.38 -24.03 -0.15 -2.80 16 18 C 0.16 3.61 5.50 -2.27 -0.01 3.60 16 19 N -0.59 -14.11 3.29 -165.59 -0.54 -14.66 16 20 C -0.22 -5.71 9.62 -15.05 -0.14 -5.85 16 21 H 0.08 1.95 7.09 -52.49 -0.37 1.58 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -25.93 10.17 55.49 0.56 -25.37 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.12 2.11 5.63 -4.72 -0.03 2.08 16 29 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 30 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.10 0.99 7.75 -51.92 -0.40 0.59 16 39 H 0.10 0.99 7.81 -51.93 -0.41 0.58 16 40 H 0.08 0.87 5.97 -51.93 -0.31 0.56 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.44 6.82 -51.93 -0.35 1.08 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.02 7.94 -51.93 -0.41 0.60 16 46 H 0.10 2.64 6.04 -51.93 -0.31 2.32 16 47 H 0.01 0.31 7.44 -51.93 -0.39 -0.07 16 48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.08 1.41 6.97 -51.93 -0.36 1.05 16 50 H 0.07 1.24 6.80 -51.93 -0.35 0.89 16 51 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 52 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -30.88 402.09 -11.74 -42.62 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.72 Total: 2.14 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.65 Total: -7.02 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.49 Total: -50.00 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.88 -11.74 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.922 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds