Wall clock time and date at job start Wed Apr 1 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46911 * 2 1 4 4 C 1.38232 * 120.00037 * 90.00434 * 3 2 1 5 5 C 1.38234 * 120.00202 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00225 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00421 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47433 * 90.00167 * 7 6 5 9 9 O 1.21288 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00375 * 180.02562 * 8 7 6 11 11 C 1.47072 * 120.93198 * 359.97438 * 10 8 7 12 12 C 1.52634 * 107.78533 * 121.14999 * 11 10 8 13 13 C 1.50293 * 112.35380 * 52.45432 * 12 11 10 14 14 H 1.09005 * 106.39014 * 195.96427 * 13 12 11 15 15 C 1.52057 * 116.69981 * 314.11503 * 13 12 11 16 16 H 1.08995 * 111.29163 * 272.44946 * 15 13 12 17 17 C 1.56004 * 102.15616 * 154.09044 * 15 13 12 18 18 C 1.55066 * 101.17143 * 323.09243 * 17 15 13 19 19 N 1.46367 * 113.11225 * 81.00492 * 13 12 11 20 20 C 1.36942 * 126.00725 * 46.87134 * 19 13 12 21 21 H 1.07992 * 120.00091 * 0.09084 * 20 19 13 22 22 C 1.38818 * 119.99772 * 180.08216 * 20 19 13 23 23 N 1.31616 * 120.00186 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99732 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47449 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47382 * 120.00316 * 24 22 20 27 27 H 1.48501 * 109.47293 * 240.00010 * 24 22 20 28 28 C 1.46121 * 120.93533 * 179.97438 * 10 8 7 29 29 C 1.38240 * 119.99579 * 0.25810 * 6 5 4 30 30 C 1.38233 * 119.99792 * 359.48877 * 29 6 5 31 31 H 1.08998 * 109.46869 * 299.99705 * 1 2 3 32 32 H 1.08997 * 109.47206 * 60.00052 * 1 2 3 33 33 H 1.09003 * 109.46685 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47006 * 240.00609 * 2 1 3 35 35 H 1.08991 * 109.47599 * 120.00106 * 2 1 3 36 36 H 1.08003 * 120.00067 * 359.97438 * 4 3 2 37 37 H 1.08004 * 120.00158 * 179.97438 * 5 4 3 38 38 H 1.09012 * 109.47105 * 330.00134 * 7 6 5 39 39 H 1.08995 * 109.47478 * 210.00503 * 7 6 5 40 40 H 1.08999 * 109.79549 * 1.57736 * 11 10 8 41 41 H 1.08997 * 109.84225 * 240.74812 * 11 10 8 42 42 H 1.09002 * 108.89001 * 173.16793 * 12 11 10 43 43 H 1.08999 * 108.89110 * 291.74498 * 12 11 10 44 44 H 1.09002 * 111.08195 * 81.06727 * 17 15 13 45 45 H 1.09002 * 111.08344 * 205.07787 * 17 15 13 46 46 H 1.09001 * 110.35988 * 155.67151 * 18 17 15 47 47 H 1.08992 * 110.36146 * 277.86698 * 18 17 15 48 48 H 0.96999 * 120.00067 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.03811 * 353.03729 * 28 10 8 50 50 H 1.08996 * 109.04173 * 111.98117 * 28 10 8 51 51 H 1.08002 * 119.99510 * 179.72677 * 29 6 5 52 52 H 1.08008 * 119.99870 * 180.23033 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7229 3.3759 1.1972 6 6 2.9532 4.0277 0.0000 7 6 3.4544 5.4489 0.0000 8 6 4.9614 5.4502 0.0005 9 8 5.5687 4.4003 0.0013 10 7 5.6343 6.6179 0.0011 11 6 4.9187 7.9028 0.0008 12 6 5.3478 8.6758 1.2450 13 6 6.8421 8.7846 1.3632 14 1 7.0485 9.0823 2.3913 15 6 7.6409 7.5131 1.1236 16 1 7.7502 6.9355 2.0414 17 6 9.0183 8.0743 0.6528 18 6 8.5724 9.2989 -0.1874 19 7 7.4078 9.8507 0.5351 20 6 6.9388 11.1341 0.4439 21 1 6.0752 11.4354 1.0179 22 6 7.5738 12.0477 -0.3863 23 7 8.6261 11.6803 -1.0862 24 14 6.9344 13.7984 -0.5101 25 1 5.7486 13.9559 0.3698 26 1 7.9967 14.7447 -0.0842 27 1 6.5493 14.0866 -1.9151 28 6 7.0953 6.6429 0.0022 29 6 2.7182 3.3777 -1.1971 30 6 2.2630 2.0724 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0824 1.5634 2.1325 37 1 2.9026 3.8852 2.1325 38 1 3.0903 5.9626 0.8899 39 1 3.0909 5.9623 -0.8900 40 1 3.8434 7.7265 0.0282 41 1 5.1771 8.4699 -0.8935 42 1 4.9233 9.6787 1.2012 43 1 4.9602 8.1671 2.1276 44 1 9.6273 8.3825 1.5026 45 1 9.5480 7.3474 0.0369 46 1 9.3730 10.0371 -0.2361 47 1 8.2848 8.9859 -1.1910 48 1 9.0700 12.3188 -1.6660 49 1 7.4682 5.6263 0.1272 50 1 7.4449 7.0347 -0.9530 51 1 2.8939 3.8884 -2.1324 52 1 2.0829 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036830071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:06 Heat of formation + Delta-G solvation = -7.301249 kcal Electronic energy + Delta-G solvation = -30091.830824 eV Core-core repulsion = 26248.549400 eV Total energy + Delta-G solvation = -3843.281423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.60012 -40.44027 -39.46466 -36.58901 -35.53656 -34.63597 -33.29124 -32.31527 -31.77883 -31.05425 -29.47779 -28.17438 -26.76428 -25.53214 -24.03945 -23.92986 -23.61256 -21.94975 -21.65142 -20.77753 -19.55776 -18.47081 -18.05220 -17.41094 -16.98857 -16.82276 -16.60397 -16.12842 -15.95577 -15.89985 -15.62226 -15.06934 -14.66226 -14.59320 -14.50112 -14.39470 -14.15767 -14.05251 -13.89951 -13.63461 -13.28831 -13.04693 -13.02478 -12.91111 -12.84855 -12.62547 -12.55449 -12.46537 -12.18029 -12.04245 -11.92196 -11.68287 -11.64746 -11.62924 -11.60012 -11.39890 -11.22730 -10.83159 -10.68377 -9.76511 -9.59416 -9.38382 -8.78614 -7.73650 -5.14070 0.42388 0.56095 1.48961 1.49671 1.59167 1.63731 2.04424 2.52418 2.87933 3.37738 3.58710 3.68689 3.74536 3.80312 3.90528 3.94572 3.99697 4.01000 4.16701 4.20597 4.22967 4.28670 4.42745 4.48006 4.52471 4.57757 4.60465 4.61433 4.62304 4.74984 4.76349 4.78759 4.80816 4.92688 4.97354 5.07607 5.09323 5.10759 5.15939 5.20673 5.25771 5.36786 5.40341 5.42184 5.53071 5.54964 5.58921 5.67359 5.71597 5.76475 5.85735 6.16485 6.33654 6.48932 7.15336 7.18324 7.84617 8.51160 9.30950 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002219 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.803135 B =12616.497672 C =13129.407984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.083 4.083 7 C -0.095 4.095 8 C 0.516 3.484 9 O -0.580 6.580 10 N -0.604 5.604 11 C 0.120 3.880 12 C -0.132 4.132 13 C 0.165 3.835 14 H 0.001 0.999 15 C -0.093 4.093 16 H 0.091 0.909 17 C -0.130 4.130 18 C 0.161 3.839 19 N -0.610 5.610 20 C -0.218 4.218 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.973 3.027 25 H -0.263 1.263 26 H -0.299 1.299 27 H -0.297 1.297 28 C 0.130 3.870 29 C -0.118 4.118 30 C -0.128 4.128 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.063 0.937 47 H -0.013 1.013 48 H 0.243 0.757 49 H 0.082 0.918 50 H 0.049 0.951 51 H 0.125 0.875 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.861 -19.335 3.566 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.135 4.135 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.336 5.336 11 C -0.002 4.002 12 C -0.171 4.171 13 C 0.059 3.941 14 H 0.019 0.981 15 C -0.113 4.113 16 H 0.110 0.890 17 C -0.169 4.169 18 C 0.035 3.965 19 N -0.335 5.335 20 C -0.348 4.348 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.803 3.197 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.224 1.224 28 C 0.007 3.993 29 C -0.136 4.136 30 C -0.146 4.146 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.005 0.995 48 H 0.053 0.947 49 H 0.100 0.900 50 H 0.067 0.933 51 H 0.143 0.857 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.522 -19.683 3.489 25.309 hybrid contribution 0.487 1.514 -0.442 1.651 sum -15.035 -18.169 3.048 23.779 Atomic orbital electron populations 1.21720 0.93946 1.02388 1.01952 1.20580 0.96744 0.91414 1.03395 1.20187 0.98759 0.97206 0.93040 1.21221 1.00188 0.94728 0.98387 1.21196 0.98983 0.95460 0.97710 1.19458 0.99605 0.95311 0.93924 1.20747 0.89776 0.95705 1.07229 1.21068 0.91010 0.82307 0.74973 1.90670 1.71224 1.32185 1.51900 1.48023 1.06685 1.06586 1.72291 1.21659 0.97666 0.82561 0.98294 1.21493 0.96397 1.00945 0.98313 1.19768 0.92902 0.87897 0.93555 0.98099 1.21831 0.95821 0.95016 0.98626 0.89044 1.23163 0.95768 0.97888 1.00116 1.21641 0.90901 0.92787 0.91125 1.44766 1.31403 1.06378 1.50939 1.19379 1.09561 0.85690 1.20124 0.89563 1.25548 0.98916 1.01975 0.99828 1.70092 1.23404 1.34129 1.32498 0.85070 0.77533 0.80172 0.76949 1.18733 1.22618 1.22440 1.21002 0.80228 1.00140 0.97923 1.21192 0.99204 0.95519 0.97724 1.21208 1.00305 0.94678 0.98421 0.92785 0.92888 0.91151 0.90579 0.90464 0.84657 0.85378 0.85563 0.86055 0.86312 0.92883 0.91089 0.90276 0.91568 0.90058 0.91892 0.99461 0.94719 0.89984 0.93260 0.85730 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.94 16 3 C -0.09 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 5 C -0.12 -2.46 9.70 22.27 0.22 -2.25 16 6 C -0.08 -1.85 4.37 -19.87 -0.09 -1.94 16 7 C -0.10 -1.91 4.18 29.10 0.12 -1.79 16 8 C 0.52 14.77 7.70 87.66 0.67 15.45 16 9 O -0.58 -20.97 15.45 -3.05 -0.05 -21.02 16 10 N -0.60 -17.87 2.94 -823.81 -2.42 -20.29 16 11 C 0.12 3.31 6.42 86.15 0.55 3.86 16 12 C -0.13 -4.08 5.62 29.60 0.17 -3.91 16 13 C 0.17 6.32 2.66 43.83 0.12 6.43 16 14 H 0.00 0.05 8.10 -2.38 -0.02 0.03 16 15 C -0.09 -3.16 3.46 -10.37 -0.04 -3.20 16 16 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 17 C -0.13 -4.82 6.38 32.34 0.21 -4.62 16 18 C 0.16 7.72 5.50 86.85 0.48 8.20 16 19 N -0.61 -29.33 3.29 -677.80 -2.23 -31.56 16 20 C -0.22 -11.44 9.62 84.03 0.81 -10.63 16 21 H 0.09 4.27 7.09 -2.91 -0.02 4.25 16 22 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 23 N -0.95 -55.71 10.17 21.65 0.22 -55.49 16 24 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 C 0.13 4.32 5.63 86.14 0.49 4.81 16 29 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 30 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 35 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 36 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.13 1.91 7.75 -2.38 -0.02 1.90 16 39 H 0.12 1.95 7.81 -2.39 -0.02 1.93 16 40 H 0.12 2.25 5.97 -2.39 -0.01 2.24 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.37 6.82 -2.39 -0.02 2.35 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.08 2.66 7.94 -2.39 -0.02 2.64 16 46 H 0.06 3.50 6.04 -2.39 -0.01 3.49 16 47 H -0.01 -0.65 7.44 -2.39 -0.02 -0.67 16 48 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.08 2.74 6.97 -2.38 -0.02 2.72 16 50 H 0.05 1.82 6.80 -2.39 -0.02 1.80 16 51 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 52 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.85 402.09 4.05 -64.80 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.89 Total: 20.66 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.61 Total: -3.57 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.43 Total: -107.34 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.85 4.05 -64.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.498 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds