Wall clock time and date at job start Wed Apr 1 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47221 * 2 1 4 4 C 1.38227 * 120.00136 * 89.99844 * 3 2 1 5 5 C 1.38244 * 120.00133 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99860 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99959 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46590 * 119.68285 * 0.02562 * 10 8 7 12 12 C 1.53953 * 110.57566 * 132.15022 * 11 10 8 13 13 C 1.51518 * 107.34640 * 51.04928 * 12 11 10 14 14 H 1.08996 * 109.28085 * 53.70575 * 13 12 11 15 15 C 1.55360 * 107.79769 * 295.14479 * 13 12 11 16 16 H 1.09007 * 111.51113 * 308.81229 * 15 13 12 17 17 C 1.53424 * 100.36372 * 190.35316 * 15 13 12 18 18 C 1.55292 * 101.41546 * 39.95101 * 17 15 13 19 19 N 1.45470 * 117.35211 * 178.76669 * 13 12 11 20 20 C 1.36939 * 126.40513 * 329.34728 * 19 13 12 21 21 H 1.07994 * 120.00028 * 0.02562 * 20 19 13 22 22 C 1.38811 * 119.99705 * 180.02562 * 20 19 13 23 23 N 1.31620 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47351 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.47081 * 239.99922 * 24 22 20 28 28 C 1.47719 * 119.68011 * 179.72560 * 10 8 7 29 29 C 1.38234 * 120.00312 * 0.25696 * 6 5 4 30 30 C 1.38239 * 119.99901 * 359.49432 * 29 6 5 31 31 H 1.09001 * 109.46605 * 60.00095 * 1 2 3 32 32 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47197 * 300.00460 * 1 2 3 34 34 H 1.09002 * 109.47196 * 239.99548 * 2 1 3 35 35 H 1.09001 * 109.46605 * 119.99904 * 2 1 3 36 36 H 1.07996 * 120.00251 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99981 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47152 * 330.00052 * 7 6 5 39 39 H 1.09001 * 109.46980 * 210.00152 * 7 6 5 40 40 H 1.09002 * 109.25288 * 252.42847 * 11 10 8 41 41 H 1.08998 * 109.26061 * 11.89914 * 11 10 8 42 42 H 1.09002 * 109.88678 * 170.51610 * 12 11 10 43 43 H 1.09003 * 109.88071 * 291.59639 * 12 11 10 44 44 H 1.08998 * 111.57724 * 281.77011 * 17 15 13 45 45 H 1.09003 * 110.76345 * 157.77234 * 17 15 13 46 46 H 1.09004 * 109.91718 * 217.67992 * 18 17 15 47 47 H 1.09001 * 109.91583 * 96.38352 * 18 17 15 48 48 H 0.97001 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.06840 * 351.29680 * 28 10 8 50 50 H 1.09003 * 110.06682 * 112.87185 * 28 10 8 51 51 H 1.07998 * 120.00015 * 179.72855 * 29 6 5 52 52 H 1.08001 * 119.99843 * 180.23314 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9535 4.0275 -0.0001 7 6 3.4547 5.4487 -0.0002 8 6 4.9618 5.4499 0.0005 9 8 5.5689 4.4000 0.0005 10 7 5.6347 6.6176 0.0000 11 6 4.8938 7.8825 -0.0006 12 6 5.4548 8.8387 1.0676 13 6 6.9543 8.9145 0.8634 14 1 7.1633 9.1849 -0.1716 15 6 7.5447 7.5068 1.1527 16 1 7.2071 7.1219 2.1150 17 6 9.0436 7.8337 1.1659 18 6 9.0544 9.1969 1.9095 19 7 7.7061 9.7897 1.7493 20 6 7.2527 10.9457 2.3265 21 1 6.2448 11.2844 2.1375 22 6 8.0886 11.6822 3.1546 23 7 9.3168 11.2691 3.3853 24 14 7.4699 13.2588 3.9426 25 1 6.0649 13.5014 3.5275 26 1 7.5349 13.1321 5.4207 27 1 8.3181 14.3966 3.5055 28 6 7.1119 6.6105 0.0068 29 6 2.7185 3.3775 -1.1972 30 6 2.2631 2.0723 -1.1972 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5635 2.1324 37 1 2.9027 3.8852 2.1324 38 1 3.0906 5.9625 0.8896 39 1 3.0914 5.9621 -0.8904 40 1 4.9802 8.3492 -0.9818 41 1 3.8433 7.6839 0.2116 42 1 5.0138 9.8283 0.9478 43 1 5.2355 8.4522 2.0630 44 1 9.4402 7.9373 0.1559 45 1 9.5985 7.0802 1.7251 46 1 9.8040 9.8544 1.4689 47 1 9.2685 9.0414 2.9669 48 1 9.9008 11.7836 3.9643 49 1 7.4804 5.5972 0.1665 50 1 7.4921 7.0038 -0.9360 51 1 2.8944 3.8880 -2.1325 52 1 2.0832 1.5631 -2.1326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036830072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:12 Heat of formation + Delta-G solvation = 7.255322 kcal Electronic energy + Delta-G solvation = -29782.054326 eV Core-core repulsion = 25939.404123 eV Total energy + Delta-G solvation = -3842.650203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.45503 -39.47389 -38.17369 -35.37868 -34.81752 -32.80654 -31.59787 -31.49941 -31.02727 -29.64171 -28.33207 -27.09035 -24.91628 -23.85844 -22.95306 -22.85839 -22.35867 -20.85338 -20.09456 -19.76109 -18.81176 -17.18551 -16.51605 -16.21765 -16.04155 -15.65015 -15.15901 -15.05439 -14.93934 -14.37640 -13.99604 -13.99260 -13.88509 -13.70083 -13.51911 -13.26453 -13.14134 -12.80136 -12.65249 -12.45268 -12.23730 -12.09992 -11.86128 -11.65191 -11.49001 -11.42509 -11.39664 -11.02255 -10.98154 -10.85752 -10.81873 -10.72839 -10.15226 -10.08013 -9.91967 -9.67280 -9.64928 -9.45795 -8.99187 -8.64835 -8.61210 -8.48529 -6.85531 -5.73522 -3.06795 1.19967 1.33425 2.71744 3.08073 3.37490 3.42525 3.45398 3.67278 4.46203 4.47065 4.59284 4.62957 4.69234 4.82765 4.88933 4.99245 5.07114 5.09831 5.14776 5.24972 5.26347 5.30443 5.35595 5.39472 5.47478 5.53174 5.57047 5.59760 5.60674 5.68491 5.79902 5.84134 5.88954 5.95686 5.97420 6.03245 6.14947 6.17213 6.22112 6.29621 6.35749 6.48840 6.49496 6.50354 6.60888 6.62948 6.83733 6.90604 7.05529 7.51096 7.53984 7.60488 7.79490 8.22389 8.27753 9.17310 9.81033 10.49191 11.39006 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.002097 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.205694 B =13347.285251 C =13811.223105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.513 3.487 9 O -0.539 6.539 10 N -0.608 5.608 11 C 0.110 3.890 12 C -0.130 4.130 13 C 0.167 3.833 14 H 0.020 0.980 15 C -0.123 4.123 16 H 0.079 0.921 17 C -0.137 4.137 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.225 4.225 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.127 3.873 29 C -0.103 4.103 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.054 0.946 48 H 0.252 0.748 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 -17.358 -8.929 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.038 0.962 15 C -0.144 4.144 16 H 0.098 0.902 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.320 5.320 20 C -0.353 4.353 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.005 3.995 29 C -0.121 4.121 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.085 0.915 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.174 -17.702 -8.789 24.917 hybrid contribution -0.157 1.127 0.527 1.254 sum -15.332 -16.576 -8.262 24.043 Atomic orbital electron populations 1.21746 0.94811 1.01564 1.02208 1.20534 0.96070 0.92839 1.02780 1.19855 0.99421 0.96092 0.93271 1.20947 1.00312 0.94760 0.97454 1.20978 0.98630 0.94885 0.97458 1.19295 0.98939 0.94783 0.93573 1.20745 0.93087 0.95399 1.05109 1.20493 0.89567 0.83545 0.76301 1.90696 1.70090 1.31014 1.49855 1.48341 1.07257 1.05767 1.72807 1.21815 0.95366 0.84200 0.99966 1.21886 0.97980 0.98710 0.98313 1.20645 0.90447 0.89090 0.93950 0.96250 1.22508 0.97202 0.96731 0.97942 0.90216 1.22662 0.94311 0.99996 1.00622 1.21532 0.86730 0.88096 0.98382 1.44230 1.09771 1.23728 1.54249 1.19035 0.97287 0.97112 1.21900 0.90329 1.24803 0.96164 0.99215 1.00352 1.69953 1.06315 1.39395 1.41157 0.86080 0.77764 0.83149 0.78972 1.20538 1.21823 1.21807 1.21522 0.78067 1.01424 0.98516 1.20938 0.98951 0.94873 0.97314 1.20929 1.00491 0.94739 0.97402 0.92590 0.92519 0.92560 0.91146 0.91118 0.86269 0.86212 0.87898 0.88083 0.91608 0.90236 0.90506 0.91371 0.92242 0.92102 0.94398 0.92728 0.93806 0.89352 0.91478 0.86335 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 5 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 6 C -0.07 -0.75 4.37 -104.62 -0.46 -1.21 16 7 C -0.10 -1.09 4.16 -29.03 -0.12 -1.21 16 8 C 0.51 7.29 7.66 -10.98 -0.08 7.21 16 9 O -0.54 -9.62 15.39 5.56 0.09 -9.54 16 10 N -0.61 -8.53 3.01 -172.77 -0.52 -9.05 16 11 C 0.11 1.35 6.22 -3.50 -0.02 1.32 16 12 C -0.13 -2.09 5.47 -26.98 -0.15 -2.23 16 13 C 0.17 3.25 2.58 -67.98 -0.18 3.07 16 14 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 15 C -0.12 -2.19 2.83 -89.77 -0.25 -2.44 16 16 H 0.08 1.54 8.13 -51.92 -0.42 1.12 16 17 C -0.14 -2.54 6.51 -25.30 -0.16 -2.71 16 18 C 0.18 4.23 5.43 -1.92 -0.01 4.22 16 19 N -0.60 -14.61 3.34 -163.10 -0.55 -15.16 16 20 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 21 H 0.08 2.01 7.23 -52.49 -0.38 1.63 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.77 10.44 55.49 0.58 -26.19 16 24 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.13 1.94 5.90 -3.99 -0.02 1.92 16 29 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 30 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.10 0.92 7.49 -51.93 -0.39 0.53 16 39 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.75 5.84 -51.93 -0.30 0.44 16 42 H 0.08 1.24 7.65 -51.93 -0.40 0.84 16 43 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 44 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 47 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 50 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 52 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.32 405.40 -11.79 -44.12 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.90 Total: 0.52 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.58 Total: -7.53 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.49 Total: -50.39 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.32 -11.79 -44.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.371 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds