Wall clock time and date at job start Wed Apr 1 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47221 * 2 1 4 4 C 1.38227 * 120.00136 * 89.99844 * 3 2 1 5 5 C 1.38244 * 120.00133 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99860 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99959 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46590 * 119.68285 * 0.02562 * 10 8 7 12 12 C 1.53953 * 110.57566 * 132.15022 * 11 10 8 13 13 C 1.51518 * 107.34640 * 51.04928 * 12 11 10 14 14 H 1.08996 * 109.28085 * 53.70575 * 13 12 11 15 15 C 1.55360 * 107.79769 * 295.14479 * 13 12 11 16 16 H 1.09007 * 111.51113 * 308.81229 * 15 13 12 17 17 C 1.53424 * 100.36372 * 190.35316 * 15 13 12 18 18 C 1.55292 * 101.41546 * 39.95101 * 17 15 13 19 19 N 1.45470 * 117.35211 * 178.76669 * 13 12 11 20 20 C 1.36939 * 126.40513 * 329.34728 * 19 13 12 21 21 H 1.07994 * 120.00028 * 0.02562 * 20 19 13 22 22 C 1.38811 * 119.99705 * 180.02562 * 20 19 13 23 23 N 1.31620 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47351 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.47081 * 239.99922 * 24 22 20 28 28 C 1.47719 * 119.68011 * 179.72560 * 10 8 7 29 29 C 1.38234 * 120.00312 * 0.25696 * 6 5 4 30 30 C 1.38239 * 119.99901 * 359.49432 * 29 6 5 31 31 H 1.09001 * 109.46605 * 60.00095 * 1 2 3 32 32 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47197 * 300.00460 * 1 2 3 34 34 H 1.09002 * 109.47196 * 239.99548 * 2 1 3 35 35 H 1.09001 * 109.46605 * 119.99904 * 2 1 3 36 36 H 1.07996 * 120.00251 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99981 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47152 * 330.00052 * 7 6 5 39 39 H 1.09001 * 109.46980 * 210.00152 * 7 6 5 40 40 H 1.09002 * 109.25288 * 252.42847 * 11 10 8 41 41 H 1.08998 * 109.26061 * 11.89914 * 11 10 8 42 42 H 1.09002 * 109.88678 * 170.51610 * 12 11 10 43 43 H 1.09003 * 109.88071 * 291.59639 * 12 11 10 44 44 H 1.08998 * 111.57724 * 281.77011 * 17 15 13 45 45 H 1.09003 * 110.76345 * 157.77234 * 17 15 13 46 46 H 1.09004 * 109.91718 * 217.67992 * 18 17 15 47 47 H 1.09001 * 109.91583 * 96.38352 * 18 17 15 48 48 H 0.97001 * 119.99750 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.06840 * 351.29680 * 28 10 8 50 50 H 1.09003 * 110.06682 * 112.87185 * 28 10 8 51 51 H 1.07998 * 120.00015 * 179.72855 * 29 6 5 52 52 H 1.08001 * 119.99843 * 180.23314 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9535 4.0275 -0.0001 7 6 3.4547 5.4487 -0.0002 8 6 4.9618 5.4499 0.0005 9 8 5.5689 4.4000 0.0005 10 7 5.6347 6.6176 0.0000 11 6 4.8938 7.8825 -0.0006 12 6 5.4548 8.8387 1.0676 13 6 6.9543 8.9145 0.8634 14 1 7.1633 9.1849 -0.1716 15 6 7.5447 7.5068 1.1527 16 1 7.2071 7.1219 2.1150 17 6 9.0436 7.8337 1.1659 18 6 9.0544 9.1969 1.9095 19 7 7.7061 9.7897 1.7493 20 6 7.2527 10.9457 2.3265 21 1 6.2448 11.2844 2.1375 22 6 8.0886 11.6822 3.1546 23 7 9.3168 11.2691 3.3853 24 14 7.4699 13.2588 3.9426 25 1 6.0649 13.5014 3.5275 26 1 7.5349 13.1321 5.4207 27 1 8.3181 14.3966 3.5055 28 6 7.1119 6.6105 0.0068 29 6 2.7185 3.3775 -1.1972 30 6 2.2631 2.0723 -1.1972 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5635 2.1324 37 1 2.9027 3.8852 2.1324 38 1 3.0906 5.9625 0.8896 39 1 3.0914 5.9621 -0.8904 40 1 4.9802 8.3492 -0.9818 41 1 3.8433 7.6839 0.2116 42 1 5.0138 9.8283 0.9478 43 1 5.2355 8.4522 2.0630 44 1 9.4402 7.9373 0.1559 45 1 9.5985 7.0802 1.7251 46 1 9.8040 9.8544 1.4689 47 1 9.2685 9.0414 2.9669 48 1 9.9008 11.7836 3.9643 49 1 7.4804 5.5972 0.1665 50 1 7.4921 7.0038 -0.9360 51 1 2.8944 3.8880 -2.1325 52 1 2.0832 1.5631 -2.1326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036830072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:10 Heat of formation + Delta-G solvation = -9.024784 kcal Electronic energy + Delta-G solvation = -29782.760285 eV Core-core repulsion = 25939.404123 eV Total energy + Delta-G solvation = -3843.356161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.58761 -40.42829 -39.46960 -36.77891 -35.53159 -34.56311 -33.02816 -32.40654 -31.77511 -31.18701 -29.77971 -28.01085 -26.66553 -25.04636 -23.90421 -23.68121 -23.61204 -21.90850 -21.62182 -21.11933 -19.97846 -18.65698 -17.85540 -17.29333 -16.93758 -16.85452 -16.53389 -16.13302 -15.97425 -15.82175 -15.61355 -15.07391 -14.82189 -14.57131 -14.52536 -14.26306 -14.21925 -14.07828 -13.83341 -13.64640 -13.34161 -13.18313 -13.10345 -12.90515 -12.85571 -12.69980 -12.51850 -12.43983 -12.08130 -12.03218 -11.96028 -11.76535 -11.66615 -11.63031 -11.60643 -11.51804 -10.99487 -10.79395 -10.71460 -9.76303 -9.65434 -9.37823 -8.86739 -7.82646 -5.17068 0.42855 0.56263 1.46572 1.47082 1.57076 1.65616 2.02506 2.51088 2.88029 3.36505 3.45175 3.69986 3.74486 3.87500 3.91061 3.94900 3.99378 4.04827 4.17324 4.21001 4.24616 4.25349 4.43013 4.48655 4.51608 4.52991 4.60114 4.62479 4.66910 4.74016 4.75607 4.79159 4.84192 4.85819 4.93648 5.06216 5.07484 5.08301 5.10377 5.20485 5.24632 5.25881 5.40087 5.47864 5.54645 5.55501 5.58794 5.66832 5.71718 5.76604 5.76755 6.16680 6.21336 6.44686 7.09870 7.20128 7.80461 8.49490 9.29576 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.002097 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.205694 B =13347.285251 C =13811.223105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.097 4.097 8 C 0.512 3.488 9 O -0.580 6.580 10 N -0.610 5.610 11 C 0.117 3.883 12 C -0.124 4.124 13 C 0.157 3.843 14 H 0.024 0.976 15 C -0.108 4.108 16 H 0.060 0.940 17 C -0.123 4.123 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.225 4.225 21 H 0.091 0.909 22 C -0.074 4.074 23 N -0.956 5.956 24 Si 0.974 3.026 25 H -0.260 1.260 26 H -0.297 1.297 27 H -0.296 1.296 28 C 0.135 3.865 29 C -0.114 4.114 30 C -0.127 4.127 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.015 0.985 48 H 0.244 0.756 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.132 0.868 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.369 -18.150 -10.645 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.083 4.083 7 C -0.136 4.136 8 C 0.302 3.698 9 O -0.460 6.460 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.163 4.163 13 C 0.050 3.950 14 H 0.041 0.959 15 C -0.129 4.129 16 H 0.078 0.922 17 C -0.162 4.162 18 C 0.057 3.943 19 N -0.341 5.341 20 C -0.354 4.354 21 H 0.108 0.892 22 C -0.266 4.266 23 N -0.606 5.606 24 Si 0.804 3.196 25 H -0.184 1.184 26 H -0.225 1.225 27 H -0.224 1.224 28 C 0.012 3.988 29 C -0.132 4.132 30 C -0.145 4.145 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.022 0.978 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.150 0.850 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.008 -18.499 -10.533 27.883 hybrid contribution 0.714 1.313 1.044 1.823 sum -17.294 -17.186 -9.489 26.163 Atomic orbital electron populations 1.21719 0.93935 1.02378 1.01956 1.20582 0.96760 0.91483 1.03352 1.20178 0.98811 0.97174 0.93075 1.21198 1.00395 0.94788 0.98398 1.21190 0.99251 0.95529 0.97821 1.19485 0.99536 0.95531 0.93787 1.20794 0.89918 0.95514 1.07366 1.21132 0.91034 0.82676 0.74939 1.90681 1.71239 1.32446 1.51662 1.48406 1.06634 1.06615 1.72582 1.21921 0.96697 0.82515 0.99447 1.21825 0.95391 0.99981 0.99145 1.20904 0.92569 0.88719 0.92805 0.95871 1.22323 0.96075 0.96325 0.98160 0.92158 1.22542 0.95644 0.96966 1.01063 1.21289 0.86226 0.90288 0.96494 1.44525 1.10685 1.24095 1.54748 1.19473 0.97552 0.97574 1.20847 0.89170 1.25653 0.96554 1.02642 1.01798 1.70183 1.07557 1.40599 1.42229 0.85051 0.78050 0.79180 0.77360 1.18398 1.22498 1.22390 1.21331 0.79462 1.00234 0.97742 1.21209 0.98908 0.95363 0.97745 1.21235 1.00189 0.94806 0.98297 0.92680 0.91184 0.92966 0.90399 0.90744 0.85112 0.86000 0.86092 0.85070 0.89576 0.86479 0.90373 0.92771 0.90241 0.90769 0.97839 0.96647 0.94706 0.90083 0.90029 0.85031 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.83 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 5 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 6 C -0.08 -1.75 4.37 -19.87 -0.09 -1.84 16 7 C -0.10 -1.71 4.16 29.10 0.12 -1.59 16 8 C 0.51 13.29 7.66 87.66 0.67 13.96 16 9 O -0.58 -19.98 15.39 -3.03 -0.05 -20.02 16 10 N -0.61 -15.36 3.01 -818.90 -2.46 -17.82 16 11 C 0.12 2.40 6.22 86.68 0.54 2.94 16 12 C -0.12 -3.72 5.47 30.43 0.17 -3.56 16 13 C 0.16 5.93 2.58 45.51 0.12 6.05 16 14 H 0.02 0.90 7.95 -2.39 -0.02 0.88 16 15 C -0.11 -3.76 2.83 -10.24 -0.03 -3.79 16 16 H 0.06 2.33 8.13 -2.38 -0.02 2.31 16 17 C -0.12 -4.57 6.51 31.52 0.21 -4.37 16 18 C 0.18 9.06 5.43 86.85 0.47 9.54 16 19 N -0.62 -30.68 3.34 -669.92 -2.24 -32.92 16 20 C -0.23 -12.17 9.88 84.03 0.83 -11.34 16 21 H 0.09 4.54 7.23 -2.91 -0.02 4.52 16 22 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 23 N -0.96 -58.01 10.44 21.65 0.23 -57.79 16 24 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 28 C 0.13 3.88 5.90 85.74 0.51 4.38 16 29 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 30 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.12 1.71 7.49 -2.39 -0.02 1.69 16 39 H 0.13 1.52 7.93 -2.39 -0.02 1.50 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 1.60 5.84 -2.39 -0.01 1.58 16 42 H 0.08 2.33 7.65 -2.39 -0.02 2.31 16 43 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 44 H 0.08 2.63 8.12 -2.39 -0.02 2.62 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.00 0.19 7.77 -2.39 -0.02 0.17 16 47 H 0.02 0.87 7.21 -2.39 -0.02 0.85 16 48 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.08 2.50 7.00 -2.38 -0.02 2.49 16 50 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 51 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 52 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -73.43 405.40 4.02 -69.41 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.88 Total: 17.51 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.63 Total: -5.78 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.48 Total: -108.54 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.43 4.02 -69.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.383 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds