Wall clock time and date at job start Wed Apr 1 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47358 * 2 1 4 4 C 1.38234 * 119.99552 * 90.00109 * 3 2 1 5 5 C 1.38238 * 120.00171 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99456 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.99657 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46608 * 90.00488 * 7 6 5 9 9 O 1.21280 * 119.99853 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99529 * 180.02562 * 8 7 6 11 11 C 1.46597 * 119.68592 * 359.97438 * 10 8 7 12 12 C 1.53959 * 110.57576 * 227.84716 * 11 10 8 13 13 C 1.51516 * 107.34584 * 308.94916 * 12 11 10 14 14 H 1.09004 * 108.80318 * 306.55370 * 13 12 11 15 15 C 1.55357 * 107.79455 * 64.85807 * 13 12 11 16 16 H 1.08996 * 111.51380 * 51.18593 * 15 13 12 17 17 C 1.53748 * 100.21926 * 169.08590 * 15 13 12 18 18 C 1.55288 * 101.84078 * 320.90320 * 17 15 13 19 19 N 1.45467 * 117.34550 * 181.90934 * 13 12 11 20 20 C 1.36932 * 126.40872 * 30.88502 * 19 13 12 21 21 H 1.08002 * 119.99998 * 359.71043 * 20 19 13 22 22 C 1.38810 * 120.00253 * 179.70867 * 20 19 13 23 23 N 1.31626 * 119.99903 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47013 * 90.00330 * 24 22 20 26 26 H 1.48500 * 109.47135 * 210.00107 * 24 22 20 27 27 H 1.48498 * 109.46943 * 330.00267 * 24 22 20 28 28 C 1.47722 * 119.68080 * 180.02562 * 10 8 7 29 29 C 1.38230 * 120.00292 * 0.27894 * 6 5 4 30 30 C 1.38234 * 120.00386 * 270.02623 * 3 2 1 31 31 H 1.09002 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47212 * 299.99380 * 1 2 3 33 33 H 1.09001 * 109.47772 * 59.99612 * 1 2 3 34 34 H 1.09006 * 109.46885 * 240.00600 * 2 1 3 35 35 H 1.08996 * 109.47688 * 120.00854 * 2 1 3 36 36 H 1.07998 * 120.00338 * 0.02562 * 4 3 2 37 37 H 1.08001 * 120.00470 * 180.02562 * 5 4 3 38 38 H 1.08994 * 109.46893 * 330.00303 * 7 6 5 39 39 H 1.08993 * 109.47046 * 209.99867 * 7 6 5 40 40 H 1.09003 * 109.25632 * 107.56789 * 11 10 8 41 41 H 1.08996 * 109.22651 * 348.11170 * 11 10 8 42 42 H 1.08993 * 109.87973 * 189.48543 * 12 11 10 43 43 H 1.08996 * 109.94113 * 68.44032 * 12 11 10 44 44 H 1.09000 * 110.95285 * 202.77199 * 17 15 13 45 45 H 1.08994 * 110.99021 * 79.05655 * 17 15 13 46 46 H 1.08998 * 109.92258 * 263.13469 * 18 17 15 47 47 H 1.08998 * 109.92218 * 141.83292 * 18 17 15 48 48 H 0.97005 * 119.99956 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.07017 * 8.70660 * 28 10 8 50 50 H 1.09000 * 110.06560 * 247.12940 * 28 10 8 51 51 H 1.08000 * 120.00206 * 179.72727 * 29 6 5 52 52 H 1.08005 * 119.99694 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7241 3.3754 1.1973 6 6 2.9555 4.0268 0.0002 7 6 3.4579 5.4476 0.0003 8 6 4.9650 5.4474 0.0014 9 8 5.5712 4.3970 0.0026 10 7 5.6389 6.6146 0.0022 11 6 4.8990 7.8801 0.0014 12 6 5.4623 8.8355 -1.0665 13 6 6.9615 8.9100 -0.8603 14 1 7.1605 9.1765 0.1777 15 6 7.5509 7.5018 -1.1484 16 1 7.2143 7.1169 -2.1110 17 6 9.0518 7.8343 -1.1737 18 6 9.0621 9.2059 -1.9019 19 7 7.7131 9.7958 -1.7358 20 6 7.2607 10.9601 -2.2967 21 1 6.2522 11.2958 -2.1048 22 6 8.0980 11.7091 -3.1120 23 7 9.3269 11.2998 -3.3463 24 14 7.4805 13.2972 -3.8777 25 1 7.7666 14.4317 -2.9632 26 1 8.1681 13.5214 -5.1747 27 1 6.0161 13.2009 -4.1040 28 6 7.1161 6.6063 0.0028 29 6 2.7201 3.3770 -1.1970 30 6 2.2622 2.0727 -1.1971 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3635 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 2.0831 1.5631 2.1325 37 1 2.9045 3.8844 2.1327 38 1 3.0939 5.9616 0.8898 39 1 3.0954 5.9612 -0.8901 40 1 4.9846 8.3472 0.9826 41 1 3.8487 7.6817 -0.2118 42 1 5.0220 9.8254 -0.9474 43 1 5.2438 8.4501 -2.0624 44 1 9.6070 7.0875 -1.7413 45 1 9.4483 7.9268 -0.1627 46 1 9.2769 9.0625 -2.9609 47 1 9.8108 9.8588 -1.4535 48 1 9.9120 11.8230 -3.9163 49 1 7.4845 5.5923 -0.1525 50 1 7.4919 7.0016 0.9465 51 1 2.8967 3.8874 -2.1323 52 1 2.0814 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036830073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:16 Heat of formation + Delta-G solvation = 7.052083 kcal Electronic energy + Delta-G solvation = -29773.718351 eV Core-core repulsion = 25931.059334 eV Total energy + Delta-G solvation = -3842.659016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.44813 -39.46448 -38.15459 -35.37398 -34.81815 -32.78876 -31.59407 -31.49540 -31.02801 -29.63823 -28.33297 -27.09008 -24.90670 -23.86465 -22.96006 -22.85864 -22.36254 -20.85302 -20.09131 -19.75121 -18.81381 -17.18600 -16.51716 -16.21917 -16.04244 -15.65030 -15.15745 -15.05286 -14.93670 -14.36632 -13.99628 -13.99343 -13.88806 -13.70150 -13.51890 -13.26060 -13.14166 -12.80008 -12.64509 -12.44574 -12.23643 -12.09947 -11.86176 -11.65218 -11.49392 -11.42606 -11.40070 -11.02261 -10.98173 -10.85421 -10.80445 -10.72565 -10.16774 -10.09695 -9.90695 -9.67443 -9.64610 -9.46286 -8.99268 -8.64248 -8.61264 -8.48809 -6.85458 -5.73341 -3.06618 1.19909 1.33382 2.71635 3.07823 3.37778 3.42503 3.44831 3.67205 4.46189 4.47126 4.59229 4.62861 4.69116 4.82703 4.88883 4.99151 5.07136 5.10132 5.14756 5.24946 5.26337 5.30371 5.35067 5.39420 5.47436 5.53025 5.56748 5.59672 5.60484 5.68442 5.79722 5.84092 5.88821 5.95605 5.97374 6.03209 6.14599 6.17244 6.22675 6.29594 6.35861 6.48786 6.49425 6.50284 6.61005 6.63003 6.83482 6.90544 7.05450 7.50908 7.53923 7.60340 7.79381 8.22582 8.27586 9.17418 9.81151 10.49431 11.39156 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002093 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.499541 B =13374.165773 C =13839.629372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.513 3.487 9 O -0.539 6.539 10 N -0.608 5.608 11 C 0.110 3.890 12 C -0.130 4.130 13 C 0.167 3.833 14 H 0.019 0.981 15 C -0.123 4.123 16 H 0.079 0.921 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.127 3.873 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.252 0.748 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 -17.443 8.780 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.170 4.170 13 C 0.059 3.941 14 H 0.036 0.964 15 C -0.144 4.144 16 H 0.097 0.903 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.005 3.995 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.107 0.893 50 H 0.086 0.914 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.154 -17.789 8.629 24.911 hybrid contribution -0.169 1.144 -0.494 1.257 sum -15.323 -16.645 8.134 24.042 Atomic orbital electron populations 1.21745 0.94810 1.01566 1.02209 1.20532 0.96070 0.92839 1.02781 1.19855 0.99425 0.96085 0.93270 1.20927 1.00472 0.94765 0.97404 1.20939 0.98908 0.94894 0.97320 1.19297 0.98937 0.94785 0.93573 1.20745 0.93078 0.95405 1.05111 1.20492 0.89564 0.83548 0.76299 1.90695 1.70142 1.30959 1.49859 1.48339 1.07252 1.05780 1.72805 1.21820 0.95371 0.84173 0.99969 1.21899 0.98056 0.98714 0.98291 1.20621 0.90431 0.89051 0.93998 0.96388 1.22614 0.97234 0.96662 0.97871 0.90265 1.22717 0.94282 0.99953 1.00577 1.21529 0.86743 0.87969 0.98466 1.44203 1.09734 1.22752 1.55234 1.18981 0.97218 0.96386 1.22800 0.90392 1.24803 0.96160 0.99140 1.00397 1.69945 1.06227 1.39063 1.41594 0.86152 0.77766 0.83417 0.78610 1.21654 1.21728 1.20732 1.21580 0.78058 1.01396 0.98421 1.20977 0.98650 0.94885 0.97452 1.20948 1.00328 0.94740 0.97454 0.92520 0.92589 0.92560 0.91116 0.91147 0.86326 0.86334 0.88081 0.87898 0.91610 0.90238 0.90516 0.91405 0.92081 0.92349 0.92762 0.94349 0.93753 0.89322 0.91440 0.86210 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.89 -0.17 -0.80 16 3 C -0.09 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 6 C -0.07 -0.75 4.37 -104.62 -0.46 -1.21 16 7 C -0.10 -1.09 4.16 -29.03 -0.12 -1.21 16 8 C 0.51 7.29 7.66 -10.98 -0.08 7.20 16 9 O -0.54 -9.61 15.39 5.56 0.09 -9.53 16 10 N -0.61 -8.53 3.00 -172.51 -0.52 -9.04 16 11 C 0.11 1.35 6.21 -3.49 -0.02 1.33 16 12 C -0.13 -2.10 5.49 -26.98 -0.15 -2.25 16 13 C 0.17 3.26 2.57 -67.99 -0.17 3.08 16 14 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 15 C -0.12 -2.19 2.86 -89.39 -0.26 -2.44 16 16 H 0.08 1.53 8.13 -51.93 -0.42 1.10 16 17 C -0.14 -2.53 6.54 -25.13 -0.16 -2.70 16 18 C 0.18 4.24 5.45 -1.91 -0.01 4.23 16 19 N -0.59 -14.61 3.35 -163.10 -0.55 -15.16 16 20 C -0.23 -6.04 9.88 -15.06 -0.15 -6.19 16 21 H 0.08 1.99 7.22 -52.49 -0.38 1.61 16 22 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -26.76 10.44 55.49 0.58 -26.18 16 24 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 C 0.13 1.95 5.95 -3.78 -0.02 1.93 16 29 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 30 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 39 H 0.10 0.92 7.49 -51.93 -0.39 0.53 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.75 5.83 -51.93 -0.30 0.45 16 42 H 0.08 1.24 7.62 -51.93 -0.40 0.85 16 43 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.05 1.45 7.23 -51.93 -0.38 1.07 16 47 H 0.04 1.01 7.76 -51.93 -0.40 0.60 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.09 1.43 7.00 -51.93 -0.36 1.06 16 50 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 51 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 52 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -32.29 405.43 -11.79 -44.08 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.90 Total: 0.52 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.58 Total: -7.51 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.48 Total: -50.38 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.29 -11.79 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.128 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds