Wall clock time and date at job start Wed Apr 1 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47358 * 2 1 4 4 C 1.38234 * 119.99552 * 90.00109 * 3 2 1 5 5 C 1.38238 * 120.00171 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99456 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.99657 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46608 * 90.00488 * 7 6 5 9 9 O 1.21280 * 119.99853 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99529 * 180.02562 * 8 7 6 11 11 C 1.46597 * 119.68592 * 359.97438 * 10 8 7 12 12 C 1.53959 * 110.57576 * 227.84716 * 11 10 8 13 13 C 1.51516 * 107.34584 * 308.94916 * 12 11 10 14 14 H 1.09004 * 108.80318 * 306.55370 * 13 12 11 15 15 C 1.55357 * 107.79455 * 64.85807 * 13 12 11 16 16 H 1.08996 * 111.51380 * 51.18593 * 15 13 12 17 17 C 1.53748 * 100.21926 * 169.08590 * 15 13 12 18 18 C 1.55288 * 101.84078 * 320.90320 * 17 15 13 19 19 N 1.45467 * 117.34550 * 181.90934 * 13 12 11 20 20 C 1.36932 * 126.40872 * 30.88502 * 19 13 12 21 21 H 1.08002 * 119.99998 * 359.71043 * 20 19 13 22 22 C 1.38810 * 120.00253 * 179.70867 * 20 19 13 23 23 N 1.31626 * 119.99903 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47013 * 90.00330 * 24 22 20 26 26 H 1.48500 * 109.47135 * 210.00107 * 24 22 20 27 27 H 1.48498 * 109.46943 * 330.00267 * 24 22 20 28 28 C 1.47722 * 119.68080 * 180.02562 * 10 8 7 29 29 C 1.38230 * 120.00292 * 0.27894 * 6 5 4 30 30 C 1.38234 * 120.00386 * 270.02623 * 3 2 1 31 31 H 1.09002 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47212 * 299.99380 * 1 2 3 33 33 H 1.09001 * 109.47772 * 59.99612 * 1 2 3 34 34 H 1.09006 * 109.46885 * 240.00600 * 2 1 3 35 35 H 1.08996 * 109.47688 * 120.00854 * 2 1 3 36 36 H 1.07998 * 120.00338 * 0.02562 * 4 3 2 37 37 H 1.08001 * 120.00470 * 180.02562 * 5 4 3 38 38 H 1.08994 * 109.46893 * 330.00303 * 7 6 5 39 39 H 1.08993 * 109.47046 * 209.99867 * 7 6 5 40 40 H 1.09003 * 109.25632 * 107.56789 * 11 10 8 41 41 H 1.08996 * 109.22651 * 348.11170 * 11 10 8 42 42 H 1.08993 * 109.87973 * 189.48543 * 12 11 10 43 43 H 1.08996 * 109.94113 * 68.44032 * 12 11 10 44 44 H 1.09000 * 110.95285 * 202.77199 * 17 15 13 45 45 H 1.08994 * 110.99021 * 79.05655 * 17 15 13 46 46 H 1.08998 * 109.92258 * 263.13469 * 18 17 15 47 47 H 1.08998 * 109.92218 * 141.83292 * 18 17 15 48 48 H 0.97005 * 119.99956 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.07017 * 8.70660 * 28 10 8 50 50 H 1.09000 * 110.06560 * 247.12940 * 28 10 8 51 51 H 1.08000 * 120.00206 * 179.72727 * 29 6 5 52 52 H 1.08005 * 119.99694 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7241 3.3754 1.1973 6 6 2.9555 4.0268 0.0002 7 6 3.4579 5.4476 0.0003 8 6 4.9650 5.4474 0.0014 9 8 5.5712 4.3970 0.0026 10 7 5.6389 6.6146 0.0022 11 6 4.8990 7.8801 0.0014 12 6 5.4623 8.8355 -1.0665 13 6 6.9615 8.9100 -0.8603 14 1 7.1605 9.1765 0.1777 15 6 7.5509 7.5018 -1.1484 16 1 7.2143 7.1169 -2.1110 17 6 9.0518 7.8343 -1.1737 18 6 9.0621 9.2059 -1.9019 19 7 7.7131 9.7958 -1.7358 20 6 7.2607 10.9601 -2.2967 21 1 6.2522 11.2958 -2.1048 22 6 8.0980 11.7091 -3.1120 23 7 9.3269 11.2998 -3.3463 24 14 7.4805 13.2972 -3.8777 25 1 7.7666 14.4317 -2.9632 26 1 8.1681 13.5214 -5.1747 27 1 6.0161 13.2009 -4.1040 28 6 7.1161 6.6063 0.0028 29 6 2.7201 3.3770 -1.1970 30 6 2.2622 2.0727 -1.1971 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3635 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 2.0831 1.5631 2.1325 37 1 2.9045 3.8844 2.1327 38 1 3.0939 5.9616 0.8898 39 1 3.0954 5.9612 -0.8901 40 1 4.9846 8.3472 0.9826 41 1 3.8487 7.6817 -0.2118 42 1 5.0220 9.8254 -0.9474 43 1 5.2438 8.4501 -2.0624 44 1 9.6070 7.0875 -1.7413 45 1 9.4483 7.9268 -0.1627 46 1 9.2769 9.0625 -2.9609 47 1 9.8108 9.8588 -1.4535 48 1 9.9120 11.8230 -3.9163 49 1 7.4845 5.5923 -0.1525 50 1 7.4919 7.0016 0.9465 51 1 2.8967 3.8874 -2.1323 52 1 2.0814 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036830073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:14 Heat of formation + Delta-G solvation = -9.180541 kcal Electronic energy + Delta-G solvation = -29774.422250 eV Core-core repulsion = 25931.059334 eV Total energy + Delta-G solvation = -3843.362916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.57515 -40.41609 -39.45785 -36.77691 -35.53147 -34.54757 -33.01638 -32.40727 -31.77532 -31.18613 -29.77929 -28.01124 -26.65492 -25.05853 -23.90411 -23.68699 -23.61178 -21.90362 -21.61970 -21.11345 -19.97980 -18.65934 -17.85611 -17.29210 -16.93602 -16.85173 -16.53487 -16.13200 -15.96887 -15.81757 -15.61961 -15.07331 -14.81678 -14.57068 -14.52558 -14.26180 -14.21278 -14.07404 -13.82614 -13.64543 -13.34721 -13.18487 -13.10167 -12.90692 -12.84722 -12.68147 -12.51735 -12.43900 -12.09306 -12.03633 -11.99049 -11.78051 -11.66806 -11.63003 -11.59569 -11.50423 -10.99953 -10.79519 -10.70035 -9.76331 -9.65750 -9.37823 -8.86632 -7.82440 -5.16885 0.42842 0.56277 1.46538 1.48169 1.56386 1.65528 2.02163 2.51290 2.88000 3.36526 3.45264 3.69934 3.74343 3.87013 3.91046 3.94888 3.99231 4.04898 4.17315 4.20915 4.24389 4.24958 4.42307 4.48637 4.51653 4.53168 4.60161 4.62456 4.66958 4.73351 4.75602 4.79122 4.83963 4.85980 4.93524 5.05789 5.07488 5.08423 5.10378 5.20449 5.24630 5.25890 5.40098 5.47669 5.54605 5.55447 5.58637 5.66534 5.71707 5.76575 5.76759 6.16666 6.21388 6.44467 7.09921 7.19959 7.80607 8.49736 9.29610 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002093 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.499541 B =13374.165773 C =13839.629372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.083 4.083 7 C -0.097 4.097 8 C 0.513 3.487 9 O -0.580 6.580 10 N -0.610 5.610 11 C 0.117 3.883 12 C -0.125 4.125 13 C 0.157 3.843 14 H 0.022 0.978 15 C -0.108 4.108 16 H 0.060 0.940 17 C -0.123 4.123 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.227 4.227 21 H 0.090 0.910 22 C -0.074 4.074 23 N -0.956 5.956 24 Si 0.975 3.025 25 H -0.288 1.288 26 H -0.300 1.300 27 H -0.265 1.265 28 C 0.136 3.864 29 C -0.120 4.120 30 C -0.130 4.130 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.015 0.985 47 H 0.004 0.996 48 H 0.244 0.756 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.122 0.878 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 -18.258 10.437 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.136 4.136 8 C 0.302 3.698 9 O -0.460 6.460 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.164 4.164 13 C 0.050 3.950 14 H 0.040 0.960 15 C -0.129 4.129 16 H 0.078 0.922 17 C -0.162 4.162 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.356 4.356 21 H 0.108 0.892 22 C -0.266 4.266 23 N -0.605 5.605 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.227 1.227 27 H -0.190 1.190 28 C 0.013 3.987 29 C -0.138 4.138 30 C -0.148 4.148 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.033 0.967 47 H 0.022 0.978 48 H 0.053 0.947 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.140 0.860 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.971 -18.610 10.313 27.851 hybrid contribution 0.695 1.338 -0.991 1.805 sum -17.276 -17.272 9.322 26.147 Atomic orbital electron populations 1.21718 0.93937 1.02379 1.01957 1.20580 0.96758 0.91483 1.03354 1.20179 0.98815 0.97167 0.93075 1.21231 1.00172 0.94828 0.98298 1.21209 0.98880 0.95385 0.97748 1.19487 0.99535 0.95530 0.93790 1.20795 0.89916 0.95523 1.07362 1.21129 0.91027 0.82677 0.74936 1.90681 1.71286 1.32384 1.51658 1.48403 1.06635 1.06618 1.72587 1.21922 0.96703 0.82500 0.99434 1.21836 0.95473 0.99968 0.99132 1.20878 0.92553 0.88700 0.92868 0.96047 1.22437 0.96069 0.96221 0.98131 0.92150 1.22591 0.95643 0.96904 1.01059 1.21285 0.86234 0.90215 0.96526 1.44499 1.10649 1.23139 1.55724 1.19425 0.97512 0.96893 1.21745 0.89221 1.25657 0.96543 1.02604 1.01799 1.70179 1.07453 1.40227 1.42665 0.85117 0.77901 0.79556 0.77030 1.21500 1.22731 1.18952 1.21394 0.79433 1.00232 0.97634 1.21189 0.99259 0.95525 0.97816 1.21201 1.00406 0.94770 0.98397 0.91185 0.92683 0.92962 0.90737 0.90403 0.84595 0.85052 0.85082 0.86092 0.89604 0.86478 0.90424 0.92787 0.90721 0.90384 0.96656 0.97792 0.94695 0.90015 0.90006 0.85976 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.89 71.98 0.71 -0.83 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 5 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 6 C -0.08 -1.75 4.37 -19.86 -0.09 -1.83 16 7 C -0.10 -1.71 4.16 29.11 0.12 -1.59 16 8 C 0.51 13.28 7.66 87.66 0.67 13.95 16 9 O -0.58 -19.94 15.39 -3.03 -0.05 -19.99 16 10 N -0.61 -15.37 3.00 -818.09 -2.45 -17.82 16 11 C 0.12 2.41 6.21 86.68 0.54 2.95 16 12 C -0.12 -3.76 5.49 30.43 0.17 -3.59 16 13 C 0.16 5.95 2.57 45.51 0.12 6.07 16 14 H 0.02 0.84 7.92 -2.38 -0.02 0.82 16 15 C -0.11 -3.75 2.86 -10.00 -0.03 -3.78 16 16 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 17 C -0.12 -4.57 6.54 31.63 0.21 -4.36 16 18 C 0.18 9.09 5.45 86.84 0.47 9.56 16 19 N -0.62 -30.71 3.35 -669.92 -2.24 -32.95 16 20 C -0.23 -12.25 9.88 84.03 0.83 -11.42 16 21 H 0.09 4.51 7.22 -2.91 -0.02 4.49 16 22 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 23 N -0.96 -57.95 10.44 21.65 0.23 -57.73 16 24 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 28 C 0.14 3.89 5.95 85.88 0.51 4.41 16 29 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 30 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 35 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.13 1.53 7.93 -2.39 -0.02 1.51 16 39 H 0.12 1.71 7.49 -2.39 -0.02 1.69 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.60 5.83 -2.39 -0.01 1.59 16 42 H 0.08 2.33 7.62 -2.39 -0.02 2.31 16 43 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 46 H 0.02 0.86 7.23 -2.39 -0.02 0.84 16 47 H 0.00 0.21 7.76 -2.39 -0.02 0.20 16 48 H 0.24 14.49 8.31 -92.70 -0.77 13.72 16 49 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 50 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 51 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 52 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -73.30 405.43 4.03 -69.27 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.88 Total: 17.60 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.64 Total: -5.77 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.47 Total: -108.50 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.30 4.03 -69.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.085 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds