Wall clock time and date at job start Wed Apr 1 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 C 1.50699 * 109.47408 * 240.00008 * 2 1 3 5 5 O 1.21276 * 120.00232 * 118.23024 * 4 2 1 6 6 N 1.34779 * 119.99482 * 298.23264 * 4 2 1 7 7 C 1.46530 * 120.98118 * 3.96387 * 6 4 2 8 8 C 1.51783 * 110.13344 * 233.77275 * 7 6 4 9 9 C 1.49521 * 115.07317 * 318.39390 * 8 7 6 10 10 H 1.08995 * 105.91892 * 156.45441 * 9 8 7 11 11 C 1.52669 * 116.96511 * 39.06029 * 9 8 7 12 12 H 1.08993 * 112.03012 * 82.85192 * 11 9 8 13 13 C 1.55238 * 102.12028 * 202.30424 * 11 9 8 14 14 C 1.55101 * 100.53444 * 38.95673 * 13 11 9 15 15 N 1.46257 * 114.17701 * 272.08748 * 9 8 7 16 16 C 1.36940 * 125.96387 * 315.57084 * 15 9 8 17 17 H 1.08002 * 119.99521 * 340.26956 * 16 15 9 18 18 C 1.38803 * 119.99867 * 160.27295 * 16 15 9 19 19 N 1.31625 * 120.00430 * 357.19138 * 18 16 15 20 20 Si 1.86798 * 119.99948 * 177.19165 * 18 16 15 21 21 H 1.48507 * 109.47105 * 94.96251 * 20 18 16 22 22 H 1.48500 * 109.47444 * 214.96164 * 20 18 16 23 23 H 1.48506 * 109.47347 * 334.96341 * 20 18 16 24 24 C 1.46697 * 120.97267 * 183.68326 * 6 4 2 25 25 C 1.50697 * 109.47049 * 119.99776 * 2 1 3 26 26 C 1.38239 * 119.99878 * 317.48396 * 25 2 1 27 27 C 1.38242 * 119.99934 * 180.27780 * 26 25 2 28 28 C 1.38235 * 119.99589 * 359.46677 * 27 26 25 29 29 C 1.38239 * 120.00372 * 0.55111 * 28 27 26 30 30 C 1.38233 * 120.00175 * 137.50544 * 25 2 1 31 31 H 1.08996 * 109.47356 * 291.78315 * 1 2 3 32 32 H 1.09006 * 109.47203 * 51.78751 * 1 2 3 33 33 H 1.09000 * 109.47017 * 171.78383 * 1 2 3 34 34 H 1.08997 * 109.46976 * 176.51803 * 3 2 1 35 35 H 1.08998 * 109.46941 * 296.51356 * 3 2 1 36 36 H 1.08993 * 109.47159 * 56.51711 * 3 2 1 37 37 H 1.08995 * 109.36016 * 353.97472 * 7 6 4 38 38 H 1.08998 * 109.35923 * 113.56393 * 7 6 4 39 39 H 1.08994 * 108.36477 * 79.84806 * 8 7 6 40 40 H 1.08999 * 108.36024 * 197.12752 * 8 7 6 41 41 H 1.08995 * 111.86910 * 280.97699 * 13 11 9 42 42 H 1.08995 * 110.84219 * 156.50208 * 13 11 9 43 43 H 1.08997 * 110.35500 * 203.49159 * 14 13 11 44 44 H 1.09001 * 110.44313 * 81.25364 * 14 13 11 45 45 H 0.96995 * 120.00416 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.52768 * 241.06995 * 24 6 4 47 47 H 1.08997 * 109.52649 * 1.28184 * 24 6 4 48 48 H 1.07997 * 120.00416 * 359.97438 * 26 25 2 49 49 H 1.07993 * 120.00253 * 179.72137 * 27 26 25 50 50 H 1.08005 * 119.99680 * 180.28145 * 28 27 26 51 51 H 1.07998 * 120.00129 * 179.71802 * 29 28 27 52 52 H 1.08002 * 119.99793 * 0.02562 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7029 -0.1121 -2.0448 6 7 1.7364 -2.0107 -1.4258 7 6 0.8574 -2.7313 -0.5011 8 6 1.5435 -3.9897 -0.0017 9 6 2.2987 -4.7547 -1.0410 10 1 3.0465 -5.3351 -0.5005 11 6 3.0756 -3.9399 -2.0721 12 1 4.0509 -3.6296 -1.6974 13 6 3.2106 -4.9452 -3.2474 14 6 1.8152 -5.6208 -3.2043 15 7 1.4923 -5.7356 -1.7668 16 6 0.5953 -6.6084 -1.2111 17 1 0.6525 -6.8444 -0.1588 18 6 -0.3873 -7.1899 -2.0005 19 7 -0.4917 -6.8605 -3.2706 20 14 -1.5615 -8.4400 -1.2603 21 1 -2.8080 -7.7555 -0.8325 22 1 -1.8878 -9.4740 -2.2750 23 1 -0.9222 -9.0843 -0.0849 24 6 2.2800 -2.7445 -2.5739 25 6 2.0323 -0.7103 1.2305 26 6 1.4307 -0.4825 2.4541 27 6 1.8952 -1.1298 3.5838 28 6 2.9541 -2.0132 3.4880 29 6 3.5560 -2.2407 2.2645 30 6 3.0949 -1.5894 1.1357 31 1 -0.3634 0.3813 0.9542 32 1 -0.3634 0.6357 -0.8075 33 1 -0.3633 -1.0171 -0.1469 34 1 3.1281 1.4432 0.0624 35 1 1.7285 1.9380 -0.9196 36 1 1.6265 1.9740 0.8571 37 1 0.6198 -2.0886 0.3465 38 1 -0.0643 -3.0023 -1.0160 39 1 2.2374 -3.7109 0.7913 40 1 0.7860 -4.6484 0.4230 41 1 4.0039 -5.6716 -3.0712 42 1 3.3636 -4.4208 -4.1906 43 1 1.8578 -6.6085 -3.6632 44 1 1.0758 -5.0000 -3.7104 45 1 -1.1781 -7.2671 -3.8222 46 1 1.4615 -3.1001 -3.1996 47 1 2.9248 -2.0855 -3.1553 48 1 0.6010 0.2048 2.5283 49 1 1.4281 -0.9484 4.5405 50 1 3.3141 -2.5223 4.3699 51 1 4.3862 -2.9275 2.1905 52 1 3.5654 -1.7668 0.1799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036885007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:15 Heat of formation + Delta-G solvation = 29.920610 kcal Electronic energy + Delta-G solvation = -32699.327914 eV Core-core repulsion = 28857.660551 eV Total energy + Delta-G solvation = -3841.667362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.21092 -39.03720 -38.24594 -35.40286 -34.98432 -32.77567 -31.73858 -30.95718 -29.82158 -29.41502 -28.04248 -27.04177 -25.70269 -24.35140 -23.26247 -22.59808 -22.45674 -21.12841 -20.15412 -19.07023 -18.25435 -17.32018 -16.44632 -16.39464 -15.89005 -15.26524 -15.18622 -14.76093 -14.60964 -14.50253 -14.03341 -13.83268 -13.79605 -13.57747 -13.33891 -12.95628 -12.66133 -12.65362 -12.40427 -12.20317 -12.13281 -12.00643 -11.82304 -11.67571 -11.45366 -11.25355 -11.12077 -11.00128 -10.93986 -10.79423 -10.65535 -10.48113 -10.16191 -10.06378 -9.87164 -9.73280 -9.66224 -9.41728 -8.85192 -8.66491 -8.59047 -8.16179 -6.69999 -5.79373 -3.15946 1.29626 1.38553 2.79014 3.27052 3.35462 3.42116 3.43342 3.73987 4.44199 4.46113 4.50685 4.87358 4.95096 4.98980 5.02452 5.10686 5.25261 5.26975 5.29731 5.41231 5.48224 5.49576 5.53469 5.56134 5.61439 5.66799 5.74366 5.74953 5.80662 5.93581 5.95983 5.99900 6.00588 6.08162 6.12819 6.18089 6.28337 6.36828 6.39906 6.43545 6.49910 6.52070 6.54915 6.60972 6.70014 6.80430 6.94984 6.98059 7.05914 7.43747 7.62352 7.74974 7.75490 8.26482 8.38836 9.16077 9.78697 10.52012 11.33687 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.004247 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.214914 B = 6591.675733 C = 7360.726035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.041 4.041 3 C -0.120 4.120 4 C 0.525 3.475 5 O -0.550 6.550 6 N -0.595 5.595 7 C 0.106 3.894 8 C -0.138 4.138 9 C 0.176 3.824 10 H 0.005 0.995 11 C -0.104 4.104 12 H 0.069 0.931 13 C -0.144 4.144 14 C 0.173 3.827 15 N -0.590 5.590 16 C -0.229 4.229 17 H 0.072 0.928 18 C 0.001 3.999 19 N -0.912 5.912 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.119 3.881 25 C -0.072 4.072 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.113 4.113 30 C -0.100 4.100 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.035 0.965 45 H 0.253 0.747 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 13.405 10.170 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.044 4.044 3 C -0.177 4.177 4 C 0.313 3.687 5 O -0.428 6.428 6 N -0.326 5.326 7 C -0.017 4.017 8 C -0.177 4.177 9 C 0.068 3.932 10 H 0.023 0.977 11 C -0.124 4.124 12 H 0.087 0.913 13 C -0.183 4.183 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.358 4.358 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.558 5.558 20 Si 0.735 3.265 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.003 4.003 25 C -0.073 4.073 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.139 4.139 29 C -0.131 4.131 30 C -0.118 4.118 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.001 13.558 9.653 17.379 hybrid contribution -0.783 -0.938 0.377 1.279 sum 4.219 12.620 10.030 16.663 Atomic orbital electron populations 1.22327 0.91987 1.04249 1.03028 1.19739 0.97328 0.96414 0.90918 1.21632 1.01701 0.92285 1.02114 1.20260 0.79831 0.81651 0.86947 1.90650 1.40176 1.65716 1.46264 1.47925 1.48171 1.09430 1.27082 1.21706 0.93127 0.93819 0.92999 1.21300 1.01050 0.96133 0.99238 1.19476 0.92460 0.89613 0.91640 0.97696 1.21914 0.97894 0.94943 0.97624 0.91252 1.23098 1.00950 0.97748 0.96510 1.21432 0.89140 0.98569 0.86023 1.44455 1.47608 1.36895 1.02533 1.18852 1.05370 1.17254 0.94276 0.91057 1.24982 0.97706 1.00669 0.96281 1.69924 1.35241 1.45279 1.05312 0.86224 0.81292 0.80843 0.78145 1.21555 1.21704 1.20541 1.21470 0.98582 0.92526 0.87688 1.19471 0.96567 0.97450 0.93765 1.20937 1.00039 1.00338 0.91851 1.21068 0.97179 0.97335 0.98212 1.21137 0.96652 0.98470 0.97620 1.21113 1.00015 0.99446 0.92526 1.21154 0.96097 0.95670 0.98923 0.91109 0.91620 0.90222 0.92015 0.91494 0.92069 0.89200 0.91295 0.92487 0.90153 0.91892 0.92000 0.92900 0.94687 0.93684 0.90465 0.89805 0.85908 0.86178 0.86257 0.86050 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 7.87 37.16 0.29 -1.44 16 2 C -0.04 -0.51 0.61 -156.81 -0.10 -0.61 16 3 C -0.12 -1.37 7.76 37.16 0.29 -1.08 16 4 C 0.53 8.32 4.97 -10.98 -0.05 8.26 16 5 O -0.55 -10.22 15.37 5.56 0.09 -10.14 16 6 N -0.60 -9.65 2.29 -174.78 -0.40 -10.05 16 7 C 0.11 1.70 3.93 -4.64 -0.02 1.68 16 8 C -0.14 -2.42 5.41 -29.07 -0.16 -2.58 16 9 C 0.18 3.48 2.68 -69.95 -0.19 3.29 16 10 H 0.01 0.11 8.08 -51.93 -0.42 -0.31 16 11 C -0.10 -1.82 3.47 -90.06 -0.31 -2.14 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.14 -2.64 6.51 -24.43 -0.16 -2.80 16 14 C 0.17 4.01 4.90 -2.23 -0.01 4.00 16 15 N -0.59 -14.14 3.31 -165.69 -0.55 -14.69 16 16 C -0.23 -6.03 9.19 -15.06 -0.14 -6.17 16 17 H 0.07 1.85 7.66 -52.49 -0.40 1.45 16 18 C 0.00 0.04 5.45 -17.43 -0.09 -0.05 16 19 N -0.91 -25.87 10.92 55.49 0.61 -25.26 16 20 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.08 5.58 -4.39 -0.02 2.05 16 25 C -0.07 -0.87 2.80 -104.62 -0.29 -1.16 16 26 C -0.11 -1.18 9.11 -39.58 -0.36 -1.54 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 29 C -0.11 -1.32 9.02 -39.58 -0.36 -1.68 16 30 C -0.10 -1.31 6.14 -39.58 -0.24 -1.55 16 31 H 0.07 0.61 6.29 -51.93 -0.33 0.28 16 32 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.08 0.95 4.79 -51.93 -0.25 0.70 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.26 3.25 -51.93 -0.17 1.09 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 0.91 5.03 -51.93 -0.26 0.65 16 40 H 0.08 1.58 7.00 -51.93 -0.36 1.21 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 43 H 0.05 1.36 7.56 -51.93 -0.39 0.97 16 44 H 0.04 0.89 6.76 -51.93 -0.35 0.53 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 46 H 0.08 1.49 6.50 -51.93 -0.34 1.16 16 47 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 48 H 0.12 1.03 6.50 -52.49 -0.34 0.69 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 50 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 51 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 52 H 0.12 1.79 6.35 -52.49 -0.33 1.46 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -29.94 378.35 -10.38 -40.32 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.08 Total: 4.49 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.72 Total: -6.73 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.34 Total: -49.99 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.94 -10.38 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.239 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds