Wall clock time and date at job start Wed Apr 1 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.50700 * 109.47013 * 120.00515 * 2 1 3 5 5 O 1.21287 * 119.99599 * 242.75563 * 4 2 1 6 6 N 1.34774 * 119.99969 * 62.75690 * 4 2 1 7 7 C 1.46593 * 119.68643 * 356.62627 * 6 4 2 8 8 C 1.53953 * 110.58567 * 132.18704 * 7 6 4 9 9 C 1.51522 * 107.34415 * 51.04408 * 8 7 6 10 10 H 1.09003 * 108.81239 * 53.45159 * 9 8 7 11 11 C 1.55361 * 107.78487 * 295.14565 * 9 8 7 12 12 H 1.08997 * 111.50531 * 308.83275 * 11 9 8 13 13 C 1.53739 * 100.22276 * 190.93879 * 11 9 8 14 14 C 1.55293 * 101.84510 * 39.09175 * 13 11 9 15 15 N 1.45469 * 117.33834 * 178.10337 * 9 8 7 16 16 C 1.36939 * 126.40916 * 329.38007 * 15 9 8 17 17 H 1.07994 * 119.99666 * 359.97438 * 16 15 9 18 18 C 1.38810 * 120.00237 * 179.97438 * 16 15 9 19 19 N 1.31627 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46714 * 90.00337 * 20 18 16 22 22 H 1.48493 * 109.47474 * 210.00228 * 20 18 16 23 23 H 1.48495 * 109.47172 * 330.00663 * 20 18 16 24 24 C 1.47717 * 119.68221 * 176.62253 * 6 4 2 25 25 C 1.50701 * 109.46727 * 240.00298 * 2 1 3 26 26 C 1.38232 * 119.99977 * 231.82703 * 25 2 1 27 27 C 1.38236 * 120.00407 * 179.79211 * 26 25 2 28 28 C 1.38237 * 119.99590 * 0.45629 * 27 26 25 29 29 C 1.38232 * 120.00012 * 359.77505 * 28 27 26 30 30 C 1.38236 * 120.00037 * 52.10120 * 25 2 1 31 31 H 1.09000 * 109.47142 * 307.71625 * 1 2 3 32 32 H 1.09001 * 109.47265 * 67.70984 * 1 2 3 33 33 H 1.08993 * 109.47445 * 187.71741 * 1 2 3 34 34 H 1.09004 * 109.47120 * 175.88744 * 3 2 1 35 35 H 1.08999 * 109.47533 * 295.89274 * 3 2 1 36 36 H 1.09000 * 109.46796 * 55.89254 * 3 2 1 37 37 H 1.08998 * 109.25457 * 11.90140 * 7 6 4 38 38 H 1.08998 * 109.22329 * 252.45259 * 7 6 4 39 39 H 1.09001 * 109.88179 * 291.58964 * 8 7 6 40 40 H 1.09001 * 109.94235 * 170.54161 * 8 7 6 41 41 H 1.08998 * 110.95836 * 157.22624 * 13 11 9 42 42 H 1.09003 * 110.95746 * 280.91482 * 13 11 9 43 43 H 1.09000 * 109.92208 * 96.86592 * 14 13 11 44 44 H 1.09001 * 109.91852 * 218.17406 * 14 13 11 45 45 H 0.96992 * 119.99867 * 179.97438 * 19 18 16 46 46 H 1.09008 * 110.06681 * 112.83955 * 24 6 4 47 47 H 1.09005 * 110.07123 * 351.26824 * 24 6 4 48 48 H 1.08006 * 119.99972 * 359.97438 * 26 25 2 49 49 H 1.08002 * 120.00586 * 180.25098 * 27 26 25 50 50 H 1.08004 * 119.99871 * 179.79156 * 28 27 26 51 51 H 1.08007 * 120.00148 * 179.97438 * 29 28 27 52 52 H 1.07996 * 120.00252 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6878 -0.1075 2.0537 6 7 1.7532 -2.0159 1.4159 7 6 0.8987 -2.7193 0.4546 8 6 1.5359 -4.0590 0.0429 9 6 1.8991 -4.7965 1.3157 10 1 1.0151 -4.8584 1.9505 11 6 2.9954 -3.9722 2.0454 12 1 3.8206 -3.7253 1.3775 13 6 3.4289 -4.9844 3.1183 14 6 3.3947 -6.3208 2.3282 15 7 2.4840 -6.1211 1.1766 16 6 2.2392 -7.0160 0.1694 17 1 1.5519 -6.7615 -0.6238 18 6 2.8746 -8.2501 0.1678 19 7 3.7120 -8.5605 1.1347 20 14 2.5402 -9.4710 -1.2058 21 1 3.5075 -9.2500 -2.3108 22 1 2.6899 -10.8540 -0.6862 23 1 1.1576 -9.2795 -1.7126 24 6 2.3113 -2.7243 2.5858 25 6 2.0322 -0.7104 -1.2305 26 6 2.9601 -1.7279 -1.1108 27 6 3.4177 -2.3825 -2.2392 28 6 2.9543 -2.0131 -3.4881 29 6 2.0300 -0.9923 -3.6082 30 6 1.5692 -0.3406 -2.4795 31 1 -0.3633 0.6287 0.8129 32 1 -0.3634 0.3898 -0.9509 33 1 -0.3634 -1.0183 0.1380 34 1 3.1276 1.4433 0.0737 35 1 1.7381 1.9347 -0.9245 36 1 1.6178 1.9771 0.8509 37 1 0.7659 -2.0974 -0.4306 38 1 -0.0734 -2.9086 0.9100 39 1 2.4331 -3.8764 -0.5485 40 1 0.8237 -4.6471 -0.5360 41 1 4.4361 -4.7678 3.4743 42 1 2.7204 -5.0022 3.9465 43 1 4.3949 -6.5676 1.9722 44 1 3.0169 -7.1198 2.9661 45 1 4.1557 -9.4230 1.1338 46 1 1.5107 -3.0034 3.2710 47 1 3.0373 -2.0906 3.0954 48 1 3.3255 -2.0136 -0.1354 49 1 4.1396 -3.1803 -2.1453 50 1 3.3143 -2.5222 -4.3699 51 1 1.6682 -0.7033 -4.5840 52 1 0.8473 0.4571 -2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036885008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:23 Heat of formation + Delta-G solvation = 35.841581 kcal Electronic energy + Delta-G solvation = -32487.759113 eV Core-core repulsion = 28646.348503 eV Total energy + Delta-G solvation = -3841.410610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.42512 -38.97463 -38.29308 -35.53545 -35.19732 -32.65844 -31.62855 -30.87266 -29.83984 -29.62503 -28.30726 -27.19207 -25.24430 -24.36055 -23.09292 -22.48330 -22.34135 -21.03447 -20.08608 -19.54921 -18.76391 -17.49519 -16.55376 -16.21614 -15.90652 -15.26872 -15.14902 -14.83936 -14.65616 -14.31472 -14.11007 -13.97366 -13.79978 -13.69363 -13.33585 -12.96930 -12.85535 -12.53529 -12.47605 -12.31611 -12.15632 -12.12154 -11.93372 -11.63862 -11.55146 -11.43765 -11.15216 -11.09294 -10.83942 -10.82646 -10.71101 -10.66549 -10.16174 -10.08686 -9.88801 -9.63256 -9.52610 -9.43600 -8.84297 -8.64475 -8.62964 -8.45469 -6.84213 -5.72497 -3.05459 1.29579 1.40684 2.66134 3.06890 3.37978 3.43277 3.45217 3.74832 4.31653 4.43832 4.48295 4.81193 4.89892 4.96412 5.00148 5.06201 5.14949 5.17013 5.25712 5.35742 5.40741 5.46479 5.50109 5.53245 5.57711 5.62431 5.63744 5.69384 5.72730 5.82202 5.90661 5.91529 5.98989 6.02199 6.05178 6.12217 6.16906 6.21242 6.25508 6.37591 6.44799 6.49199 6.53192 6.57912 6.61577 6.66114 6.84725 6.97379 7.06918 7.50140 7.54848 7.60760 7.80021 8.23309 8.23736 9.18619 9.82297 10.50478 11.40028 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004263 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.328668 B = 6566.619732 C = 8024.014782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.041 4.041 3 C -0.121 4.121 4 C 0.524 3.476 5 O -0.544 6.544 6 N -0.603 5.603 7 C 0.096 3.904 8 C -0.135 4.135 9 C 0.169 3.831 10 H 0.017 0.983 11 C -0.124 4.124 12 H 0.078 0.922 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.594 5.594 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.125 3.875 25 C -0.079 4.079 26 C -0.108 4.108 27 C -0.109 4.109 28 C -0.118 4.118 29 C -0.121 4.121 30 C -0.114 4.114 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.252 0.748 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.121 0.879 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 17.649 -4.884 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.044 4.044 3 C -0.179 4.179 4 C 0.312 3.688 5 O -0.421 6.421 6 N -0.335 5.335 7 C -0.027 4.027 8 C -0.174 4.174 9 C 0.061 3.939 10 H 0.035 0.965 11 C -0.144 4.144 12 H 0.096 0.904 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.318 5.318 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.003 3.997 25 C -0.080 4.080 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.136 4.136 29 C -0.139 4.139 30 C -0.132 4.132 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.147 0.853 49 H 0.144 0.856 50 H 0.139 0.861 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.012 17.696 -4.491 18.932 hybrid contribution -0.169 -0.989 -0.767 1.263 sum -5.181 16.706 -5.258 18.265 Atomic orbital electron populations 1.22235 0.91913 1.03851 1.03084 1.19747 0.97266 0.96527 0.90852 1.21656 1.02137 0.92202 1.01855 1.20380 0.79542 0.81830 0.87087 1.90665 1.40083 1.65719 1.45676 1.48327 1.49991 1.09242 1.25958 1.22282 0.92836 0.94878 0.92688 1.22044 1.01868 0.93912 0.99561 1.20618 0.93579 0.86156 0.93570 0.96528 1.22622 0.99052 0.93718 0.99022 0.90369 1.22716 1.00047 0.97579 0.97150 1.21530 0.95249 0.90690 0.87234 1.44195 1.50070 1.11505 1.26030 1.18975 1.21340 0.94117 1.00753 0.90457 1.24771 0.99381 0.97809 0.98398 1.69939 1.32008 1.22245 1.32689 0.86180 0.77708 0.80887 0.81370 1.21679 1.21727 1.20743 1.21631 0.97902 0.93241 0.86933 1.19435 0.98198 0.96794 0.93546 1.21440 0.96398 0.95036 0.99700 1.21218 0.99787 0.99408 0.92295 1.21184 0.97501 0.97342 0.97576 1.21065 0.97915 0.96744 0.98217 1.20849 1.00499 1.00220 0.91606 0.91673 0.91083 0.90684 0.91775 0.91967 0.91700 0.88421 0.91981 0.90455 0.90875 0.92102 0.92356 0.92728 0.94409 0.93793 0.91339 0.89300 0.85295 0.85644 0.86144 0.86199 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.99 37.16 0.30 -1.13 16 2 C -0.04 -0.47 0.59 -156.81 -0.09 -0.56 16 3 C -0.12 -1.30 7.71 37.16 0.29 -1.01 16 4 C 0.52 7.64 5.21 -10.99 -0.06 7.58 16 5 O -0.54 -9.53 15.34 5.55 0.09 -9.45 16 6 N -0.60 -8.63 1.96 -172.49 -0.34 -8.97 16 7 C 0.10 1.30 3.52 -3.49 -0.01 1.28 16 8 C -0.13 -2.25 5.07 -26.98 -0.14 -2.39 16 9 C 0.17 3.30 2.57 -67.98 -0.17 3.12 16 10 H 0.02 0.35 7.92 -51.93 -0.41 -0.06 16 11 C -0.12 -2.16 2.86 -89.37 -0.26 -2.41 16 12 H 0.08 1.46 7.89 -51.93 -0.41 1.05 16 13 C -0.14 -2.50 6.54 -25.13 -0.16 -2.66 16 14 C 0.18 4.20 5.45 -1.91 -0.01 4.19 16 15 N -0.59 -14.46 3.35 -163.08 -0.55 -15.01 16 16 C -0.22 -5.97 9.88 -15.06 -0.15 -6.11 16 17 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.61 10.44 55.49 0.58 -26.03 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.12 1.90 5.94 -3.77 -0.02 1.88 16 25 C -0.08 -0.93 2.98 -104.62 -0.31 -1.24 16 26 C -0.11 -1.45 5.68 -39.58 -0.22 -1.68 16 27 C -0.11 -1.42 9.07 -39.58 -0.36 -1.78 16 28 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 29 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 30 C -0.11 -1.14 8.68 -39.58 -0.34 -1.49 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.53 6.71 -51.93 -0.35 0.18 16 33 H 0.07 0.72 4.86 -51.93 -0.25 0.47 16 34 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 35 H 0.06 0.53 7.78 -51.93 -0.40 0.13 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.20 3.09 -51.93 -0.16 1.04 16 38 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 39 H 0.08 1.34 5.04 -51.93 -0.26 1.08 16 40 H 0.07 1.27 7.62 -51.93 -0.40 0.88 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 43 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 44 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 47 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 48 H 0.13 1.98 5.10 -52.48 -0.27 1.72 16 49 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 50 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 51 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 52 H 0.12 0.95 7.02 -52.49 -0.37 0.58 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -30.62 378.53 -10.30 -40.93 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.14 Total: 4.18 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.62 Total: -8.05 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.30 Total: -50.00 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.62 -10.30 -40.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.767 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds