Wall clock time and date at job start Wed Apr 1 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.50700 * 109.47013 * 120.00515 * 2 1 3 5 5 O 1.21287 * 119.99599 * 242.75563 * 4 2 1 6 6 N 1.34774 * 119.99969 * 62.75690 * 4 2 1 7 7 C 1.46593 * 119.68643 * 356.62627 * 6 4 2 8 8 C 1.53953 * 110.58567 * 132.18704 * 7 6 4 9 9 C 1.51522 * 107.34415 * 51.04408 * 8 7 6 10 10 H 1.09003 * 108.81239 * 53.45159 * 9 8 7 11 11 C 1.55361 * 107.78487 * 295.14565 * 9 8 7 12 12 H 1.08997 * 111.50531 * 308.83275 * 11 9 8 13 13 C 1.53739 * 100.22276 * 190.93879 * 11 9 8 14 14 C 1.55293 * 101.84510 * 39.09175 * 13 11 9 15 15 N 1.45469 * 117.33834 * 178.10337 * 9 8 7 16 16 C 1.36939 * 126.40916 * 329.38007 * 15 9 8 17 17 H 1.07994 * 119.99666 * 359.97438 * 16 15 9 18 18 C 1.38810 * 120.00237 * 179.97438 * 16 15 9 19 19 N 1.31627 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46714 * 90.00337 * 20 18 16 22 22 H 1.48493 * 109.47474 * 210.00228 * 20 18 16 23 23 H 1.48495 * 109.47172 * 330.00663 * 20 18 16 24 24 C 1.47717 * 119.68221 * 176.62253 * 6 4 2 25 25 C 1.50701 * 109.46727 * 240.00298 * 2 1 3 26 26 C 1.38232 * 119.99977 * 231.82703 * 25 2 1 27 27 C 1.38236 * 120.00407 * 179.79211 * 26 25 2 28 28 C 1.38237 * 119.99590 * 0.45629 * 27 26 25 29 29 C 1.38232 * 120.00012 * 359.77505 * 28 27 26 30 30 C 1.38236 * 120.00037 * 52.10120 * 25 2 1 31 31 H 1.09000 * 109.47142 * 307.71625 * 1 2 3 32 32 H 1.09001 * 109.47265 * 67.70984 * 1 2 3 33 33 H 1.08993 * 109.47445 * 187.71741 * 1 2 3 34 34 H 1.09004 * 109.47120 * 175.88744 * 3 2 1 35 35 H 1.08999 * 109.47533 * 295.89274 * 3 2 1 36 36 H 1.09000 * 109.46796 * 55.89254 * 3 2 1 37 37 H 1.08998 * 109.25457 * 11.90140 * 7 6 4 38 38 H 1.08998 * 109.22329 * 252.45259 * 7 6 4 39 39 H 1.09001 * 109.88179 * 291.58964 * 8 7 6 40 40 H 1.09001 * 109.94235 * 170.54161 * 8 7 6 41 41 H 1.08998 * 110.95836 * 157.22624 * 13 11 9 42 42 H 1.09003 * 110.95746 * 280.91482 * 13 11 9 43 43 H 1.09000 * 109.92208 * 96.86592 * 14 13 11 44 44 H 1.09001 * 109.91852 * 218.17406 * 14 13 11 45 45 H 0.96992 * 119.99867 * 179.97438 * 19 18 16 46 46 H 1.09008 * 110.06681 * 112.83955 * 24 6 4 47 47 H 1.09005 * 110.07123 * 351.26824 * 24 6 4 48 48 H 1.08006 * 119.99972 * 359.97438 * 26 25 2 49 49 H 1.08002 * 120.00586 * 180.25098 * 27 26 25 50 50 H 1.08004 * 119.99871 * 179.79156 * 28 27 26 51 51 H 1.08007 * 120.00148 * 179.97438 * 29 28 27 52 52 H 1.07996 * 120.00252 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6878 -0.1075 2.0537 6 7 1.7532 -2.0159 1.4159 7 6 0.8987 -2.7193 0.4546 8 6 1.5359 -4.0590 0.0429 9 6 1.8991 -4.7965 1.3157 10 1 1.0151 -4.8584 1.9505 11 6 2.9954 -3.9722 2.0454 12 1 3.8206 -3.7253 1.3775 13 6 3.4289 -4.9844 3.1183 14 6 3.3947 -6.3208 2.3282 15 7 2.4840 -6.1211 1.1766 16 6 2.2392 -7.0160 0.1694 17 1 1.5519 -6.7615 -0.6238 18 6 2.8746 -8.2501 0.1678 19 7 3.7120 -8.5605 1.1347 20 14 2.5402 -9.4710 -1.2058 21 1 3.5075 -9.2500 -2.3108 22 1 2.6899 -10.8540 -0.6862 23 1 1.1576 -9.2795 -1.7126 24 6 2.3113 -2.7243 2.5858 25 6 2.0322 -0.7104 -1.2305 26 6 2.9601 -1.7279 -1.1108 27 6 3.4177 -2.3825 -2.2392 28 6 2.9543 -2.0131 -3.4881 29 6 2.0300 -0.9923 -3.6082 30 6 1.5692 -0.3406 -2.4795 31 1 -0.3633 0.6287 0.8129 32 1 -0.3634 0.3898 -0.9509 33 1 -0.3634 -1.0183 0.1380 34 1 3.1276 1.4433 0.0737 35 1 1.7381 1.9347 -0.9245 36 1 1.6178 1.9771 0.8509 37 1 0.7659 -2.0974 -0.4306 38 1 -0.0734 -2.9086 0.9100 39 1 2.4331 -3.8764 -0.5485 40 1 0.8237 -4.6471 -0.5360 41 1 4.4361 -4.7678 3.4743 42 1 2.7204 -5.0022 3.9465 43 1 4.3949 -6.5676 1.9722 44 1 3.0169 -7.1198 2.9661 45 1 4.1557 -9.4230 1.1338 46 1 1.5107 -3.0034 3.2710 47 1 3.0373 -2.0906 3.0954 48 1 3.3255 -2.0136 -0.1354 49 1 4.1396 -3.1803 -2.1453 50 1 3.3143 -2.5222 -4.3699 51 1 1.6682 -0.7033 -4.5840 52 1 0.8473 0.4571 -2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036885008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:20 Heat of formation + Delta-G solvation = 20.367610 kcal Electronic energy + Delta-G solvation = -32488.430114 eV Core-core repulsion = 28646.348503 eV Total energy + Delta-G solvation = -3842.081612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.51018 -40.25143 -39.50882 -36.90121 -36.24891 -34.47083 -33.08351 -31.81115 -31.33478 -30.67643 -29.79429 -28.06306 -26.80579 -25.86461 -24.18415 -23.75942 -23.41902 -22.13051 -21.84479 -20.97935 -19.87825 -18.76977 -18.08480 -17.41936 -17.03593 -16.90549 -16.26999 -16.15405 -15.86279 -15.64771 -15.54293 -15.10849 -15.01917 -14.75826 -14.53884 -14.31175 -14.06949 -13.96585 -13.64312 -13.39535 -13.24871 -13.16376 -13.08959 -12.94410 -12.88505 -12.77545 -12.68103 -12.52754 -12.09177 -12.07352 -11.98046 -11.94495 -11.77253 -11.65884 -11.57996 -11.48141 -11.00440 -10.70971 -10.64067 -9.75559 -9.65646 -9.52909 -8.86679 -7.82755 -5.16932 0.42047 0.52884 1.45498 1.46740 1.53704 1.55282 1.93392 2.50603 2.87499 3.30201 3.36104 3.48180 3.58056 3.82781 3.83242 3.95183 4.02372 4.09716 4.13706 4.18628 4.20314 4.22288 4.32929 4.38074 4.49750 4.61672 4.63027 4.66304 4.67654 4.77640 4.78990 4.82317 4.87662 4.88676 4.88872 4.93722 5.03041 5.06435 5.14255 5.17680 5.21976 5.24711 5.32451 5.46101 5.53681 5.54442 5.60294 5.64454 5.66214 5.69208 5.75826 6.11723 6.20897 6.36085 7.09321 7.09952 7.80243 8.49100 9.29183 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004263 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.328668 B = 6566.619732 C = 8024.014782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.036 4.036 3 C -0.119 4.119 4 C 0.520 3.480 5 O -0.578 6.578 6 N -0.602 5.602 7 C 0.107 3.893 8 C -0.128 4.128 9 C 0.161 3.839 10 H 0.018 0.982 11 C -0.107 4.107 12 H 0.060 0.940 13 C -0.122 4.122 14 C 0.183 3.817 15 N -0.613 5.613 16 C -0.226 4.226 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.971 3.029 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.267 1.267 24 C 0.132 3.868 25 C -0.083 4.083 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.115 4.115 30 C -0.105 4.105 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.017 0.983 44 H 0.004 0.996 45 H 0.244 0.756 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.133 0.867 51 H 0.152 0.848 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 20.417 -6.875 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.176 4.176 4 C 0.310 3.690 5 O -0.458 6.458 6 N -0.334 5.334 7 C -0.015 4.015 8 C -0.166 4.166 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.127 4.127 12 H 0.078 0.922 13 C -0.161 4.161 14 C 0.058 3.942 15 N -0.337 5.337 16 C -0.355 4.355 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.800 3.200 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.083 4.083 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.133 4.133 30 C -0.122 4.122 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.035 0.965 44 H 0.022 0.978 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.151 0.849 51 H 0.170 0.830 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.776 20.497 -6.497 22.864 hybrid contribution 0.720 -1.818 -0.165 1.962 sum -7.056 18.678 -6.662 21.049 Atomic orbital electron populations 1.22273 0.89583 1.04078 1.04993 1.19792 0.98959 0.96310 0.88850 1.21666 1.00664 0.91876 1.03396 1.21032 0.78677 0.81609 0.87701 1.90647 1.41554 1.66426 1.47184 1.48330 1.49949 1.09438 1.25662 1.22283 0.92673 0.93144 0.93440 1.21949 1.01556 0.95265 0.97872 1.20817 0.93775 0.84516 0.95443 0.96428 1.22431 0.97929 0.94357 0.98029 0.92174 1.22591 1.01728 0.94586 0.97193 1.21289 0.92981 0.92698 0.87223 1.44465 1.50337 1.13270 1.25655 1.19360 1.20554 0.94458 1.01110 0.89704 1.25580 0.99883 0.99815 1.00790 1.70166 1.33411 1.22179 1.34619 0.85171 0.78132 0.78066 0.78592 1.21536 1.22502 1.19127 1.21485 0.98147 0.91870 0.87500 1.19484 0.97936 0.96313 0.94578 1.21255 0.97912 0.96640 0.98513 1.21174 1.00483 0.99730 0.93458 1.21401 0.97795 0.97961 0.97018 1.21444 0.96603 0.95458 0.99765 1.21201 1.00220 1.00360 0.90430 0.91083 0.88247 0.90961 0.94039 0.89033 0.91724 0.86502 0.90265 0.91477 0.91471 0.90575 0.90353 0.96501 0.97750 0.94671 0.89861 0.89611 0.88044 0.87600 0.84890 0.83034 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 7.99 71.98 0.58 -1.60 16 2 C -0.04 -0.73 0.59 -53.67 -0.03 -0.76 16 3 C -0.12 -2.22 7.71 71.98 0.55 -1.67 16 4 C 0.52 14.55 5.21 87.66 0.46 15.01 16 5 O -0.58 -20.05 15.34 -3.05 -0.05 -20.10 16 6 N -0.60 -16.57 1.96 -818.04 -1.60 -18.17 16 7 C 0.11 2.69 3.52 86.68 0.30 2.99 16 8 C -0.13 -4.22 5.07 30.43 0.15 -4.07 16 9 C 0.16 6.35 2.57 45.51 0.12 6.46 16 10 H 0.02 0.72 7.92 -2.39 -0.02 0.70 16 11 C -0.11 -3.79 2.86 -9.99 -0.03 -3.82 16 12 H 0.06 2.35 7.89 -2.39 -0.02 2.33 16 13 C -0.12 -4.56 6.54 31.63 0.21 -4.35 16 14 C 0.18 9.14 5.45 86.85 0.47 9.62 16 15 N -0.61 -30.89 3.35 -669.88 -2.24 -33.13 16 16 C -0.23 -12.35 9.88 84.03 0.83 -11.52 16 17 H 0.09 4.40 7.21 -2.91 -0.02 4.38 16 18 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 19 N -0.95 -57.83 10.44 21.65 0.23 -57.60 16 20 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.13 3.93 5.94 85.89 0.51 4.44 16 25 C -0.08 -1.73 2.98 -19.87 -0.06 -1.78 16 26 C -0.12 -3.33 5.68 22.27 0.13 -3.21 16 27 C -0.13 -3.43 9.07 22.27 0.20 -3.23 16 28 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 29 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 30 C -0.10 -1.63 8.68 22.27 0.19 -1.43 16 31 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 32 H 0.10 0.88 6.71 -2.39 -0.02 0.86 16 33 H 0.07 1.09 4.86 -2.39 -0.01 1.07 16 34 H 0.04 0.96 8.02 -2.38 -0.02 0.94 16 35 H 0.09 1.16 7.78 -2.39 -0.02 1.14 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 2.55 3.09 -2.39 -0.01 2.54 16 38 H 0.08 1.78 7.92 -2.39 -0.02 1.76 16 39 H 0.07 2.38 5.04 -2.39 -0.01 2.37 16 40 H 0.07 2.29 7.62 -2.39 -0.02 2.27 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 43 H 0.02 0.95 7.21 -2.39 -0.02 0.93 16 44 H 0.00 0.24 7.77 -2.39 -0.02 0.22 16 45 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.08 2.26 8.08 -2.38 -0.02 2.24 16 47 H 0.09 2.66 7.02 -2.38 -0.02 2.64 16 48 H 0.10 3.23 5.10 -2.91 -0.01 3.22 16 49 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 50 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 51 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 52 H 0.16 1.39 7.02 -2.91 -0.02 1.37 16 Total: -1.00 -70.71 378.53 4.78 -65.94 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.91 Total: 21.67 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.50 Total: -6.26 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.62 Total: -108.90 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.71 4.78 -65.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.306 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds