Wall clock time and date at job start Wed Apr 1 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47078 * 2 1 4 4 C 1.50701 * 109.46724 * 239.99816 * 2 1 3 5 5 O 1.21284 * 119.99140 * 118.90669 * 4 2 1 6 6 N 1.34774 * 120.00405 * 298.90545 * 4 2 1 7 7 C 1.46595 * 119.68488 * 4.25780 * 6 4 2 8 8 C 1.53950 * 110.58356 * 227.81773 * 7 6 4 9 9 C 1.51517 * 107.34998 * 308.95517 * 8 7 6 10 10 H 1.08998 * 109.28843 * 306.28685 * 9 8 7 11 11 C 1.55366 * 107.78587 * 64.85037 * 9 8 7 12 12 H 1.09005 * 111.50470 * 50.38916 * 11 9 8 13 13 C 1.53739 * 100.22219 * 169.06254 * 11 9 8 14 14 C 1.55288 * 101.84414 * 320.90390 * 13 11 9 15 15 N 1.45474 * 117.33707 * 181.88451 * 9 8 7 16 16 C 1.36931 * 126.40732 * 30.64781 * 15 9 8 17 17 H 1.08005 * 119.99820 * 359.97438 * 16 15 9 18 18 C 1.38817 * 120.00114 * 180.02562 * 16 15 9 19 19 N 1.31616 * 119.99708 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47502 * 59.99766 * 20 18 16 22 22 H 1.48501 * 109.46865 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47169 * 299.99591 * 20 18 16 24 24 C 1.47723 * 119.68463 * 183.98883 * 6 4 2 25 25 C 1.50703 * 109.46981 * 120.00622 * 2 1 3 26 26 C 1.38227 * 120.00259 * 128.46754 * 25 2 1 27 27 C 1.38238 * 120.00301 * 179.75969 * 26 25 2 28 28 C 1.38234 * 119.99355 * 0.48811 * 27 26 25 29 29 C 1.38227 * 120.00469 * 359.78470 * 28 27 26 30 30 C 1.38235 * 119.99964 * 359.95946 * 29 28 27 31 31 H 1.09002 * 109.46681 * 293.75228 * 1 2 3 32 32 H 1.08999 * 109.46853 * 173.75975 * 1 2 3 33 33 H 1.08995 * 109.47146 * 53.75378 * 1 2 3 34 34 H 1.09000 * 109.47509 * 55.06199 * 3 2 1 35 35 H 1.09003 * 109.46851 * 175.05590 * 3 2 1 36 36 H 1.08995 * 109.47739 * 295.05659 * 3 2 1 37 37 H 1.08997 * 109.25394 * 348.10891 * 7 6 4 38 38 H 1.09002 * 109.24982 * 107.57568 * 7 6 4 39 39 H 1.09004 * 109.87868 * 68.41377 * 8 7 6 40 40 H 1.08998 * 109.88233 * 189.41547 * 8 7 6 41 41 H 1.09001 * 110.95487 * 79.04568 * 13 11 9 42 42 H 1.09001 * 110.95135 * 202.76528 * 13 11 9 43 43 H 1.09000 * 109.91769 * 141.82654 * 14 13 11 44 44 H 1.09000 * 109.91960 * 263.13866 * 14 13 11 45 45 H 0.96999 * 119.99768 * 180.02562 * 19 18 16 46 46 H 1.08993 * 110.06924 * 247.14953 * 24 6 4 47 47 H 1.08998 * 110.06889 * 8.73445 * 24 6 4 48 48 H 1.08006 * 120.00119 * 359.97438 * 26 25 2 49 49 H 1.07999 * 120.00434 * 180.24689 * 27 26 25 50 50 H 1.08005 * 119.99651 * 179.76506 * 28 27 26 51 51 H 1.08002 * 120.00499 * 179.97438 * 29 28 27 52 52 H 1.08003 * 120.00125 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7131 -0.1153 -2.0388 6 7 1.7250 -2.0070 -1.4327 7 6 0.8255 -2.6938 -0.5009 8 6 1.4159 -4.0519 -0.0803 9 6 1.7964 -4.7910 -1.3471 10 1 0.9333 -4.8349 -2.0113 11 6 2.9340 -3.9911 -2.0398 12 1 3.7396 -3.7578 -1.3435 13 6 3.3719 -5.0078 -3.1066 14 6 3.2808 -6.3475 -2.3266 15 7 2.3430 -6.1311 -1.2001 16 6 2.0464 -7.0254 -0.2064 17 1 1.3436 -6.7577 0.5688 18 6 2.6498 -8.2755 -0.1948 19 7 3.5066 -8.6013 -1.1392 20 14 2.2456 -9.4951 1.1611 21 1 0.7922 -9.7985 1.1370 22 1 3.0157 -10.7466 0.9468 23 1 2.6074 -8.9099 2.4772 24 6 2.2932 -2.7209 -2.5945 25 6 2.0324 -0.7106 1.2304 26 6 2.9648 -1.7240 1.1111 27 6 3.4293 -2.3724 2.2402 28 6 2.9537 -2.0141 3.4877 29 6 2.0170 -1.0045 3.6065 30 6 1.5565 -0.3526 2.4779 31 1 -0.3633 0.4139 0.9407 32 1 -0.3633 -1.0216 -0.1117 33 1 -0.3633 0.6076 -0.8288 34 1 1.6063 1.9812 0.8424 35 1 3.1265 1.4437 0.0886 36 1 1.7509 1.9301 -0.9309 37 1 0.6833 -2.0739 0.3843 38 1 -0.1378 -2.8557 -0.9848 39 1 2.3002 -3.8962 0.5377 40 1 0.6721 -4.6236 0.4746 41 1 2.6867 -5.0029 -3.9543 42 1 4.3941 -4.8151 -3.4324 43 1 2.9010 -7.1327 -2.9803 44 1 4.2638 -6.6220 -1.9440 45 1 3.9280 -9.4750 -1.1313 46 1 1.5026 -2.9750 -3.3005 47 1 3.0468 -2.1023 -3.0816 48 1 3.3331 -2.0069 0.1360 49 1 4.1608 -3.1615 2.1473 50 1 3.3137 -2.5233 4.3695 51 1 1.6451 -0.7249 4.5812 52 1 0.8244 0.4360 2.5708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036885009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:26 Heat of formation + Delta-G solvation = 20.353439 kcal Electronic energy + Delta-G solvation = -32462.919168 eV Core-core repulsion = 28620.836942 eV Total energy + Delta-G solvation = -3842.082226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.46588 -40.25180 -39.49350 -36.90457 -36.25052 -34.45521 -33.05625 -31.82337 -31.32285 -30.67720 -29.81588 -28.06106 -26.80585 -25.86457 -24.15420 -23.77101 -23.41140 -22.12833 -21.84429 -20.98456 -19.88111 -18.75539 -18.09880 -17.41536 -17.02857 -16.90130 -16.27686 -16.14642 -15.86337 -15.64470 -15.54674 -15.07551 -15.02971 -14.75827 -14.54217 -14.31734 -14.07553 -13.94773 -13.65721 -13.40030 -13.27267 -13.14177 -13.08796 -12.96464 -12.88192 -12.78569 -12.65252 -12.53334 -12.11996 -12.06990 -11.97959 -11.93862 -11.76374 -11.65068 -11.57149 -11.46152 -11.00192 -10.69723 -10.63656 -9.76717 -9.65572 -9.54985 -8.86334 -7.82268 -5.16401 0.42384 0.52744 1.45518 1.48190 1.53684 1.54448 1.93797 2.51031 2.87750 3.30385 3.36394 3.48253 3.58684 3.83069 3.83754 3.94744 4.01759 4.09473 4.13351 4.18756 4.20295 4.22748 4.32529 4.37640 4.49378 4.61448 4.62972 4.66095 4.67585 4.77550 4.79126 4.81353 4.87884 4.88645 4.89126 4.93969 5.03275 5.06365 5.13822 5.17402 5.21816 5.25269 5.32456 5.46329 5.53826 5.54483 5.60183 5.64769 5.66439 5.68851 5.76087 6.11671 6.21171 6.36387 7.09509 7.10217 7.80670 8.49616 9.29459 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.004249 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.877262 B = 6587.592752 C = 8015.847346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.036 4.036 3 C -0.118 4.118 4 C 0.521 3.479 5 O -0.579 6.579 6 N -0.602 5.602 7 C 0.107 3.893 8 C -0.126 4.126 9 C 0.161 3.839 10 H 0.019 0.981 11 C -0.107 4.107 12 H 0.060 0.940 13 C -0.122 4.122 14 C 0.183 3.817 15 N -0.614 5.614 16 C -0.227 4.227 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.972 3.028 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.132 3.868 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.115 4.115 30 C -0.104 4.104 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.004 0.996 44 H 0.016 0.984 45 H 0.244 0.756 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.133 0.867 51 H 0.152 0.848 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 20.516 6.820 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.039 4.039 3 C -0.176 4.176 4 C 0.310 3.690 5 O -0.458 6.458 6 N -0.334 5.334 7 C -0.016 4.016 8 C -0.165 4.165 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.127 4.127 12 H 0.078 0.922 13 C -0.161 4.161 14 C 0.058 3.942 15 N -0.338 5.338 16 C -0.356 4.356 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.604 5.604 20 Si 0.800 3.200 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.082 4.082 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.142 4.142 29 C -0.133 4.133 30 C -0.122 4.122 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.022 0.978 44 H 0.035 0.965 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.151 0.849 51 H 0.170 0.830 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.273 20.589 6.453 22.769 hybrid contribution 0.665 -1.810 0.169 1.936 sum -6.608 18.778 6.621 20.980 Atomic orbital electron populations 1.22354 0.89631 1.04332 1.04974 1.19790 0.98960 0.96304 0.88865 1.21651 1.00712 0.91950 1.03261 1.21023 0.78933 0.81533 0.87502 1.90646 1.40729 1.66425 1.48048 1.48321 1.47786 1.10288 1.26988 1.22307 0.92023 0.93164 0.94057 1.21900 1.01534 0.95189 0.97828 1.20833 0.93909 0.84361 0.95460 0.96386 1.22521 0.97946 0.94225 0.98000 0.92162 1.22581 1.01677 0.94537 0.97271 1.21285 0.92607 0.92655 0.87632 1.44469 1.49673 1.11793 1.27855 1.19323 1.20064 0.93642 1.02592 0.89736 1.25581 0.99845 0.99688 1.00929 1.70158 1.33351 1.21095 1.35750 0.85246 0.77511 0.78148 0.79047 1.20265 1.22490 1.20318 1.21594 0.98251 0.91578 0.87635 1.19487 0.97836 0.96308 0.94579 1.21198 0.97976 0.96728 0.98373 1.21181 1.00438 0.99782 0.93471 1.21399 0.97737 0.98042 0.97040 1.21445 0.96565 0.95492 0.99771 1.21207 1.00174 1.00360 0.90457 0.88235 0.90617 0.91107 0.88866 0.93948 0.92015 0.86427 0.90142 0.91739 0.91402 0.90325 0.90588 0.97763 0.96528 0.94669 0.89852 0.89639 0.88227 0.87574 0.84897 0.83034 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 7.94 71.98 0.57 -1.64 16 2 C -0.04 -0.73 0.59 -53.67 -0.03 -0.77 16 3 C -0.12 -2.22 7.68 71.98 0.55 -1.67 16 4 C 0.52 14.55 5.14 87.66 0.45 15.00 16 5 O -0.58 -20.07 15.29 -3.04 -0.05 -20.11 16 6 N -0.60 -16.53 1.98 -817.16 -1.62 -18.15 16 7 C 0.11 2.67 3.54 86.68 0.31 2.97 16 8 C -0.13 -4.15 5.18 30.43 0.16 -3.99 16 9 C 0.16 6.34 2.55 45.51 0.12 6.45 16 10 H 0.02 0.74 7.94 -2.39 -0.02 0.72 16 11 C -0.11 -3.77 2.88 -9.83 -0.03 -3.80 16 12 H 0.06 2.36 7.84 -2.38 -0.02 2.34 16 13 C -0.12 -4.55 6.54 31.63 0.21 -4.34 16 14 C 0.18 9.15 5.45 86.84 0.47 9.63 16 15 N -0.61 -30.94 3.35 -669.88 -2.24 -33.19 16 16 C -0.23 -12.44 9.88 84.04 0.83 -11.61 16 17 H 0.08 4.38 7.21 -2.91 -0.02 4.35 16 18 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 19 N -0.95 -57.83 10.44 21.65 0.23 -57.61 16 20 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.13 3.91 5.97 86.05 0.51 4.43 16 25 C -0.08 -1.71 3.03 -19.87 -0.06 -1.77 16 26 C -0.12 -3.34 5.82 22.27 0.13 -3.21 16 27 C -0.13 -3.45 9.28 22.27 0.21 -3.25 16 28 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 29 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 30 C -0.10 -1.64 8.89 22.27 0.20 -1.44 16 31 H 0.10 0.87 6.72 -2.39 -0.02 0.85 16 32 H 0.08 1.12 4.60 -2.39 -0.01 1.11 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.15 8.07 -2.39 -0.02 1.13 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.22 7.94 -2.39 -0.02 1.21 16 37 H 0.12 2.53 3.09 -2.39 -0.01 2.52 16 38 H 0.08 1.78 7.94 -2.39 -0.02 1.76 16 39 H 0.06 2.30 5.37 -2.38 -0.01 2.29 16 40 H 0.07 2.30 7.62 -2.39 -0.02 2.28 16 41 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 42 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.00 0.23 7.77 -2.39 -0.02 0.21 16 44 H 0.02 0.93 7.21 -2.39 -0.02 0.92 16 45 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 47 H 0.09 2.65 7.02 -2.39 -0.02 2.63 16 48 H 0.10 3.19 5.31 -2.91 -0.02 3.17 16 49 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 50 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 51 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 52 H 0.16 1.40 7.01 -2.91 -0.02 1.38 16 Total: -1.00 -70.85 379.64 4.76 -66.09 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.91 Total: 21.72 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.51 Total: -6.39 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.64 Total: -108.94 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.85 4.76 -66.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.440 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds