Wall clock time and date at job start Wed Apr 1 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46989 * 2 1 4 4 C 1.50697 * 109.46912 * 119.99990 * 2 1 3 5 5 O 1.21281 * 120.00097 * 0.81293 * 4 2 1 6 6 N 1.34777 * 120.00211 * 180.81531 * 4 2 1 7 7 C 1.47025 * 121.03660 * 354.96515 * 6 4 2 8 8 C 1.53043 * 107.74889 * 122.50690 * 7 6 4 9 9 C 1.51146 * 111.06938 * 54.41821 * 8 7 6 10 10 H 1.09000 * 108.45597 * 185.41914 * 9 8 7 11 11 C 1.53989 * 113.17071 * 304.91311 * 9 8 7 12 12 H 1.08997 * 112.71743 * 284.02796 * 11 9 8 13 13 C 1.56025 * 100.38848 * 163.66254 * 11 9 8 14 14 C 1.54500 * 102.62047 * 323.14634 * 13 11 9 15 15 N 1.46464 * 113.23426 * 65.13459 * 9 8 7 16 16 C 1.36941 * 126.05441 * 29.47874 * 15 9 8 17 17 H 1.07998 * 119.99818 * 359.97438 * 16 15 9 18 18 C 1.38814 * 120.00110 * 180.02562 * 16 15 9 19 19 N 1.31620 * 119.99525 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00060 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47204 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47681 * 119.99446 * 20 18 16 23 23 H 1.48506 * 109.47169 * 239.99647 * 20 18 16 24 24 C 1.46522 * 121.01558 * 174.94212 * 6 4 2 25 25 C 1.50702 * 109.47156 * 239.99578 * 2 1 3 26 26 C 1.38233 * 120.00267 * 247.76251 * 25 2 1 27 27 C 1.38237 * 119.99982 * 179.78962 * 26 25 2 28 28 C 1.38232 * 119.99659 * 0.46708 * 27 26 25 29 29 C 1.38232 * 120.00336 * 359.76517 * 28 27 26 30 30 C 1.38231 * 119.99851 * 0.02562 * 29 28 27 31 31 H 1.08994 * 109.46887 * 304.87099 * 1 2 3 32 32 H 1.09005 * 109.46613 * 64.87201 * 1 2 3 33 33 H 1.09000 * 109.47003 * 184.87007 * 1 2 3 34 34 H 1.09002 * 109.46738 * 174.07919 * 3 2 1 35 35 H 1.09001 * 109.47354 * 294.07602 * 3 2 1 36 36 H 1.08994 * 109.47226 * 54.08054 * 3 2 1 37 37 H 1.08993 * 109.75263 * 2.95950 * 7 6 4 38 38 H 1.09008 * 109.82349 * 242.09381 * 7 6 4 39 39 H 1.09004 * 109.14708 * 294.02673 * 8 7 6 40 40 H 1.09000 * 109.15466 * 174.81271 * 8 7 6 41 41 H 1.08994 * 110.77869 * 204.86339 * 13 11 9 42 42 H 1.08997 * 110.93737 * 81.49986 * 13 11 9 43 43 H 1.09003 * 109.89781 * 263.44851 * 14 13 11 44 44 H 1.08989 * 110.05115 * 142.29010 * 14 13 11 45 45 H 0.97008 * 119.99248 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.34870 * 115.40687 * 24 6 4 47 47 H 1.08997 * 109.34880 * 355.85320 * 24 6 4 48 48 H 1.08001 * 119.99745 * 0.02562 * 26 25 2 49 49 H 1.07999 * 119.99771 * 180.25181 * 27 26 25 50 50 H 1.08000 * 119.99654 * 179.78965 * 28 27 26 51 51 H 1.08002 * 119.99880 * 180.02562 * 29 28 27 52 52 H 1.07998 * 120.00050 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2443 -1.1842 2.0213 6 7 3.3573 -0.8192 1.4522 7 6 4.3333 -0.3513 0.4571 8 6 5.2321 0.6845 1.1365 9 6 5.8553 0.1221 2.3935 10 1 6.4057 0.9198 2.8924 11 6 4.8182 -0.4271 3.3905 12 1 4.2960 0.3616 3.9320 13 6 5.7398 -1.2870 4.3100 14 6 6.7612 -1.8739 3.3103 15 7 6.7798 -0.9840 2.1350 16 6 7.5287 -1.1606 1.0022 17 1 7.4657 -0.4445 0.1962 18 6 8.3679 -2.2605 0.8893 19 7 8.4442 -3.1335 1.8715 20 14 9.3899 -2.5010 -0.6556 21 1 9.1251 -1.3881 -1.6025 22 1 10.8312 -2.5153 -0.2986 23 1 9.0254 -3.7912 -1.2944 24 6 3.8694 -1.4072 2.6927 25 6 2.0324 -0.7105 -1.2304 26 6 2.6899 -1.9204 -1.1099 27 6 3.1469 -2.5742 -2.2389 28 6 2.9548 -2.0134 -3.4876 29 6 2.3015 -0.8011 -3.6078 30 6 1.8407 -0.1494 -2.4792 31 1 -0.3633 0.5875 0.8431 32 1 -0.3633 0.4364 -0.9305 33 1 -0.3633 -1.0240 0.0872 34 1 3.1249 1.4442 0.1060 35 1 1.7659 1.9248 -0.9383 36 1 1.5927 1.9859 0.8322 37 1 3.8118 0.1065 -0.3834 38 1 4.9352 -1.1900 0.1069 39 1 4.6368 1.5607 1.3936 40 1 6.0227 0.9794 0.4465 41 1 5.1712 -2.0815 4.7931 42 1 6.2393 -0.6645 5.0524 43 1 6.4541 -2.8763 3.0118 44 1 7.7511 -1.9091 3.7648 45 1 9.0310 -3.9019 1.7927 46 1 4.4065 -2.3271 2.4615 47 1 3.0348 -1.6356 3.3555 48 1 2.8433 -2.3568 -0.1339 49 1 3.6570 -3.5215 -2.1450 50 1 3.3148 -2.5225 -4.3694 51 1 2.1510 -0.3631 -4.5835 52 1 1.3307 0.7979 -2.5730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036885010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:30 Heat of formation + Delta-G solvation = 16.467855 kcal Electronic energy + Delta-G solvation = -32781.673931 eV Core-core repulsion = 28939.423213 eV Total energy + Delta-G solvation = -3842.250718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -42.37052 -40.40201 -39.41833 -36.67588 -36.12740 -34.53767 -33.21013 -31.90349 -31.02852 -30.69162 -29.40590 -27.97633 -27.13036 -26.06437 -24.36114 -24.01341 -23.39059 -22.23476 -21.79324 -20.56348 -19.41036 -18.59986 -18.26528 -17.41840 -17.13173 -16.88708 -16.35086 -16.17823 -15.99492 -15.68895 -15.58775 -14.96123 -14.90411 -14.68512 -14.41716 -14.23606 -14.13321 -13.93993 -13.78766 -13.33744 -13.16473 -13.09616 -12.98207 -12.89448 -12.84443 -12.78094 -12.60580 -12.54478 -12.21762 -12.03350 -11.99145 -11.95253 -11.69768 -11.58870 -11.53222 -11.44545 -11.20139 -10.68934 -10.60039 -9.79745 -9.57807 -9.55919 -8.79510 -7.79203 -5.11584 0.41140 0.50575 1.45484 1.46284 1.55337 1.56454 2.02257 2.51834 2.86279 3.34360 3.40579 3.58007 3.59393 3.80540 3.89018 3.98846 4.05598 4.09962 4.11171 4.17997 4.23459 4.26936 4.31143 4.44390 4.55646 4.58599 4.59275 4.65008 4.74465 4.77345 4.80321 4.82466 4.88208 4.91371 4.94037 4.96966 5.08111 5.11679 5.16127 5.21015 5.23630 5.27804 5.35805 5.41235 5.53061 5.58701 5.59585 5.64300 5.65952 5.68367 5.80352 6.10556 6.24417 6.49096 7.12807 7.15105 7.84822 8.51730 9.32618 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.005223 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.925669 B = 5359.852558 C = 7071.523712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.153 4.153 4 C 0.522 3.478 5 O -0.584 6.584 6 N -0.595 5.595 7 C 0.118 3.882 8 C -0.127 4.127 9 C 0.163 3.837 10 H 0.018 0.982 11 C -0.100 4.100 12 H 0.107 0.893 13 C -0.130 4.130 14 C 0.186 3.814 15 N -0.606 5.606 16 C -0.211 4.211 17 H 0.088 0.912 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.963 3.037 21 H -0.261 1.261 22 H -0.299 1.299 23 H -0.300 1.300 24 C 0.131 3.869 25 C -0.080 4.080 26 C -0.134 4.134 27 C -0.132 4.132 28 C -0.124 4.124 29 C -0.114 4.114 30 C -0.106 4.106 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.008 0.992 44 H 0.004 0.996 45 H 0.241 0.759 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.112 0.888 50 H 0.139 0.861 51 H 0.155 0.845 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 10.938 -8.566 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.038 4.038 3 C -0.210 4.210 4 C 0.312 3.688 5 O -0.465 6.465 6 N -0.325 5.325 7 C -0.003 4.003 8 C -0.166 4.166 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.121 4.121 12 H 0.125 0.875 13 C -0.169 4.169 14 C 0.061 3.939 15 N -0.331 5.331 16 C -0.340 4.340 17 H 0.106 0.894 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.227 1.227 23 H -0.228 1.228 24 C 0.008 3.992 25 C -0.081 4.081 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.142 4.142 29 C -0.132 4.132 30 C -0.123 4.123 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.026 0.974 44 H 0.023 0.977 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.130 0.870 50 H 0.157 0.843 51 H 0.173 0.827 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.415 10.565 -8.243 20.426 hybrid contribution 1.477 -1.435 -0.056 2.060 sum -13.938 9.130 -8.299 18.615 Atomic orbital electron populations 1.21660 0.90303 1.02054 1.03446 1.19796 0.98323 0.96933 0.88790 1.22300 1.02502 0.91272 1.04921 1.20999 0.81328 0.78817 0.87698 1.90626 1.55710 1.50396 1.49783 1.48038 1.05482 1.60018 1.18974 1.22038 0.89872 0.97445 0.90984 1.21635 0.98972 0.98236 0.97709 1.20468 0.89578 0.90074 0.94214 0.96463 1.22710 0.95149 0.97683 0.96512 0.87514 1.23009 0.97074 0.99454 0.97328 1.20947 0.94596 0.92198 0.86199 1.44521 1.47391 1.25136 1.16064 1.19335 1.15357 1.05476 0.93877 0.89416 1.25486 1.02146 0.97953 1.00498 1.70188 1.42573 1.14631 1.33028 0.85216 0.78070 0.77478 0.79959 1.18459 1.22654 1.22768 1.21317 0.96587 0.95465 0.85802 1.19535 0.99096 0.94723 0.94710 1.21198 0.99484 0.96201 0.98315 1.21238 1.00162 1.00296 0.93359 1.21432 0.98985 0.96751 0.96999 1.21487 0.97249 0.94650 0.99765 1.21220 0.99813 1.00892 0.90406 0.91700 0.88887 0.94034 0.91019 0.88147 0.91030 0.86938 0.93272 0.89363 0.91165 0.90704 0.90647 0.97380 0.97730 0.94961 0.93926 0.90433 0.89005 0.86969 0.84331 0.82728 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 7.76 71.98 0.56 -1.89 16 2 C -0.04 -0.83 0.59 -53.67 -0.03 -0.86 16 3 C -0.15 -2.68 7.97 71.98 0.57 -2.10 16 4 C 0.52 16.74 5.11 87.66 0.45 17.19 16 5 O -0.58 -22.55 15.36 -3.03 -0.05 -22.60 16 6 N -0.59 -19.68 2.14 -819.92 -1.76 -21.44 16 7 C 0.12 3.79 3.40 86.29 0.29 4.09 16 8 C -0.13 -3.99 4.83 30.00 0.14 -3.84 16 9 C 0.16 6.15 2.85 44.73 0.13 6.27 16 10 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 11 C -0.10 -3.39 3.86 -9.34 -0.04 -3.43 16 12 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 13 C -0.13 -4.75 6.29 32.15 0.20 -4.54 16 14 C 0.19 9.05 4.64 86.71 0.40 9.45 16 15 N -0.61 -29.01 3.12 -674.37 -2.11 -31.12 16 16 C -0.21 -11.04 9.02 84.03 0.76 -10.29 16 17 H 0.09 4.33 6.69 -2.91 -0.02 4.31 16 18 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 19 N -0.95 -57.15 10.38 21.65 0.22 -56.93 16 20 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 24 C 0.13 4.78 5.44 86.45 0.47 5.25 16 25 C -0.08 -1.90 3.08 -19.87 -0.06 -1.96 16 26 C -0.13 -3.97 6.96 22.27 0.15 -3.82 16 27 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 28 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 29 C -0.11 -1.94 10.05 22.27 0.22 -1.71 16 30 C -0.11 -1.85 8.69 22.27 0.19 -1.65 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.33 7.76 -2.38 -0.02 1.31 16 33 H 0.04 1.05 7.95 -2.39 -0.02 1.03 16 34 H 0.07 1.39 3.73 -2.39 -0.01 1.38 16 35 H 0.10 1.14 6.76 -2.39 -0.02 1.13 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 3.05 3.21 -2.39 -0.01 3.04 16 38 H 0.05 1.99 7.22 -2.38 -0.02 1.97 16 39 H 0.09 2.24 7.19 -2.39 -0.02 2.22 16 40 H 0.07 2.30 7.01 -2.39 -0.02 2.28 16 41 H 0.07 2.52 7.97 -2.39 -0.02 2.51 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.01 0.44 6.99 -2.39 -0.02 0.43 16 44 H 0.00 0.25 7.56 -2.39 -0.02 0.23 16 45 H 0.24 14.27 8.31 -92.70 -0.77 13.50 16 46 H 0.04 1.84 6.80 -2.38 -0.02 1.83 16 47 H 0.08 2.82 7.02 -2.39 -0.02 2.81 16 48 H 0.09 3.30 5.74 -2.91 -0.02 3.29 16 49 H 0.11 3.16 8.06 -2.91 -0.02 3.13 16 50 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 51 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 52 H 0.16 1.67 7.02 -2.91 -0.02 1.65 16 Total: -1.00 -69.61 377.80 4.60 -65.01 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.92 Total: 22.89 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.33 Total: -3.01 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.64 Total: -109.48 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.61 4.60 -65.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.481 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds