Wall clock time and date at job start Wed Apr 1 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47056 * 2 1 4 4 C 1.38256 * 119.99959 * 265.20983 * 3 2 1 5 5 C 1.38217 * 119.99805 * 180.22907 * 4 3 2 6 6 C 1.38258 * 119.99880 * 359.81577 * 5 4 3 7 7 C 1.38210 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99584 * 84.99953 * 3 2 1 9 9 C 1.50694 * 120.00431 * 359.97438 * 8 3 2 10 10 C 1.50700 * 109.46933 * 84.72571 * 9 8 3 11 11 O 1.21281 * 120.00094 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99976 * 180.02562 * 10 9 8 13 13 C 1.46943 * 120.43891 * 359.72325 * 12 10 9 14 14 C 1.54070 * 108.28999 * 125.71539 * 13 12 10 15 15 H 1.09005 * 110.52432 * 172.27862 * 14 13 12 16 16 C 1.53371 * 108.83061 * 294.51956 * 14 13 12 17 17 C 1.53021 * 109.25242 * 60.26615 * 16 14 13 18 18 C 1.53009 * 109.79488 * 60.57811 * 17 16 14 19 19 C 1.53367 * 109.27189 * 299.42801 * 18 17 16 20 20 H 1.08992 * 111.08635 * 177.80524 * 19 18 17 21 21 C 1.46942 * 120.44120 * 180.02562 * 12 10 9 22 22 N 1.47565 * 107.70214 * 51.34664 * 14 13 12 23 23 C 1.36937 * 121.61272 * 120.38767 * 22 14 13 24 24 H 1.08005 * 119.99922 * 207.49198 * 23 22 14 25 25 C 1.38808 * 119.99724 * 27.48649 * 23 22 14 26 26 N 1.31611 * 120.00251 * 18.64764 * 25 23 22 27 27 Si 1.86799 * 119.99942 * 198.64252 * 25 23 22 28 28 H 1.48505 * 109.47253 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47321 * 120.00281 * 27 25 23 30 30 H 1.48505 * 109.47273 * 240.00415 * 27 25 23 31 31 H 1.08995 * 109.47761 * 299.99976 * 1 2 3 32 32 H 1.09008 * 109.47127 * 60.00121 * 1 2 3 33 33 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47292 * 240.00573 * 2 1 3 35 35 H 1.08994 * 109.47005 * 119.99968 * 2 1 3 36 36 H 1.07999 * 120.00491 * 0.07011 * 4 3 2 37 37 H 1.07999 * 120.00033 * 179.82834 * 5 4 3 38 38 H 1.08002 * 120.00168 * 179.97438 * 6 5 4 39 39 H 1.07998 * 120.00063 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47262 * 204.72579 * 9 8 3 41 41 H 1.08997 * 109.46924 * 324.72808 * 9 8 3 42 42 H 1.09000 * 109.62524 * 245.47473 * 13 12 10 43 43 H 1.09005 * 109.62921 * 6.04835 * 13 12 10 44 44 H 1.09000 * 109.50813 * 180.19729 * 16 14 13 45 45 H 1.08995 * 109.50716 * 300.29167 * 16 14 13 46 46 H 1.09000 * 109.41218 * 180.67672 * 17 16 14 47 47 H 1.08998 * 109.41448 * 300.54388 * 17 16 14 48 48 H 1.09001 * 109.50183 * 179.48833 * 18 17 16 49 49 H 1.09000 * 109.50391 * 59.37003 * 18 17 16 50 50 H 1.08997 * 109.62812 * 353.96161 * 21 12 10 51 51 H 1.08995 * 109.62693 * 114.54050 * 21 12 10 52 52 H 0.97000 * 120.00555 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3570 2.0393 -1.1932 5 6 2.8222 3.3408 -1.1927 6 6 2.9592 4.0255 0.0006 7 6 2.6305 3.4088 1.1929 8 6 2.1643 2.1071 1.1925 9 6 1.8053 1.4348 2.4925 10 6 2.9819 0.6319 2.9844 11 8 4.0108 0.6084 2.3427 12 7 2.8908 -0.0600 4.1375 13 6 1.6510 -0.0334 4.9257 14 6 1.1988 -1.4867 5.1648 15 1 0.3593 -1.5163 5.8595 16 6 0.8227 -2.1161 3.8177 17 6 2.0437 -2.1015 2.8956 18 6 3.1776 -2.9140 3.5243 19 6 3.5629 -2.2880 4.8703 20 1 4.3438 -2.8672 5.3630 21 6 4.0323 -0.8456 4.6264 22 7 2.3505 -2.2310 5.7099 23 6 2.2968 -2.8398 6.9353 24 1 3.2017 -2.9829 7.5073 25 6 1.0793 -3.2730 7.4422 26 7 0.0535 -3.4428 6.6355 27 14 0.8971 -3.6151 9.2696 28 1 2.1877 -3.3487 9.9542 29 1 -0.1545 -2.7327 9.8359 30 1 0.5131 -5.0354 9.4714 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2496 1.5046 -2.1253 37 1 3.0785 3.8230 -2.1245 38 1 3.3231 5.0424 0.0010 39 1 2.7379 3.9435 2.1251 40 1 1.5464 2.1913 3.2334 41 1 0.9536 0.7729 2.3361 42 1 1.8351 0.4577 5.8812 43 1 0.8793 0.5060 4.3763 44 1 0.4974 -3.1445 3.9747 45 1 0.0146 -1.5443 3.3618 46 1 1.7760 -2.5374 1.9331 47 1 2.3743 -1.0734 2.7484 48 1 4.0415 -2.9080 2.8595 49 1 2.8460 -3.9403 3.6817 50 1 4.8269 -0.8403 3.8803 51 1 4.3990 -0.4171 5.5591 52 1 -0.7972 -3.7458 6.9896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039673834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:22 Heat of formation + Delta-G solvation = 18.060059 kcal Electronic energy + Delta-G solvation = -32508.251393 eV Core-core repulsion = 28666.069718 eV Total energy + Delta-G solvation = -3842.181675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.23856 -40.45901 -38.98364 -35.56850 -35.20951 -34.58157 -33.74434 -33.09448 -32.12921 -30.36925 -29.25873 -27.89531 -26.94109 -25.38768 -24.66969 -23.37133 -23.02781 -22.62959 -21.47076 -20.65961 -19.93784 -18.63241 -17.78056 -17.36802 -16.93392 -16.79570 -16.39191 -16.20423 -15.89580 -15.59483 -15.21081 -14.84721 -14.74846 -14.63011 -14.48439 -14.30830 -14.13553 -13.90147 -13.78849 -13.62734 -13.39165 -13.08199 -13.04418 -13.01987 -12.81587 -12.61557 -12.60626 -12.41459 -12.16112 -12.05617 -11.87865 -11.73170 -11.67403 -11.56629 -11.50306 -11.20161 -11.05552 -10.79514 -10.41658 -9.63814 -9.43042 -9.41318 -8.44009 -7.80321 -5.24570 0.47925 0.56853 1.47968 1.52878 1.60636 1.65025 2.10217 2.54590 2.92021 3.31648 3.52276 3.67186 3.79355 3.89288 4.04797 4.11379 4.14242 4.16799 4.25204 4.31263 4.34802 4.36770 4.38839 4.49211 4.52588 4.54407 4.66841 4.68847 4.74409 4.75772 4.79577 4.84190 4.87051 4.91936 5.02515 5.07043 5.11658 5.15016 5.19372 5.26930 5.28358 5.37231 5.42100 5.48689 5.56392 5.64479 5.67256 5.69736 5.78306 5.81686 5.89049 6.19574 6.43161 6.53529 7.19079 7.22146 7.85878 8.44959 9.22669 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.003377 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.401573 B = 8288.856317 C = 8553.123241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.076 4.076 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.077 4.077 9 C -0.105 4.105 10 C 0.520 3.480 11 O -0.575 6.575 12 N -0.593 5.593 13 C 0.093 3.907 14 C 0.174 3.826 15 H 0.086 0.914 16 C -0.103 4.103 17 C -0.134 4.134 18 C -0.118 4.118 19 C 0.148 3.852 20 H 0.071 0.929 21 C 0.111 3.889 22 N -0.593 5.593 23 C -0.256 4.256 24 H 0.061 0.939 25 C -0.039 4.039 26 N -0.917 5.917 27 Si 0.957 3.043 28 H -0.274 1.274 29 H -0.289 1.289 30 H -0.299 1.299 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.096 0.904 48 H 0.054 0.946 49 H 0.032 0.968 50 H 0.082 0.918 51 H 0.063 0.937 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 13.380 -12.934 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.151 4.151 7 C -0.137 4.137 8 C -0.077 4.077 9 C -0.144 4.144 10 C 0.311 3.689 11 O -0.455 6.455 12 N -0.325 5.325 13 C -0.031 4.031 14 C 0.067 3.933 15 H 0.104 0.896 16 C -0.142 4.142 17 C -0.171 4.171 18 C -0.157 4.157 19 C 0.041 3.959 20 H 0.089 0.911 21 C -0.014 4.014 22 N -0.315 5.315 23 C -0.386 4.386 24 H 0.079 0.921 25 C -0.235 4.235 26 N -0.562 5.562 27 Si 0.787 3.213 28 H -0.198 1.198 29 H -0.216 1.216 30 H -0.227 1.227 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.100 0.900 51 H 0.081 0.919 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.090 13.296 -13.169 18.746 hybrid contribution -0.175 -1.013 1.272 1.635 sum 0.916 12.283 -11.897 17.125 Atomic orbital electron populations 1.21727 0.93437 1.02263 1.02470 1.20662 0.97170 0.92592 1.02721 1.19880 0.98602 0.95997 0.93138 1.21242 1.00237 0.95840 0.97568 1.21422 0.99084 0.94614 0.98997 1.21366 1.00497 1.00949 0.92275 1.21225 0.98769 0.94472 0.99222 1.19285 1.00662 0.94567 0.93231 1.20866 0.96792 1.00353 0.96407 1.20637 0.89569 0.78786 0.79926 1.90674 1.32759 1.65055 1.57037 1.48202 1.15137 1.46895 1.22279 1.22659 0.85455 0.99424 0.95519 1.21176 0.90885 0.87485 0.93770 0.89586 1.21669 0.96227 1.00285 0.96043 1.22160 0.95694 1.02509 0.96778 1.21842 0.98211 0.98408 0.97266 1.21330 0.90242 0.93505 0.90854 0.91076 1.22002 0.88479 0.92060 0.98825 1.44598 1.10837 1.59270 1.16760 1.19380 0.93819 1.32130 0.93309 0.92109 1.25554 0.97457 0.99548 1.00967 1.70123 1.02420 1.49887 1.33788 0.85368 0.77495 0.76507 0.81918 1.19849 1.21582 1.22701 0.92410 0.91626 0.92006 0.90892 0.92272 0.84837 0.83918 0.84071 0.85251 0.86035 0.86972 0.91632 0.87787 0.94816 0.92353 0.94353 0.88672 0.92719 0.94957 0.89970 0.91891 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.72 71.98 0.70 -2.14 16 2 C -0.09 -2.26 5.38 29.85 0.16 -2.10 16 3 C -0.08 -1.89 5.13 -19.86 -0.10 -1.99 16 4 C -0.13 -2.84 9.68 22.27 0.22 -2.62 16 5 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 6 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 7 C -0.12 -2.71 9.68 22.27 0.22 -2.49 16 8 C -0.08 -1.94 4.37 -19.87 -0.09 -2.03 16 9 C -0.10 -2.58 3.47 29.10 0.10 -2.48 16 10 C 0.52 16.41 4.41 87.66 0.39 16.79 16 11 O -0.57 -21.79 15.43 -3.03 -0.05 -21.84 16 12 N -0.59 -19.46 1.63 -816.24 -1.33 -20.80 16 13 C 0.09 3.03 5.84 86.66 0.51 3.54 16 14 C 0.17 7.20 2.67 45.27 0.12 7.32 16 15 H 0.09 4.14 5.88 -2.38 -0.01 4.13 16 16 C -0.10 -4.06 5.57 30.73 0.17 -3.89 16 17 C -0.13 -4.85 4.72 30.60 0.14 -4.71 16 18 C -0.12 -4.61 5.58 30.72 0.17 -4.44 16 19 C 0.15 5.95 3.63 45.12 0.16 6.12 16 20 H 0.07 2.88 8.01 -2.39 -0.02 2.86 16 21 C 0.11 3.93 5.89 86.51 0.51 4.44 16 22 N -0.59 -27.21 2.53 -644.70 -1.63 -28.84 16 23 C -0.26 -13.20 9.71 84.03 0.82 -12.38 16 24 H 0.06 3.14 7.90 -2.91 -0.02 3.12 16 25 C -0.04 -2.02 4.97 84.86 0.42 -1.59 16 26 N -0.92 -49.65 11.00 21.65 0.24 -49.41 16 27 Si 0.96 42.84 29.59 68.60 2.03 44.87 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 30 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 31 H 0.06 1.13 6.79 -2.39 -0.02 1.12 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 35 H 0.06 1.67 4.40 -2.39 -0.01 1.66 16 36 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.12 2.39 7.82 -2.39 -0.02 2.37 16 41 H 0.11 2.60 5.18 -2.39 -0.01 2.59 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 2.67 5.90 -2.38 -0.01 2.66 16 44 H 0.03 1.59 7.99 -2.39 -0.02 1.57 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.33 7.97 -2.39 -0.02 1.31 16 47 H 0.10 3.24 1.56 -3.50 -0.01 3.23 16 48 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 2.92 6.99 -2.39 -0.02 2.91 16 51 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -62.54 384.02 5.23 -57.31 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.91 Total: 27.95 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.06 Total: -9.23 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -2.73 Total: -99.05 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -62.54 5.23 -57.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039673834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.368 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds