Wall clock time and date at job start Wed Apr 1 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46772 * 2 1 4 4 C 1.38254 * 120.00041 * 90.00371 * 3 2 1 5 5 C 1.38217 * 119.99942 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99807 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00448 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00366 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47007 * 89.99708 * 8 7 6 10 10 O 1.21275 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99950 * 179.97438 * 9 8 7 12 12 C 1.46946 * 120.44312 * 359.97438 * 11 9 8 13 13 C 1.54054 * 108.50764 * 125.66534 * 12 11 9 14 14 H 1.08998 * 110.71885 * 172.22332 * 13 12 11 15 15 C 1.53375 * 108.80787 * 294.57588 * 13 12 11 16 16 C 1.53017 * 109.24449 * 60.02035 * 15 13 12 17 17 C 1.52557 * 109.66708 * 60.81669 * 16 15 13 18 18 C 1.53377 * 109.33466 * 299.16882 * 17 16 15 19 19 H 1.09000 * 111.08466 * 177.90038 * 18 17 16 20 20 C 1.46942 * 120.44512 * 180.02562 * 11 9 8 21 21 N 1.47566 * 107.52118 * 51.28833 * 13 12 11 22 22 C 1.36940 * 121.61309 * 120.52603 * 21 13 12 23 23 H 1.07998 * 120.00370 * 203.62010 * 22 21 13 24 24 C 1.38810 * 119.99850 * 23.60967 * 22 21 13 25 25 N 1.31621 * 119.99838 * 27.99329 * 24 22 21 26 26 Si 1.86800 * 120.00107 * 207.99448 * 24 22 21 27 27 H 1.48498 * 109.47376 * 90.00266 * 26 24 22 28 28 H 1.48502 * 109.47260 * 209.99954 * 26 24 22 29 29 H 1.48500 * 109.47046 * 329.99996 * 26 24 22 30 30 C 1.38212 * 119.99840 * 270.27239 * 3 2 1 31 31 H 1.09003 * 109.47185 * 60.00453 * 1 2 3 32 32 H 1.09001 * 109.46604 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47483 * 300.00090 * 1 2 3 34 34 H 1.09001 * 109.47548 * 240.00297 * 2 1 3 35 35 H 1.08996 * 109.47520 * 119.99656 * 2 1 3 36 36 H 1.08002 * 120.00097 * 359.97438 * 4 3 2 37 37 H 1.07996 * 119.99989 * 179.97438 * 5 4 3 38 38 H 1.07998 * 119.99541 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.46951 * 329.99756 * 8 7 6 40 40 H 1.08997 * 109.47312 * 210.00214 * 8 7 6 41 41 H 1.09007 * 109.62282 * 245.50373 * 12 11 9 42 42 H 1.08999 * 109.62485 * 5.87312 * 12 11 9 43 43 H 1.08996 * 109.51263 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.50859 * 300.04438 * 15 13 12 45 45 H 1.08998 * 109.41652 * 180.68936 * 16 15 13 46 46 H 1.09006 * 109.41385 * 300.55785 * 16 15 13 47 47 H 1.08998 * 109.38243 * 179.26504 * 17 16 15 48 48 H 1.08993 * 109.56516 * 59.18001 * 17 16 15 49 49 H 1.08997 * 109.62663 * 114.53253 * 20 11 9 50 50 H 1.08996 * 109.79194 * 354.04603 * 20 11 9 51 51 H 0.96999 * 120.00406 * 5.74581 * 25 24 22 52 52 H 1.08003 * 120.00187 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7228 3.3760 1.1973 6 6 2.9531 4.0277 -0.0001 7 6 2.7228 3.3762 -1.1970 8 6 2.9732 4.0868 -2.5021 9 6 4.3965 3.8507 -2.9375 10 8 5.1346 3.1719 -2.2555 11 7 4.8488 4.3931 -4.0854 12 6 3.9624 5.2158 -4.9202 13 6 4.6427 6.5767 -5.1622 14 1 4.0814 7.1647 -5.8882 15 6 4.7582 7.3167 -3.8238 16 6 5.5972 6.4800 -2.8556 17 6 6.9964 6.2798 -3.4296 18 6 6.8952 5.5341 -4.7660 19 1 7.8780 5.4080 -5.2201 20 6 6.2346 4.1688 -4.5196 21 7 6.0080 6.3096 -5.6543 22 6 6.4331 6.7642 -6.8741 23 1 7.2483 6.2692 -7.3808 24 6 5.8161 7.8613 -7.4594 25 7 5.2529 8.7802 -6.7039 26 14 5.7850 8.0334 -9.3192 27 1 4.5674 7.3750 -9.8570 28 1 5.7706 9.4732 -9.6829 29 1 6.9921 7.3891 -9.8962 30 6 2.2572 2.0743 -1.1970 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.0824 1.5636 2.1327 37 1 2.9025 3.8852 2.1326 38 1 3.3123 5.0462 -0.0001 39 1 2.8058 5.1559 -2.3717 40 1 2.2924 3.7025 -3.2616 41 1 3.7892 4.7161 -5.8733 42 1 3.0122 5.3659 -4.4077 43 1 5.2390 8.2821 -3.9818 44 1 3.7634 7.4701 -3.4055 45 1 5.6709 6.9978 -1.8992 46 1 5.1205 5.5110 -2.7073 47 1 7.5939 5.6946 -2.7306 48 1 7.4678 7.2496 -3.5888 49 1 6.2399 3.5874 -5.4415 50 1 6.7817 3.6317 -3.7449 51 1 5.3405 8.7353 -5.7389 52 1 2.0726 1.5668 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039695521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:28 Heat of formation + Delta-G solvation = 26.726140 kcal Electronic energy + Delta-G solvation = -31496.037985 eV Core-core repulsion = 27654.232100 eV Total energy + Delta-G solvation = -3841.805885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.87915 -39.48356 -37.80964 -34.56241 -34.18001 -33.10981 -32.55788 -31.87433 -30.25418 -29.62015 -28.08826 -26.32243 -25.65296 -24.07425 -23.57683 -22.24010 -21.52851 -21.41047 -20.63736 -19.31615 -18.59453 -17.33263 -16.59332 -16.45535 -15.78357 -15.58555 -15.03928 -14.92724 -14.48133 -14.11059 -14.04879 -13.82836 -13.69704 -13.45967 -13.34480 -13.18973 -12.99368 -12.85364 -12.60251 -12.32122 -12.22248 -12.10483 -11.93903 -11.85147 -11.65290 -11.39169 -11.09514 -10.95396 -10.85717 -10.76451 -10.62520 -10.32658 -10.30477 -10.20273 -9.98075 -9.68508 -9.56742 -9.24361 -8.78309 -8.60149 -8.50651 -7.98662 -6.86627 -6.14305 -3.26342 1.32501 1.39434 2.87919 3.31992 3.47648 3.48278 3.65413 3.79609 4.51240 4.56041 4.61768 4.78254 4.85832 4.97200 5.01540 5.07327 5.15043 5.20877 5.27586 5.33996 5.42821 5.49973 5.54323 5.56672 5.58202 5.63406 5.64952 5.68984 5.70444 5.73147 5.85136 5.93465 6.02108 6.04777 6.07683 6.14148 6.22874 6.24406 6.33358 6.41783 6.45206 6.51081 6.54592 6.60814 6.66563 6.78594 6.83294 6.93937 7.00135 7.07497 7.13991 7.79142 7.88573 8.46836 8.48554 9.00816 9.74544 10.21259 11.14726 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.002806 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.448873 B = 9976.698081 C =10276.985992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.109 4.109 7 C -0.054 4.054 8 C -0.107 4.107 9 C 0.517 3.483 10 O -0.546 6.546 11 N -0.592 5.592 12 C 0.091 3.909 13 C 0.155 3.845 14 H 0.110 0.890 15 C -0.125 4.125 16 C -0.138 4.138 17 C -0.123 4.123 18 C 0.154 3.846 19 H 0.078 0.922 20 C 0.103 3.897 21 N -0.586 5.586 22 C -0.345 4.345 23 H 0.061 0.939 24 C -0.024 4.024 25 N -0.916 5.916 26 Si 1.063 2.937 27 H -0.293 1.293 28 H -0.291 1.291 29 H -0.293 1.293 30 C -0.103 4.103 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.082 0.918 51 H 0.274 0.726 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -11.996 12.206 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.127 4.127 7 C -0.054 4.054 8 C -0.147 4.147 9 C 0.306 3.694 10 O -0.424 6.424 11 N -0.325 5.325 12 C -0.034 4.034 13 C 0.047 3.953 14 H 0.127 0.873 15 C -0.165 4.165 16 C -0.176 4.176 17 C -0.163 4.163 18 C 0.046 3.954 19 H 0.096 0.904 20 C -0.021 4.021 21 N -0.308 5.308 22 C -0.474 4.474 23 H 0.079 0.921 24 C -0.226 4.226 25 N -0.558 5.558 26 Si 0.893 3.107 27 H -0.221 1.221 28 H -0.217 1.217 29 H -0.220 1.220 30 C -0.121 4.121 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.086 0.914 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.828 -11.421 11.224 18.285 hybrid contribution 0.763 -0.652 1.195 1.561 sum -8.065 -12.074 12.419 19.106 Atomic orbital electron populations 1.21746 0.94813 1.01543 1.02209 1.20528 0.96050 0.92819 1.02780 1.19799 0.99427 0.96029 0.93103 1.20948 1.00786 0.95018 0.97270 1.21050 0.99657 0.94956 0.97790 1.20978 0.99624 1.00091 0.91990 1.19292 0.98195 0.94261 0.93701 1.20791 0.95361 1.02548 0.95960 1.20129 0.89198 0.79196 0.80862 1.90690 1.58184 1.39726 1.53786 1.48153 1.13034 1.49523 1.21759 1.22600 0.92275 0.94162 0.94327 1.21392 0.87572 0.91883 0.94464 0.87279 1.22021 0.98177 0.99683 0.96583 1.22021 0.96986 1.01630 0.96947 1.21847 0.96592 1.00418 0.97405 1.21234 0.94021 0.89798 0.90309 0.90364 1.22195 0.81652 0.98975 0.99311 1.44535 1.06637 1.62745 1.16895 1.20017 1.21312 1.11778 0.94260 0.92132 1.25721 0.99609 0.90971 1.06291 1.70777 1.46842 1.30663 1.07512 0.83535 0.75928 0.75698 0.75511 1.22073 1.21718 1.21965 1.20819 0.99832 0.93956 0.97521 0.92510 0.92533 0.92626 0.91092 0.91173 0.86481 0.86222 0.86302 0.87899 0.88165 0.91392 0.90905 0.91674 0.93660 0.94735 0.89855 0.93628 0.92589 0.91992 0.89975 0.91389 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.08 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 5 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 6 C -0.11 -1.40 9.70 -39.58 -0.38 -1.78 16 7 C -0.05 -0.72 4.37 -104.62 -0.46 -1.18 16 8 C -0.11 -1.39 4.14 -29.04 -0.12 -1.51 16 9 C 0.52 8.54 5.01 -10.99 -0.06 8.48 16 10 O -0.55 -10.67 15.43 5.56 0.09 -10.58 16 11 N -0.59 -10.10 1.65 -171.92 -0.28 -10.39 16 12 C 0.09 1.54 5.82 -3.25 -0.02 1.52 16 13 C 0.15 3.21 2.49 -66.60 -0.17 3.04 16 14 H 0.11 2.60 5.90 -51.93 -0.31 2.29 16 15 C -0.13 -2.42 5.33 -26.53 -0.14 -2.56 16 16 C -0.14 -2.53 5.54 -26.95 -0.15 -2.67 16 17 C -0.12 -2.38 5.56 -26.76 -0.15 -2.53 16 18 C 0.15 3.11 3.63 -66.81 -0.24 2.87 16 19 H 0.08 1.59 8.01 -51.93 -0.42 1.18 16 20 C 0.10 1.87 5.89 -3.46 -0.02 1.85 16 21 N -0.59 -13.44 2.43 -155.12 -0.38 -13.82 16 22 C -0.35 -9.00 9.62 -15.06 -0.14 -9.14 16 23 H 0.06 1.61 7.97 -52.49 -0.42 1.19 16 24 C -0.02 -0.64 4.75 -17.43 -0.08 -0.72 16 25 N -0.92 -25.68 12.20 55.49 0.68 -25.00 16 26 Si 1.06 24.14 30.00 -169.99 -5.10 19.04 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 30 C -0.10 -1.29 9.36 -39.58 -0.37 -1.66 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.10 1.24 7.63 -51.93 -0.40 0.84 16 40 H 0.10 1.11 7.86 -51.93 -0.41 0.70 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.01 5.90 -51.93 -0.31 0.71 16 43 H 0.06 1.44 6.51 -51.93 -0.34 1.10 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.48 2.48 -52.50 -0.13 1.35 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.08 1.50 7.00 -51.93 -0.36 1.13 16 51 H 0.27 7.57 5.12 -40.82 -0.21 7.37 16 52 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -30.29 391.13 -11.15 -41.44 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.42 Total: 5.97 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.62 Total: -12.56 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.02 Total: -49.21 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.10 Total: 19.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.29 -11.15 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039695521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.169 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds