Wall clock time and date at job start Wed Apr 1 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46772 * 2 1 4 4 C 1.38254 * 120.00041 * 90.00371 * 3 2 1 5 5 C 1.38217 * 119.99942 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99807 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00448 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00366 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47007 * 89.99708 * 8 7 6 10 10 O 1.21275 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99950 * 179.97438 * 9 8 7 12 12 C 1.46946 * 120.44312 * 359.97438 * 11 9 8 13 13 C 1.54054 * 108.50764 * 125.66534 * 12 11 9 14 14 H 1.08998 * 110.71885 * 172.22332 * 13 12 11 15 15 C 1.53375 * 108.80787 * 294.57588 * 13 12 11 16 16 C 1.53017 * 109.24449 * 60.02035 * 15 13 12 17 17 C 1.52557 * 109.66708 * 60.81669 * 16 15 13 18 18 C 1.53377 * 109.33466 * 299.16882 * 17 16 15 19 19 H 1.09000 * 111.08466 * 177.90038 * 18 17 16 20 20 C 1.46942 * 120.44512 * 180.02562 * 11 9 8 21 21 N 1.47566 * 107.52118 * 51.28833 * 13 12 11 22 22 C 1.36940 * 121.61309 * 120.52603 * 21 13 12 23 23 H 1.07998 * 120.00370 * 203.62010 * 22 21 13 24 24 C 1.38810 * 119.99850 * 23.60967 * 22 21 13 25 25 N 1.31621 * 119.99838 * 27.99329 * 24 22 21 26 26 Si 1.86800 * 120.00107 * 207.99448 * 24 22 21 27 27 H 1.48498 * 109.47376 * 90.00266 * 26 24 22 28 28 H 1.48502 * 109.47260 * 209.99954 * 26 24 22 29 29 H 1.48500 * 109.47046 * 329.99996 * 26 24 22 30 30 C 1.38212 * 119.99840 * 270.27239 * 3 2 1 31 31 H 1.09003 * 109.47185 * 60.00453 * 1 2 3 32 32 H 1.09001 * 109.46604 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47483 * 300.00090 * 1 2 3 34 34 H 1.09001 * 109.47548 * 240.00297 * 2 1 3 35 35 H 1.08996 * 109.47520 * 119.99656 * 2 1 3 36 36 H 1.08002 * 120.00097 * 359.97438 * 4 3 2 37 37 H 1.07996 * 119.99989 * 179.97438 * 5 4 3 38 38 H 1.07998 * 119.99541 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.46951 * 329.99756 * 8 7 6 40 40 H 1.08997 * 109.47312 * 210.00214 * 8 7 6 41 41 H 1.09007 * 109.62282 * 245.50373 * 12 11 9 42 42 H 1.08999 * 109.62485 * 5.87312 * 12 11 9 43 43 H 1.08996 * 109.51263 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.50859 * 300.04438 * 15 13 12 45 45 H 1.08998 * 109.41652 * 180.68936 * 16 15 13 46 46 H 1.09006 * 109.41385 * 300.55785 * 16 15 13 47 47 H 1.08998 * 109.38243 * 179.26504 * 17 16 15 48 48 H 1.08993 * 109.56516 * 59.18001 * 17 16 15 49 49 H 1.08997 * 109.62663 * 114.53253 * 20 11 9 50 50 H 1.08996 * 109.79194 * 354.04603 * 20 11 9 51 51 H 0.96999 * 120.00406 * 5.74581 * 25 24 22 52 52 H 1.08003 * 120.00187 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7228 3.3760 1.1973 6 6 2.9531 4.0277 -0.0001 7 6 2.7228 3.3762 -1.1970 8 6 2.9732 4.0868 -2.5021 9 6 4.3965 3.8507 -2.9375 10 8 5.1346 3.1719 -2.2555 11 7 4.8488 4.3931 -4.0854 12 6 3.9624 5.2158 -4.9202 13 6 4.6427 6.5767 -5.1622 14 1 4.0814 7.1647 -5.8882 15 6 4.7582 7.3167 -3.8238 16 6 5.5972 6.4800 -2.8556 17 6 6.9964 6.2798 -3.4296 18 6 6.8952 5.5341 -4.7660 19 1 7.8780 5.4080 -5.2201 20 6 6.2346 4.1688 -4.5196 21 7 6.0080 6.3096 -5.6543 22 6 6.4331 6.7642 -6.8741 23 1 7.2483 6.2692 -7.3808 24 6 5.8161 7.8613 -7.4594 25 7 5.2529 8.7802 -6.7039 26 14 5.7850 8.0334 -9.3192 27 1 4.5674 7.3750 -9.8570 28 1 5.7706 9.4732 -9.6829 29 1 6.9921 7.3891 -9.8962 30 6 2.2572 2.0743 -1.1970 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.0824 1.5636 2.1327 37 1 2.9025 3.8852 2.1326 38 1 3.3123 5.0462 -0.0001 39 1 2.8058 5.1559 -2.3717 40 1 2.2924 3.7025 -3.2616 41 1 3.7892 4.7161 -5.8733 42 1 3.0122 5.3659 -4.4077 43 1 5.2390 8.2821 -3.9818 44 1 3.7634 7.4701 -3.4055 45 1 5.6709 6.9978 -1.8992 46 1 5.1205 5.5110 -2.7073 47 1 7.5939 5.6946 -2.7306 48 1 7.4678 7.2496 -3.5888 49 1 6.2399 3.5874 -5.4415 50 1 6.7817 3.6317 -3.7449 51 1 5.3405 8.7353 -5.7389 52 1 2.0726 1.5668 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039695521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:27 Heat of formation + Delta-G solvation = 13.961934 kcal Electronic energy + Delta-G solvation = -31496.591483 eV Core-core repulsion = 27654.232100 eV Total energy + Delta-G solvation = -3842.359383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.29059 -40.45337 -39.22088 -35.83948 -35.37030 -34.69928 -33.86378 -33.10087 -32.04160 -30.41472 -29.27905 -27.82368 -27.11206 -25.32282 -24.78058 -23.41419 -23.08983 -22.74065 -21.67608 -20.66099 -20.23225 -18.80565 -17.97581 -17.46404 -16.90681 -16.80761 -16.30994 -16.19623 -15.92578 -15.68985 -15.49223 -15.07590 -14.78620 -14.63525 -14.54734 -14.44918 -14.21118 -14.03088 -13.96278 -13.79456 -13.62782 -13.30143 -13.03069 -12.85861 -12.68507 -12.59276 -12.52453 -12.36424 -12.10064 -11.96169 -11.93448 -11.87726 -11.71834 -11.65712 -11.61766 -11.31528 -11.12370 -10.81330 -10.42388 -9.66790 -9.58207 -9.47971 -8.68816 -8.17923 -5.28712 0.43543 0.52593 1.57769 1.62474 1.67813 1.85292 2.00703 2.67641 2.86872 3.21376 3.38814 3.61874 3.70938 3.83372 3.99020 4.00164 4.02351 4.08265 4.10197 4.23502 4.24532 4.27101 4.35628 4.36705 4.50039 4.53212 4.57208 4.59231 4.61545 4.68885 4.70803 4.73650 4.77141 4.79939 4.88154 4.94561 5.03088 5.09854 5.10317 5.17921 5.20709 5.23587 5.28195 5.33438 5.40189 5.49434 5.57957 5.59787 5.68768 5.74439 5.86874 6.15349 6.43637 6.49199 7.07933 7.14301 7.80064 8.28091 9.08340 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.002806 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.448873 B = 9976.698081 C =10276.985992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.102 4.102 9 C 0.519 3.481 10 O -0.575 6.575 11 N -0.592 5.592 12 C 0.101 3.899 13 C 0.151 3.849 14 H 0.078 0.922 15 C -0.117 4.117 16 C -0.132 4.132 17 C -0.119 4.119 18 C 0.149 3.851 19 H 0.068 0.932 20 C 0.113 3.887 21 N -0.602 5.602 22 C -0.349 4.349 23 H 0.048 0.952 24 C -0.069 4.069 25 N -0.943 5.943 26 Si 1.110 2.890 27 H -0.282 1.282 28 H -0.299 1.299 29 H -0.281 1.281 30 C -0.119 4.119 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.266 0.734 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 -13.663 13.374 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.071 4.071 8 C -0.141 4.141 9 C 0.311 3.689 10 O -0.455 6.455 11 N -0.325 5.325 12 C -0.022 4.022 13 C 0.044 3.956 14 H 0.096 0.904 15 C -0.156 4.156 16 C -0.170 4.170 17 C -0.159 4.159 18 C 0.042 3.958 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.324 5.324 22 C -0.478 4.478 23 H 0.066 0.934 24 C -0.267 4.267 25 N -0.586 5.586 26 Si 0.936 3.064 27 H -0.209 1.209 28 H -0.226 1.226 29 H -0.207 1.207 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.079 0.921 50 H 0.102 0.898 51 H 0.077 0.923 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.505 -13.114 12.412 20.890 hybrid contribution 1.340 -0.180 0.917 1.634 sum -9.165 -13.294 13.330 20.938 Atomic orbital electron populations 1.21718 0.93810 1.02415 1.02011 1.20576 0.96852 0.91415 1.03284 1.20136 0.98795 0.97136 0.92920 1.21280 1.00065 0.94987 0.98176 1.21355 0.99155 0.95360 0.98248 1.21174 1.00348 1.00544 0.92542 1.19394 0.99126 0.94780 0.93823 1.20830 0.92958 1.03631 0.96678 1.20727 0.90373 0.78075 0.79773 1.90680 1.59397 1.40940 1.54448 1.48164 1.12467 1.49723 1.22156 1.22466 0.93151 0.91625 0.95007 1.21381 0.86395 0.93710 0.94098 0.90441 1.21911 0.99528 0.97846 0.96355 1.22005 0.96002 1.02105 0.96916 1.21783 0.97564 0.99175 0.97344 1.21322 0.93553 0.90720 0.90186 0.91423 1.21948 0.82545 0.97298 0.99394 1.44702 1.08130 1.62902 1.16714 1.20169 1.20862 1.11234 0.95547 0.93370 1.26819 0.99736 0.90836 1.09260 1.70852 1.48653 1.31855 1.07264 0.82893 0.76712 0.75148 0.71638 1.20855 1.22618 1.20717 1.21025 1.00297 0.94013 0.98372 0.93037 0.91148 0.92490 0.91161 0.90122 0.84283 0.84325 0.86057 0.86467 0.85807 0.91591 0.87064 0.95174 0.90834 0.93659 0.88668 0.92244 0.94994 0.92092 0.89754 0.92271 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.08 -1.28 6.06 29.85 0.18 -1.10 16 3 C -0.09 -1.84 5.13 -19.86 -0.10 -1.94 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 5 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 6 C -0.13 -3.04 9.70 22.27 0.22 -2.83 16 7 C -0.07 -1.73 4.37 -19.87 -0.09 -1.82 16 8 C -0.10 -2.35 4.14 29.10 0.12 -2.23 16 9 C 0.52 15.97 5.01 87.66 0.44 16.41 16 10 O -0.57 -21.48 15.43 -3.02 -0.05 -21.53 16 11 N -0.59 -19.16 1.65 -816.24 -1.34 -20.50 16 12 C 0.10 3.25 5.82 86.65 0.50 3.75 16 13 C 0.15 6.24 2.49 45.27 0.11 6.35 16 14 H 0.08 3.74 5.90 -2.39 -0.01 3.73 16 15 C -0.12 -4.46 5.33 30.73 0.16 -4.30 16 16 C -0.13 -4.70 5.54 30.45 0.17 -4.53 16 17 C -0.12 -4.61 5.56 30.57 0.17 -4.44 16 18 C 0.15 6.08 3.63 45.13 0.16 6.24 16 19 H 0.07 2.83 8.01 -2.39 -0.02 2.81 16 20 C 0.11 4.02 5.89 86.52 0.51 4.53 16 21 N -0.60 -28.00 2.43 -644.68 -1.56 -29.56 16 22 C -0.35 -18.57 9.62 84.03 0.81 -17.76 16 23 H 0.05 2.63 7.97 -2.91 -0.02 2.60 16 24 C -0.07 -3.75 4.75 84.86 0.40 -3.34 16 25 N -0.94 -54.15 12.20 21.65 0.26 -53.89 16 26 Si 1.11 49.35 30.00 68.60 2.06 51.41 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 29 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 30 C -0.12 -2.75 9.36 22.27 0.21 -2.54 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.12 2.39 7.63 -2.39 -0.02 2.37 16 40 H 0.12 2.28 7.86 -2.39 -0.02 2.26 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.11 2.71 5.90 -2.39 -0.01 2.70 16 43 H 0.03 1.35 6.51 -2.39 -0.02 1.33 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.10 3.19 2.48 -3.52 -0.01 3.18 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.08 2.99 7.00 -2.39 -0.02 2.98 16 51 H 0.27 15.23 5.12 -92.71 -0.47 14.75 16 52 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -66.45 391.13 5.69 -60.76 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 1.19 Total: 28.53 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 5.13 Total: -15.22 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -2.64 Total: -103.95 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.06 Total: 51.41 kcal Total: -66.45 5.69 -60.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039695521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.721 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds