Wall clock time and date at job start Wed Apr 1 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 119.99960 * 2 1 4 4 C 1.38234 * 120.00038 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00048 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00387 * 359.95504 * 4 3 2 7 7 C 1.38240 * 119.99634 * 0.02846 * 6 4 3 8 8 C 1.50703 * 119.99964 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47517 * 89.99395 * 8 7 6 10 10 O 1.21284 * 119.99644 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00290 * 179.97438 * 9 8 7 12 12 C 1.46951 * 120.44203 * 359.72373 * 11 9 8 13 13 C 1.54069 * 108.29146 * 125.70841 * 12 11 9 14 14 H 1.09001 * 110.52506 * 172.27729 * 13 12 11 15 15 C 1.53361 * 108.83487 * 294.52864 * 13 12 11 16 16 C 1.53012 * 109.25602 * 60.26489 * 15 13 12 17 17 C 1.53005 * 109.79991 * 60.58108 * 16 15 13 18 18 C 1.53378 * 109.26617 * 299.43133 * 17 16 15 19 19 H 1.09001 * 111.08073 * 177.80338 * 18 17 16 20 20 C 1.46949 * 120.44818 * 179.97438 * 11 9 8 21 21 N 1.47567 * 107.98378 * 56.34910 * 18 17 16 22 22 C 1.36940 * 121.60610 * 122.25236 * 21 18 17 23 23 H 1.07997 * 120.00377 * 27.51759 * 22 21 18 24 24 C 1.38815 * 119.99603 * 207.51447 * 22 21 18 25 25 N 1.31611 * 120.00466 * 18.63439 * 24 22 21 26 26 Si 1.86805 * 119.99704 * 198.63892 * 24 22 21 27 27 H 1.48500 * 109.47270 * 89.99852 * 26 24 22 28 28 H 1.48501 * 109.46930 * 210.00025 * 26 24 22 29 29 H 1.48503 * 109.47228 * 329.99675 * 26 24 22 30 30 C 1.38234 * 120.00302 * 180.23246 * 2 1 3 31 31 H 1.08997 * 109.47361 * 89.99809 * 1 2 3 32 32 H 1.08998 * 109.47167 * 210.00070 * 1 2 3 33 33 H 1.09000 * 109.47182 * 329.99721 * 1 2 3 34 34 H 1.08001 * 120.00047 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.47236 * 269.97774 * 5 4 3 36 36 H 1.09005 * 109.47207 * 29.97610 * 5 4 3 37 37 H 1.09004 * 109.47132 * 149.97649 * 5 4 3 38 38 H 1.08001 * 120.00684 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.46588 * 209.99620 * 8 7 6 40 40 H 1.08997 * 109.46755 * 329.99030 * 8 7 6 41 41 H 1.08992 * 109.62660 * 245.47405 * 12 11 9 42 42 H 1.08997 * 109.62371 * 6.04550 * 12 11 9 43 43 H 1.09006 * 109.51103 * 180.19726 * 15 13 12 44 44 H 1.08999 * 109.50997 * 300.28553 * 15 13 12 45 45 H 1.09009 * 109.41698 * 180.68198 * 16 15 13 46 46 H 1.09002 * 109.42024 * 300.47876 * 16 15 13 47 47 H 1.08992 * 109.50870 * 179.49218 * 17 16 15 48 48 H 1.09000 * 109.50288 * 59.36327 * 17 16 15 49 49 H 1.09008 * 109.62152 * 353.96468 * 20 11 9 50 50 H 1.08997 * 109.62522 * 114.34251 * 20 11 9 51 51 H 0.96995 * 120.00444 * 180.02562 * 25 24 22 52 52 H 1.07996 * 119.99659 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0001 7 6 3.5806 -1.1971 0.0002 8 6 4.3341 -2.5022 0.0001 9 6 4.5859 -2.9371 1.4208 10 8 4.1919 -2.2546 2.3427 11 7 5.2481 -4.0848 1.6669 12 6 5.7236 -4.9227 0.5573 13 6 7.2338 -5.1631 0.7455 14 1 7.5983 -5.8906 0.0203 15 6 7.9697 -3.8252 0.6025 16 6 7.4651 -2.8548 1.6726 17 6 7.7422 -3.4279 3.0640 18 6 7.0057 -4.7645 3.2167 19 1 7.2142 -5.2186 4.1855 20 6 5.4996 -4.5179 3.0484 21 7 7.4418 -5.6527 2.1220 22 6 8.0126 -6.8723 2.3715 23 1 7.7717 -7.4057 3.2790 24 6 8.9007 -7.4228 1.4576 25 7 9.4778 -6.6562 0.5569 26 14 9.2767 -9.2520 1.5063 27 1 8.3175 -9.9779 0.6355 28 1 10.6606 -9.4859 1.0212 29 1 9.1509 -9.7463 2.9010 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6581 2.1325 0.0004 35 1 4.5156 2.8165 -1.0289 36 1 3.7449 3.2622 0.5124 37 1 5.2865 2.3722 0.5128 38 1 5.3517 0.0001 -0.0010 39 1 3.7447 -3.2618 -0.5135 40 1 5.2862 -2.3718 -0.5142 41 1 5.1945 -5.8755 0.5652 42 1 5.5481 -4.4111 -0.3890 43 1 9.0406 -3.9833 0.7305 44 1 7.7789 -3.4087 -0.3865 45 1 7.9779 -1.8989 1.5657 46 1 6.3925 -2.7052 1.5494 47 1 7.3893 -2.7291 3.8223 48 1 8.8137 -3.5869 3.1853 49 1 5.1764 -3.7401 3.7404 50 1 4.9505 -5.4378 3.2493 51 1 10.0981 -7.0409 -0.0819 52 1 1.6582 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039887526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:39 Heat of formation + Delta-G solvation = 25.461508 kcal Electronic energy + Delta-G solvation = -31562.064857 eV Core-core repulsion = 27720.204134 eV Total energy + Delta-G solvation = -3841.860724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.73348 -39.47057 -37.61932 -33.93975 -33.54567 -33.53861 -32.77545 -31.84022 -30.34171 -28.67122 -27.25670 -26.70519 -26.38601 -25.44959 -23.63616 -21.75817 -21.40004 -20.78314 -20.72452 -19.14972 -18.25201 -17.14943 -16.32562 -16.20711 -15.76409 -15.46747 -14.81278 -14.69829 -14.23507 -14.06581 -14.03594 -13.56813 -13.35601 -13.31397 -13.15392 -12.99111 -12.93767 -12.81441 -12.62551 -12.45411 -12.28915 -12.04997 -11.82644 -11.66566 -11.47609 -11.39281 -11.21765 -10.99920 -10.96424 -10.87245 -10.73301 -10.29775 -10.13456 -10.09181 -10.01547 -9.63366 -9.38690 -9.30530 -8.56092 -8.52364 -8.50217 -7.86067 -6.64894 -5.86677 -3.29141 1.38275 1.42007 2.98375 3.32844 3.39694 3.41178 3.42949 3.82928 4.41922 4.65247 4.73771 4.75927 4.96705 5.13292 5.17008 5.24541 5.27052 5.28615 5.30423 5.45543 5.52256 5.54743 5.58013 5.58907 5.72843 5.73189 5.75284 5.78905 5.79921 5.86027 5.93233 6.00696 6.14505 6.17305 6.19208 6.27542 6.38464 6.45603 6.48433 6.55417 6.57087 6.61378 6.67861 6.72416 6.86061 7.00492 7.06057 7.07223 7.12420 7.44825 7.53423 7.71507 7.92609 8.32797 8.57805 9.09774 9.71795 10.33848 11.20032 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002896 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.719772 B = 9665.555665 C = 9959.419469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.049 4.049 8 C -0.107 4.107 9 C 0.517 3.483 10 O -0.548 6.548 11 N -0.591 5.591 12 C 0.083 3.917 13 C 0.177 3.823 14 H 0.116 0.884 15 C -0.114 4.114 16 C -0.139 4.139 17 C -0.120 4.120 18 C 0.152 3.848 19 H 0.077 0.923 20 C 0.102 3.898 21 N -0.579 5.579 22 C -0.249 4.249 23 H 0.068 0.932 24 C 0.004 3.996 25 N -0.896 5.896 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C -0.112 4.112 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.060 0.940 51 H 0.254 0.746 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 12.498 -4.207 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.127 4.127 7 C -0.049 4.049 8 C -0.146 4.146 9 C 0.306 3.694 10 O -0.427 6.427 11 N -0.324 5.324 12 C -0.041 4.041 13 C 0.070 3.930 14 H 0.134 0.866 15 C -0.153 4.153 16 C -0.177 4.177 17 C -0.159 4.159 18 C 0.044 3.956 19 H 0.095 0.905 20 C -0.022 4.022 21 N -0.300 5.300 22 C -0.379 4.379 23 H 0.085 0.915 24 C -0.195 4.195 25 N -0.541 5.541 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.205 1.205 30 C -0.130 4.130 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.611 12.747 -3.816 18.333 hybrid contribution 0.513 -1.056 -0.065 1.176 sum -12.098 11.692 -3.880 17.266 Atomic orbital electron populations 1.20758 0.91407 1.02658 1.02014 1.19800 0.95807 0.93065 0.99867 1.20814 0.93469 0.97277 1.02776 1.19817 0.93778 0.95132 0.99647 1.20772 1.00017 0.94072 1.02077 1.20852 0.99614 0.91420 1.00832 1.19285 0.93416 0.93670 0.98525 1.20787 1.02170 0.95811 0.95857 1.20096 0.77443 0.80975 0.90857 1.90685 1.51974 1.53886 1.46124 1.48173 1.54285 1.21660 1.08255 1.22811 0.99787 0.93874 0.87671 1.21225 0.87651 0.94882 0.89241 0.86638 1.21822 1.02301 0.95798 0.95341 1.22123 1.02552 0.97036 0.96025 1.21884 1.00617 0.97119 0.96315 1.21223 0.90416 0.90657 0.93268 0.90518 1.22192 0.98607 0.99187 0.82192 1.44418 1.69942 1.16418 0.99209 1.19166 1.19138 0.92949 1.06611 0.91477 1.24997 0.96216 0.98218 1.00035 1.69979 1.29578 1.33334 1.21163 0.86299 0.77152 0.85563 0.77793 1.21487 1.21859 1.20526 1.20804 0.93383 0.97464 1.01313 0.91392 0.91620 0.91746 0.86509 0.91341 0.91748 0.91493 0.86288 0.88230 0.87871 0.91758 0.91110 0.90741 0.94695 0.95183 0.90297 0.94040 0.92454 0.90127 0.92154 0.93593 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -1.01 5.88 -104.63 -0.62 -1.62 16 3 C -0.13 -1.44 9.36 -39.58 -0.37 -1.82 16 4 C -0.08 -1.02 5.88 -104.63 -0.62 -1.63 16 5 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 6 C -0.11 -1.47 9.36 -39.58 -0.37 -1.84 16 7 C -0.05 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.11 -1.44 4.14 -29.03 -0.12 -1.56 16 9 C 0.52 8.77 5.01 -10.99 -0.06 8.72 16 10 O -0.55 -10.97 15.43 5.55 0.09 -10.88 16 11 N -0.59 -10.28 1.64 -171.98 -0.28 -10.56 16 12 C 0.08 1.42 5.84 -3.24 -0.02 1.41 16 13 C 0.18 3.73 2.67 -66.60 -0.18 3.55 16 14 H 0.12 2.76 5.88 -51.93 -0.31 2.46 16 15 C -0.11 -2.29 5.57 -26.54 -0.15 -2.43 16 16 C -0.14 -2.65 5.55 -26.72 -0.15 -2.80 16 17 C -0.12 -2.37 5.58 -26.53 -0.15 -2.52 16 18 C 0.15 3.08 3.62 -66.87 -0.24 2.83 16 19 H 0.08 1.54 8.01 -51.93 -0.42 1.12 16 20 C 0.10 1.88 5.88 -3.51 -0.02 1.86 16 21 N -0.58 -13.25 2.53 -155.18 -0.39 -13.64 16 22 C -0.25 -6.36 9.71 -15.06 -0.15 -6.50 16 23 H 0.07 1.71 7.90 -52.49 -0.41 1.29 16 24 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16 25 N -0.90 -23.87 11.00 55.49 0.61 -23.26 16 26 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 C -0.11 -1.45 9.36 -39.58 -0.37 -1.82 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.10 1.14 7.85 -51.93 -0.41 0.73 16 40 H 0.10 1.30 7.64 -51.93 -0.40 0.91 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.02 5.90 -51.93 -0.31 0.71 16 43 H 0.07 1.75 7.99 -51.93 -0.41 1.34 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 46 H 0.08 1.45 2.49 -52.44 -0.13 1.32 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.08 1.49 6.99 -51.92 -0.36 1.12 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 52 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -29.31 394.90 -11.07 -40.38 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.62 Total: 5.03 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.39 Total: -8.61 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.06 Total: -47.47 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.31 -11.07 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039887526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.844 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds