Wall clock time and date at job start Wed Apr 1 2020 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 119.99960 * 2 1 4 4 C 1.38234 * 120.00038 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00048 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00387 * 359.95504 * 4 3 2 7 7 C 1.38240 * 119.99634 * 0.02846 * 6 4 3 8 8 C 1.50703 * 119.99964 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47517 * 89.99395 * 8 7 6 10 10 O 1.21284 * 119.99644 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00290 * 179.97438 * 9 8 7 12 12 C 1.46951 * 120.44203 * 359.72373 * 11 9 8 13 13 C 1.54069 * 108.29146 * 125.70841 * 12 11 9 14 14 H 1.09001 * 110.52506 * 172.27729 * 13 12 11 15 15 C 1.53361 * 108.83487 * 294.52864 * 13 12 11 16 16 C 1.53012 * 109.25602 * 60.26489 * 15 13 12 17 17 C 1.53005 * 109.79991 * 60.58108 * 16 15 13 18 18 C 1.53378 * 109.26617 * 299.43133 * 17 16 15 19 19 H 1.09001 * 111.08073 * 177.80338 * 18 17 16 20 20 C 1.46949 * 120.44818 * 179.97438 * 11 9 8 21 21 N 1.47567 * 107.98378 * 56.34910 * 18 17 16 22 22 C 1.36940 * 121.60610 * 122.25236 * 21 18 17 23 23 H 1.07997 * 120.00377 * 27.51759 * 22 21 18 24 24 C 1.38815 * 119.99603 * 207.51447 * 22 21 18 25 25 N 1.31611 * 120.00466 * 18.63439 * 24 22 21 26 26 Si 1.86805 * 119.99704 * 198.63892 * 24 22 21 27 27 H 1.48500 * 109.47270 * 89.99852 * 26 24 22 28 28 H 1.48501 * 109.46930 * 210.00025 * 26 24 22 29 29 H 1.48503 * 109.47228 * 329.99675 * 26 24 22 30 30 C 1.38234 * 120.00302 * 180.23246 * 2 1 3 31 31 H 1.08997 * 109.47361 * 89.99809 * 1 2 3 32 32 H 1.08998 * 109.47167 * 210.00070 * 1 2 3 33 33 H 1.09000 * 109.47182 * 329.99721 * 1 2 3 34 34 H 1.08001 * 120.00047 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.47236 * 269.97774 * 5 4 3 36 36 H 1.09005 * 109.47207 * 29.97610 * 5 4 3 37 37 H 1.09004 * 109.47132 * 149.97649 * 5 4 3 38 38 H 1.08001 * 120.00684 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.46588 * 209.99620 * 8 7 6 40 40 H 1.08997 * 109.46755 * 329.99030 * 8 7 6 41 41 H 1.08992 * 109.62660 * 245.47405 * 12 11 9 42 42 H 1.08997 * 109.62371 * 6.04550 * 12 11 9 43 43 H 1.09006 * 109.51103 * 180.19726 * 15 13 12 44 44 H 1.08999 * 109.50997 * 300.28553 * 15 13 12 45 45 H 1.09009 * 109.41698 * 180.68198 * 16 15 13 46 46 H 1.09002 * 109.42024 * 300.47876 * 16 15 13 47 47 H 1.08992 * 109.50870 * 179.49218 * 17 16 15 48 48 H 1.09000 * 109.50288 * 59.36327 * 17 16 15 49 49 H 1.09008 * 109.62152 * 353.96468 * 20 11 9 50 50 H 1.08997 * 109.62522 * 114.34251 * 20 11 9 51 51 H 0.96995 * 120.00444 * 180.02562 * 25 24 22 52 52 H 1.07996 * 119.99659 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0001 7 6 3.5806 -1.1971 0.0002 8 6 4.3341 -2.5022 0.0001 9 6 4.5859 -2.9371 1.4208 10 8 4.1919 -2.2546 2.3427 11 7 5.2481 -4.0848 1.6669 12 6 5.7236 -4.9227 0.5573 13 6 7.2338 -5.1631 0.7455 14 1 7.5983 -5.8906 0.0203 15 6 7.9697 -3.8252 0.6025 16 6 7.4651 -2.8548 1.6726 17 6 7.7422 -3.4279 3.0640 18 6 7.0057 -4.7645 3.2167 19 1 7.2142 -5.2186 4.1855 20 6 5.4996 -4.5179 3.0484 21 7 7.4418 -5.6527 2.1220 22 6 8.0126 -6.8723 2.3715 23 1 7.7717 -7.4057 3.2790 24 6 8.9007 -7.4228 1.4576 25 7 9.4778 -6.6562 0.5569 26 14 9.2767 -9.2520 1.5063 27 1 8.3175 -9.9779 0.6355 28 1 10.6606 -9.4859 1.0212 29 1 9.1509 -9.7463 2.9010 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6581 2.1325 0.0004 35 1 4.5156 2.8165 -1.0289 36 1 3.7449 3.2622 0.5124 37 1 5.2865 2.3722 0.5128 38 1 5.3517 0.0001 -0.0010 39 1 3.7447 -3.2618 -0.5135 40 1 5.2862 -2.3718 -0.5142 41 1 5.1945 -5.8755 0.5652 42 1 5.5481 -4.4111 -0.3890 43 1 9.0406 -3.9833 0.7305 44 1 7.7789 -3.4087 -0.3865 45 1 7.9779 -1.8989 1.5657 46 1 6.3925 -2.7052 1.5494 47 1 7.3893 -2.7291 3.8223 48 1 8.8137 -3.5869 3.1853 49 1 5.1764 -3.7401 3.7404 50 1 4.9505 -5.4378 3.2493 51 1 10.0981 -7.0409 -0.0819 52 1 1.6582 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039887526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:36 Heat of formation + Delta-G solvation = 13.458446 kcal Electronic energy + Delta-G solvation = -31562.585349 eV Core-core repulsion = 27720.204134 eV Total energy + Delta-G solvation = -3842.381215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.15194 -40.46399 -39.07852 -35.56961 -34.72666 -34.34701 -34.32683 -33.38100 -32.13776 -29.78515 -28.30889 -27.74902 -27.52508 -26.93532 -25.37160 -23.26332 -22.95829 -22.00497 -21.59027 -20.49935 -19.92497 -18.60907 -17.75322 -17.24661 -16.91376 -16.81734 -16.41121 -16.21395 -15.76948 -15.26569 -15.11465 -14.93725 -14.81744 -14.57359 -14.43875 -14.10800 -13.97116 -13.82312 -13.81129 -13.65137 -13.40384 -13.31575 -13.20600 -13.07521 -13.03667 -12.59975 -12.53752 -12.45840 -12.28587 -12.11166 -11.96744 -11.82352 -11.77288 -11.72564 -11.64189 -11.23229 -11.06623 -10.78599 -10.41934 -9.47050 -9.43257 -9.38477 -8.44946 -7.80798 -5.25466 0.45388 0.51680 1.49231 1.52380 1.58890 1.65333 2.09569 2.54152 2.85291 3.30859 3.51898 3.66412 3.77518 3.88202 3.97867 4.13005 4.15626 4.24163 4.26623 4.30000 4.35572 4.38593 4.45788 4.49579 4.55152 4.62286 4.67700 4.71386 4.73216 4.76421 4.83431 4.84114 4.86840 4.87749 4.92187 5.02831 5.03322 5.09452 5.11358 5.26799 5.30131 5.35778 5.39645 5.44960 5.55511 5.66420 5.67897 5.69551 5.76609 5.77860 5.87542 6.19154 6.42495 6.53717 7.18396 7.22020 7.85201 8.44329 9.22050 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002896 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.719772 B = 9665.555665 C = 9959.419469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.065 4.065 8 C -0.101 4.101 9 C 0.519 3.481 10 O -0.578 6.578 11 N -0.592 5.592 12 C 0.094 3.906 13 C 0.174 3.826 14 H 0.087 0.913 15 C -0.104 4.104 16 C -0.135 4.135 17 C -0.116 4.116 18 C 0.148 3.852 19 H 0.071 0.929 20 C 0.111 3.889 21 N -0.593 5.593 22 C -0.258 4.258 23 H 0.062 0.938 24 C -0.039 4.039 25 N -0.918 5.918 26 Si 0.959 3.041 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.277 1.277 30 C -0.129 4.129 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.033 0.967 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.031 0.969 49 H 0.081 0.919 50 H 0.063 0.937 51 H 0.249 0.751 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.643 13.628 -5.065 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.093 4.093 5 C -0.168 4.168 6 C -0.150 4.150 7 C -0.065 4.065 8 C -0.141 4.141 9 C 0.310 3.690 10 O -0.458 6.458 11 N -0.324 5.324 12 C -0.030 4.030 13 C 0.067 3.933 14 H 0.104 0.896 15 C -0.143 4.143 16 C -0.172 4.172 17 C -0.156 4.156 18 C 0.041 3.959 19 H 0.090 0.910 20 C -0.013 4.013 21 N -0.315 5.315 22 C -0.388 4.388 23 H 0.079 0.921 24 C -0.236 4.236 25 N -0.563 5.563 26 Si 0.789 3.211 27 H -0.212 1.212 28 H -0.227 1.227 29 H -0.202 1.202 30 C -0.147 4.147 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.058 0.942 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.722 13.886 -4.673 20.770 hybrid contribution 1.150 -1.339 0.253 1.783 sum -13.571 12.547 -4.421 19.004 Atomic orbital electron populations 1.20804 0.89398 1.03311 1.03141 1.20198 0.97441 0.92820 0.98777 1.21152 0.93477 0.98255 1.02166 1.20176 0.94438 0.95782 0.98882 1.20812 0.99733 0.93146 1.03099 1.21023 0.99798 0.92132 1.02018 1.19394 0.93931 0.93736 0.99447 1.20817 1.03261 0.96559 0.93419 1.20671 0.76313 0.79953 0.92064 1.90675 1.53044 1.54570 1.47523 1.48193 1.54492 1.22000 1.07755 1.22654 0.96634 0.94621 0.89062 1.21179 0.90276 0.94263 0.87624 0.89567 1.21680 0.99602 0.95991 0.97048 1.22107 1.03303 0.96849 0.94982 1.21825 0.98961 0.97344 0.97439 1.21310 0.91816 0.90317 0.92442 0.91040 1.21974 0.96805 0.99385 0.83156 1.44603 1.69989 1.16292 1.00627 1.19368 1.18918 0.94123 1.06366 0.92052 1.25575 0.96541 1.01231 1.00222 1.70120 1.30155 1.34307 1.21712 0.85403 0.76299 0.81812 0.77634 1.21172 1.22673 1.20233 1.21031 0.93353 0.98428 1.01893 0.89934 0.91494 0.90592 0.84297 0.89981 0.90449 0.91828 0.86437 0.85781 0.86712 0.91636 0.87559 0.94837 0.92274 0.94497 0.89041 0.92696 0.94974 0.90035 0.91870 0.94184 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.23 0.71 -0.93 16 2 C -0.09 -1.98 5.88 -19.87 -0.12 -2.10 16 3 C -0.13 -2.76 9.36 22.27 0.21 -2.55 16 4 C -0.09 -2.09 5.88 -19.87 -0.12 -2.20 16 5 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 6 C -0.13 -3.37 9.36 22.27 0.21 -3.17 16 7 C -0.06 -1.67 4.37 -19.86 -0.09 -1.76 16 8 C -0.10 -2.48 4.14 29.10 0.12 -2.36 16 9 C 0.52 16.54 5.01 87.66 0.44 16.98 16 10 O -0.58 -22.25 15.43 -3.04 -0.05 -22.30 16 11 N -0.59 -19.56 1.64 -816.40 -1.34 -20.89 16 12 C 0.09 3.06 5.84 86.66 0.51 3.57 16 13 C 0.17 7.25 2.67 45.27 0.12 7.37 16 14 H 0.09 4.17 5.88 -2.39 -0.01 4.16 16 15 C -0.10 -4.17 5.57 30.72 0.17 -3.99 16 16 C -0.13 -5.00 5.55 30.60 0.17 -4.83 16 17 C -0.12 -4.61 5.58 30.72 0.17 -4.44 16 18 C 0.15 6.02 3.62 45.10 0.16 6.18 16 19 H 0.07 2.91 8.01 -2.39 -0.02 2.90 16 20 C 0.11 3.98 5.88 86.48 0.51 4.49 16 21 N -0.59 -27.43 2.53 -644.86 -1.63 -29.06 16 22 C -0.26 -13.34 9.71 84.03 0.82 -12.52 16 23 H 0.06 3.18 7.90 -2.91 -0.02 3.15 16 24 C -0.04 -2.05 4.97 84.86 0.42 -1.63 16 25 N -0.92 -50.03 11.00 21.65 0.24 -49.79 16 26 Si 0.96 43.00 29.59 68.60 2.03 45.03 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 28 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 30 C -0.13 -3.11 9.36 22.27 0.21 -2.90 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.08 0.95 8.09 -2.39 -0.02 0.94 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 37 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 38 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.12 2.41 7.85 -2.39 -0.02 2.39 16 40 H 0.11 2.55 7.64 -2.39 -0.02 2.53 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.11 2.71 5.90 -2.39 -0.01 2.69 16 43 H 0.03 1.60 7.99 -2.38 -0.02 1.58 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.09 3.21 2.49 -3.40 -0.01 3.20 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 2.92 6.99 -2.38 -0.02 2.91 16 50 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 52 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.87 394.90 5.49 -58.38 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.90 Total: 26.57 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.34 Total: -7.94 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -2.73 Total: -99.74 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.87 5.49 -58.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039887526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.841 kcal (2) G-P(sol) polarization free energy of solvation -63.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds