Wall clock time and date at job start Wed Apr 1 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 119.99746 * 2 1 4 4 C 1.38206 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99795 * 359.84842 * 4 3 2 6 6 C 1.50700 * 119.99966 * 180.21203 * 5 4 3 7 7 C 1.38209 * 120.00256 * 0.40293 * 5 4 3 8 8 C 1.50699 * 120.00285 * 179.80673 * 7 5 4 9 9 C 1.50696 * 109.47144 * 84.72593 * 8 7 5 10 10 O 1.21284 * 119.99889 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00187 * 179.97438 * 9 8 7 12 12 C 1.46952 * 120.43923 * 359.72766 * 11 9 8 13 13 C 1.54066 * 108.28845 * 125.71253 * 12 11 9 14 14 H 1.09005 * 110.51977 * 172.27757 * 13 12 11 15 15 C 1.53363 * 108.83259 * 294.51987 * 13 12 11 16 16 C 1.53012 * 109.25562 * 60.26841 * 15 13 12 17 17 C 1.53010 * 109.79327 * 60.58035 * 16 15 13 18 18 C 1.53364 * 109.27012 * 299.42950 * 17 16 15 19 19 H 1.08999 * 111.08892 * 177.80942 * 18 17 16 20 20 C 1.46944 * 120.44756 * 180.02562 * 11 9 8 21 21 N 1.47562 * 107.98544 * 56.35226 * 18 17 16 22 22 C 1.36940 * 121.61347 * 122.25112 * 21 18 17 23 23 H 1.08005 * 119.99704 * 27.51926 * 22 21 18 24 24 C 1.38808 * 120.00631 * 207.51820 * 22 21 18 25 25 N 1.31624 * 119.99630 * 18.63777 * 24 22 21 26 26 Si 1.86794 * 120.00416 * 198.63129 * 24 22 21 27 27 H 1.48503 * 109.47020 * 89.99806 * 26 24 22 28 28 H 1.48499 * 109.47665 * 210.00125 * 26 24 22 29 29 H 1.48505 * 109.47240 * 330.00424 * 26 24 22 30 30 C 1.38208 * 120.00181 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47436 * 269.97685 * 1 2 3 32 32 H 1.08996 * 109.47454 * 29.98427 * 1 2 3 33 33 H 1.09006 * 109.47210 * 149.98395 * 1 2 3 34 34 H 1.08002 * 119.99669 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00300 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.47431 * 270.18998 * 6 5 4 37 37 H 1.09000 * 109.47193 * 30.19230 * 6 5 4 38 38 H 1.09003 * 109.47587 * 150.19219 * 6 5 4 39 39 H 1.09003 * 109.47348 * 324.72641 * 8 7 5 40 40 H 1.09003 * 109.47335 * 204.72530 * 8 7 5 41 41 H 1.08996 * 109.62142 * 245.47165 * 12 11 9 42 42 H 1.08991 * 109.62741 * 6.03893 * 12 11 9 43 43 H 1.09003 * 109.51101 * 180.20308 * 15 13 12 44 44 H 1.09000 * 109.50775 * 300.28957 * 15 13 12 45 45 H 1.09005 * 109.41789 * 180.67734 * 16 15 13 46 46 H 1.09002 * 109.41587 * 300.54856 * 16 15 13 47 47 H 1.09003 * 109.50224 * 179.49569 * 17 16 15 48 48 H 1.08995 * 109.50828 * 59.37272 * 17 16 15 49 49 H 1.09010 * 109.62221 * 353.96371 * 20 11 9 50 50 H 1.08994 * 109.63288 * 114.53888 * 20 11 9 51 51 H 0.97001 * 119.99977 * 180.02562 * 25 24 22 52 52 H 1.08004 * 120.00004 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2716 0.0002 0.0042 6 6 5.7786 0.0002 0.0097 7 6 3.5807 -1.1968 -0.0010 8 6 4.3342 -2.5019 -0.0014 9 6 4.6934 -2.8749 1.4138 10 8 4.3691 -2.1524 2.3323 11 7 5.3743 -4.0119 1.6589 12 6 5.7660 -4.8980 0.5540 13 6 7.2864 -5.1325 0.6380 14 1 7.5962 -5.8915 -0.0804 15 6 8.0072 -3.8033 0.3816 16 6 7.5833 -2.7864 1.4435 17 6 7.9658 -3.2989 2.8335 18 6 7.2452 -4.6263 3.0996 19 1 7.5269 -5.0382 4.0686 20 6 5.7292 -4.3854 3.0350 21 7 7.5987 -5.5621 2.0148 22 6 8.1888 -6.7705 2.2731 23 1 8.0181 -7.2636 3.2187 24 6 9.0062 -7.3618 1.3197 25 7 9.5124 -6.6359 0.3454 26 14 9.3879 -9.1876 1.4194 27 1 8.3669 -9.9492 0.6560 28 1 10.7316 -9.4448 0.8417 29 1 9.3687 -9.6206 2.8398 30 6 2.1981 -1.1969 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6581 2.1327 -0.0004 35 1 4.1203 2.1328 0.0010 36 1 6.1457 0.0026 -1.0167 37 1 6.1401 0.8890 0.5269 38 1 6.1402 -0.8910 0.5227 39 1 5.2446 -2.3957 -0.5914 40 1 3.7090 -3.2823 -0.4353 41 1 5.2405 -5.8488 0.6434 42 1 5.5185 -4.4279 -0.3977 43 1 9.0849 -3.9574 0.4349 44 1 7.7414 -3.4300 -0.6074 45 1 8.0850 -1.8369 1.2566 46 1 6.5040 -2.6416 1.3960 47 1 7.6698 -2.5671 3.5853 48 1 9.0436 -3.4541 2.8804 49 1 5.4574 -3.5780 3.7152 50 1 5.2011 -5.2969 3.3149 51 1 10.0833 -7.0492 -0.3211 52 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039887587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:44 Heat of formation + Delta-G solvation = 27.890624 kcal Electronic energy + Delta-G solvation = -32073.863839 eV Core-core repulsion = 28232.108450 eV Total energy + Delta-G solvation = -3841.755389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.83944 -39.46500 -37.59419 -34.21028 -33.94206 -32.91610 -32.36740 -31.71799 -30.36031 -29.27294 -28.23602 -26.47439 -25.48597 -24.73476 -23.65166 -22.26817 -21.57243 -21.24286 -20.33467 -19.13786 -18.26220 -17.17109 -16.30265 -15.91604 -15.75965 -15.42289 -14.84147 -14.77013 -14.47344 -14.06956 -13.95801 -13.58469 -13.34671 -13.31856 -13.13760 -12.94369 -12.85975 -12.70618 -12.67367 -12.46188 -12.12028 -11.96525 -11.83273 -11.71029 -11.47377 -11.38669 -11.21417 -10.97413 -10.91926 -10.79262 -10.73525 -10.30114 -10.13685 -10.09816 -10.01982 -9.64072 -9.39891 -9.31999 -8.69546 -8.55272 -8.31056 -7.86742 -6.65454 -5.87196 -3.29632 1.37816 1.44633 2.97009 3.32538 3.39615 3.40929 3.42955 3.83160 4.41535 4.66598 4.77630 4.88201 4.96429 5.02985 5.16803 5.17944 5.26493 5.28453 5.43327 5.49051 5.56473 5.57416 5.69267 5.71686 5.71880 5.73352 5.75753 5.78770 5.84947 5.90883 5.97680 6.00513 6.14245 6.16603 6.25716 6.28611 6.37394 6.44671 6.47906 6.48193 6.58943 6.61468 6.71099 6.73584 6.84889 6.99832 7.05960 7.07404 7.11458 7.44008 7.52495 7.71043 7.91516 8.32296 8.56882 9.09269 9.71282 10.33234 11.19501 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.003075 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.334440 B = 9102.292770 C = 9333.088880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.124 4.124 7 C -0.055 4.055 8 C -0.108 4.108 9 C 0.517 3.483 10 O -0.547 6.547 11 N -0.591 5.591 12 C 0.082 3.918 13 C 0.178 3.822 14 H 0.116 0.884 15 C -0.114 4.114 16 C -0.141 4.141 17 C -0.121 4.121 18 C 0.152 3.848 19 H 0.077 0.923 20 C 0.102 3.898 21 N -0.579 5.579 22 C -0.249 4.249 23 H 0.067 0.933 24 C 0.004 3.996 25 N -0.896 5.896 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.082 0.918 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.254 0.746 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 11.499 -3.688 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.070 4.070 6 C -0.181 4.181 7 C -0.056 4.056 8 C -0.147 4.147 9 C 0.306 3.694 10 O -0.425 6.425 11 N -0.324 5.324 12 C -0.042 4.042 13 C 0.070 3.930 14 H 0.134 0.866 15 C -0.153 4.153 16 C -0.179 4.179 17 C -0.160 4.160 18 C 0.044 3.956 19 H 0.095 0.905 20 C -0.022 4.022 21 N -0.300 5.300 22 C -0.379 4.379 23 H 0.085 0.915 24 C -0.195 4.195 25 N -0.540 5.540 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.205 1.205 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.307 11.761 -3.305 17.341 hybrid contribution 0.452 -0.990 -0.049 1.090 sum -11.855 10.771 -3.354 16.364 Atomic orbital electron populations 1.20749 0.91462 1.02390 1.02154 1.19788 0.95801 0.93122 1.00924 1.20924 0.94129 0.97233 1.01582 1.20936 0.94105 0.97285 1.01306 1.19701 0.95994 0.92492 0.98764 1.20960 0.91301 1.03683 1.02126 1.19171 0.93255 0.93310 0.99857 1.20797 1.01983 0.95978 0.95981 1.20092 0.77485 0.81077 0.90746 1.90687 1.54596 1.51109 1.46117 1.48185 1.53851 1.21586 1.08789 1.22820 1.00569 0.93041 0.87767 1.21224 0.87087 0.95542 0.89140 0.86631 1.21824 1.02564 0.95669 0.95229 1.22197 1.02616 0.97106 0.95976 1.21887 1.00580 0.97168 0.96343 1.21237 0.90660 0.90220 0.93448 0.90524 1.22222 0.97998 0.99743 0.82270 1.44412 1.69436 1.16136 0.99974 1.19163 1.22013 0.94012 1.02667 0.91488 1.24995 0.96655 0.98409 0.99405 1.69986 1.33718 1.33745 1.16594 0.86298 0.77217 0.85563 0.77721 1.21490 1.21859 1.20531 1.20819 0.93274 0.97505 1.00633 0.91392 0.91825 0.91742 0.86474 0.86285 0.91210 0.91630 0.90662 0.87796 0.88345 0.91742 0.91134 0.90706 0.94688 0.95044 0.90055 0.94034 0.92426 0.90091 0.92127 0.93598 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.13 5.88 -104.62 -0.62 -1.75 16 3 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 4 C -0.12 -1.45 9.70 -39.59 -0.38 -1.83 16 5 C -0.07 -0.95 5.88 -104.63 -0.62 -1.56 16 6 C -0.12 -1.59 9.22 36.01 0.33 -1.26 16 7 C -0.06 -0.78 4.37 -104.63 -0.46 -1.23 16 8 C -0.11 -1.47 3.46 -29.04 -0.10 -1.57 16 9 C 0.52 8.70 4.45 -10.99 -0.05 8.65 16 10 O -0.55 -10.82 15.43 5.55 0.09 -10.74 16 11 N -0.59 -10.21 1.63 -171.92 -0.28 -10.49 16 12 C 0.08 1.41 5.84 -3.24 -0.02 1.39 16 13 C 0.18 3.69 2.67 -66.60 -0.18 3.52 16 14 H 0.12 2.75 5.88 -51.93 -0.31 2.44 16 15 C -0.11 -2.26 5.57 -26.54 -0.15 -2.40 16 16 C -0.14 -2.61 4.69 -26.72 -0.13 -2.74 16 17 C -0.12 -2.34 5.58 -26.54 -0.15 -2.49 16 18 C 0.15 3.05 3.62 -66.83 -0.24 2.80 16 19 H 0.08 1.53 8.01 -51.93 -0.42 1.11 16 20 C 0.10 1.85 5.89 -3.47 -0.02 1.83 16 21 N -0.58 -13.14 2.53 -155.14 -0.39 -13.53 16 22 C -0.25 -6.32 9.71 -15.06 -0.15 -6.47 16 23 H 0.07 1.70 7.90 -52.48 -0.41 1.29 16 24 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16 25 N -0.90 -23.75 11.00 55.49 0.61 -23.14 16 26 Si 0.90 20.57 29.59 -169.99 -5.03 15.54 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 C -0.10 -1.35 9.34 -39.58 -0.37 -1.72 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.07 1.10 4.13 -51.93 -0.21 0.88 16 39 H 0.10 1.34 6.56 -51.93 -0.34 1.00 16 40 H 0.10 1.14 7.82 -51.93 -0.41 0.74 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.01 5.90 -51.93 -0.31 0.70 16 43 H 0.07 1.74 7.99 -51.93 -0.41 1.33 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 46 H 0.08 1.44 1.55 -52.50 -0.08 1.36 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.08 1.48 6.99 -51.92 -0.36 1.12 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 52 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -28.97 386.52 -10.88 -39.85 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.30 Total: 5.87 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.40 Total: -9.19 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.06 Total: -47.15 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.97 -10.88 -39.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039887587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.743 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds