Wall clock time and date at job start Wed Apr 1 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 119.99746 * 2 1 4 4 C 1.38206 * 120.00056 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99795 * 359.84842 * 4 3 2 6 6 C 1.50700 * 119.99966 * 180.21203 * 5 4 3 7 7 C 1.38209 * 120.00256 * 0.40293 * 5 4 3 8 8 C 1.50699 * 120.00285 * 179.80673 * 7 5 4 9 9 C 1.50696 * 109.47144 * 84.72593 * 8 7 5 10 10 O 1.21284 * 119.99889 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00187 * 179.97438 * 9 8 7 12 12 C 1.46952 * 120.43923 * 359.72766 * 11 9 8 13 13 C 1.54066 * 108.28845 * 125.71253 * 12 11 9 14 14 H 1.09005 * 110.51977 * 172.27757 * 13 12 11 15 15 C 1.53363 * 108.83259 * 294.51987 * 13 12 11 16 16 C 1.53012 * 109.25562 * 60.26841 * 15 13 12 17 17 C 1.53010 * 109.79327 * 60.58035 * 16 15 13 18 18 C 1.53364 * 109.27012 * 299.42950 * 17 16 15 19 19 H 1.08999 * 111.08892 * 177.80942 * 18 17 16 20 20 C 1.46944 * 120.44756 * 180.02562 * 11 9 8 21 21 N 1.47562 * 107.98544 * 56.35226 * 18 17 16 22 22 C 1.36940 * 121.61347 * 122.25112 * 21 18 17 23 23 H 1.08005 * 119.99704 * 27.51926 * 22 21 18 24 24 C 1.38808 * 120.00631 * 207.51820 * 22 21 18 25 25 N 1.31624 * 119.99630 * 18.63777 * 24 22 21 26 26 Si 1.86794 * 120.00416 * 198.63129 * 24 22 21 27 27 H 1.48503 * 109.47020 * 89.99806 * 26 24 22 28 28 H 1.48499 * 109.47665 * 210.00125 * 26 24 22 29 29 H 1.48505 * 109.47240 * 330.00424 * 26 24 22 30 30 C 1.38208 * 120.00181 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47436 * 269.97685 * 1 2 3 32 32 H 1.08996 * 109.47454 * 29.98427 * 1 2 3 33 33 H 1.09006 * 109.47210 * 149.98395 * 1 2 3 34 34 H 1.08002 * 119.99669 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00300 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.47431 * 270.18998 * 6 5 4 37 37 H 1.09000 * 109.47193 * 30.19230 * 6 5 4 38 38 H 1.09003 * 109.47587 * 150.19219 * 6 5 4 39 39 H 1.09003 * 109.47348 * 324.72641 * 8 7 5 40 40 H 1.09003 * 109.47335 * 204.72530 * 8 7 5 41 41 H 1.08996 * 109.62142 * 245.47165 * 12 11 9 42 42 H 1.08991 * 109.62741 * 6.03893 * 12 11 9 43 43 H 1.09003 * 109.51101 * 180.20308 * 15 13 12 44 44 H 1.09000 * 109.50775 * 300.28957 * 15 13 12 45 45 H 1.09005 * 109.41789 * 180.67734 * 16 15 13 46 46 H 1.09002 * 109.41587 * 300.54856 * 16 15 13 47 47 H 1.09003 * 109.50224 * 179.49569 * 17 16 15 48 48 H 1.08995 * 109.50828 * 59.37272 * 17 16 15 49 49 H 1.09010 * 109.62221 * 353.96371 * 20 11 9 50 50 H 1.08994 * 109.63288 * 114.53888 * 20 11 9 51 51 H 0.97001 * 119.99977 * 180.02562 * 25 24 22 52 52 H 1.08004 * 120.00004 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2716 0.0002 0.0042 6 6 5.7786 0.0002 0.0097 7 6 3.5807 -1.1968 -0.0010 8 6 4.3342 -2.5019 -0.0014 9 6 4.6934 -2.8749 1.4138 10 8 4.3691 -2.1524 2.3323 11 7 5.3743 -4.0119 1.6589 12 6 5.7660 -4.8980 0.5540 13 6 7.2864 -5.1325 0.6380 14 1 7.5962 -5.8915 -0.0804 15 6 8.0072 -3.8033 0.3816 16 6 7.5833 -2.7864 1.4435 17 6 7.9658 -3.2989 2.8335 18 6 7.2452 -4.6263 3.0996 19 1 7.5269 -5.0382 4.0686 20 6 5.7292 -4.3854 3.0350 21 7 7.5987 -5.5621 2.0148 22 6 8.1888 -6.7705 2.2731 23 1 8.0181 -7.2636 3.2187 24 6 9.0062 -7.3618 1.3197 25 7 9.5124 -6.6359 0.3454 26 14 9.3879 -9.1876 1.4194 27 1 8.3669 -9.9492 0.6560 28 1 10.7316 -9.4448 0.8417 29 1 9.3687 -9.6206 2.8398 30 6 2.1981 -1.1969 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6581 2.1327 -0.0004 35 1 4.1203 2.1328 0.0010 36 1 6.1457 0.0026 -1.0167 37 1 6.1401 0.8890 0.5269 38 1 6.1402 -0.8910 0.5227 39 1 5.2446 -2.3957 -0.5914 40 1 3.7090 -3.2823 -0.4353 41 1 5.2405 -5.8488 0.6434 42 1 5.5185 -4.4279 -0.3977 43 1 9.0849 -3.9574 0.4349 44 1 7.7414 -3.4300 -0.6074 45 1 8.0850 -1.8369 1.2566 46 1 6.5040 -2.6416 1.3960 47 1 7.6698 -2.5671 3.5853 48 1 9.0436 -3.4541 2.8804 49 1 5.4574 -3.5780 3.7152 50 1 5.2011 -5.2969 3.3149 51 1 10.0833 -7.0492 -0.3211 52 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039887587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:43 Heat of formation + Delta-G solvation = 15.903242 kcal Electronic energy + Delta-G solvation = -32074.383651 eV Core-core repulsion = 28232.108450 eV Total energy + Delta-G solvation = -3842.275201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.22299 -40.49887 -39.03238 -35.56592 -35.13751 -34.55375 -33.63639 -33.01734 -32.13847 -30.10416 -29.45232 -27.98339 -26.96272 -25.62072 -25.34665 -23.42408 -23.05322 -22.70180 -21.46566 -20.42081 -19.91173 -18.61564 -17.77754 -17.06692 -16.89962 -16.64340 -16.37394 -16.21198 -15.80113 -15.46965 -15.21834 -14.94562 -14.80710 -14.55125 -14.40709 -14.13397 -13.98792 -13.93206 -13.77403 -13.58133 -13.41929 -13.35262 -13.07368 -13.03094 -12.92978 -12.68384 -12.59770 -12.44458 -12.30509 -12.09742 -11.92273 -11.79658 -11.73917 -11.69057 -11.60935 -11.21684 -11.05609 -10.79435 -10.41179 -9.63281 -9.42563 -9.21544 -8.44363 -7.80476 -5.24991 0.45455 0.53673 1.49292 1.52570 1.58951 1.65061 2.09648 2.54400 2.86270 3.31189 3.52266 3.66657 3.77559 3.90514 4.06006 4.13777 4.16027 4.16934 4.24730 4.30045 4.33785 4.37103 4.39784 4.50287 4.52900 4.64081 4.68335 4.74301 4.76661 4.79253 4.84063 4.85608 4.86673 4.89091 4.92216 4.93901 5.04571 5.12023 5.16986 5.26743 5.27904 5.36921 5.41489 5.48455 5.55903 5.58279 5.69175 5.74004 5.78129 5.79386 5.88801 6.19897 6.42919 6.53492 7.18824 7.22167 7.85675 8.44706 9.22317 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.003075 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.334440 B = 9102.292770 C = 9333.088880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.075 4.075 8 C -0.103 4.103 9 C 0.520 3.480 10 O -0.575 6.575 11 N -0.592 5.592 12 C 0.093 3.907 13 C 0.174 3.826 14 H 0.086 0.914 15 C -0.104 4.104 16 C -0.135 4.135 17 C -0.117 4.117 18 C 0.148 3.852 19 H 0.071 0.929 20 C 0.111 3.889 21 N -0.593 5.593 22 C -0.257 4.257 23 H 0.061 0.939 24 C -0.039 4.039 25 N -0.917 5.917 26 Si 0.958 3.042 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.277 1.277 30 C -0.120 4.120 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.031 0.969 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.249 0.751 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 12.610 -4.499 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.089 4.089 6 C -0.178 4.178 7 C -0.075 4.075 8 C -0.142 4.142 9 C 0.311 3.689 10 O -0.455 6.455 11 N -0.325 5.325 12 C -0.031 4.031 13 C 0.067 3.933 14 H 0.104 0.896 15 C -0.143 4.143 16 C -0.173 4.173 17 C -0.157 4.157 18 C 0.041 3.959 19 H 0.089 0.911 20 C -0.014 4.014 21 N -0.315 5.315 22 C -0.387 4.387 23 H 0.079 0.921 24 C -0.235 4.235 25 N -0.562 5.562 26 Si 0.788 3.212 27 H -0.212 1.212 28 H -0.227 1.227 29 H -0.203 1.203 30 C -0.138 4.138 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.058 0.942 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.477 12.881 -4.115 19.810 hybrid contribution 1.103 -1.261 0.254 1.694 sum -13.374 11.620 -3.861 18.133 Atomic orbital electron populations 1.20793 0.89464 1.03661 1.02670 1.20182 0.97424 0.92870 0.99955 1.21282 0.94112 0.98288 1.00639 1.21229 0.94757 0.97635 1.00948 1.19917 0.96409 0.93072 0.99551 1.20935 0.91124 1.02908 1.02846 1.19290 0.93815 0.93373 1.01032 1.20818 1.02895 0.96873 0.93611 1.20625 0.76408 0.80007 0.91864 1.90676 1.55591 1.51792 1.47464 1.48203 1.54080 1.21944 1.08277 1.22659 0.97493 0.93663 0.89236 1.21175 0.89699 0.94943 0.87512 0.89600 1.21678 0.99823 0.95825 0.96999 1.22178 1.03500 0.96874 0.94735 1.21833 0.98885 0.97346 0.97592 1.21324 0.92115 0.89883 0.92568 0.91099 1.22004 0.96252 0.99894 0.83218 1.44592 1.69491 1.16044 1.01343 1.19361 1.21766 0.95187 1.02430 0.92097 1.25565 0.97055 1.01370 0.99557 1.70126 1.34387 1.34642 1.17086 0.85410 0.76398 0.81875 0.77506 1.21201 1.22671 1.20265 1.21071 0.93221 0.98551 1.00914 0.91118 0.90215 0.90917 0.84108 0.84607 0.89764 0.91128 0.92588 0.86852 0.86015 0.91674 0.87686 0.94805 0.92306 0.94234 0.88663 0.92697 0.94963 0.89975 0.91909 0.94195 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.10 -2.20 5.88 -19.87 -0.12 -2.32 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 5 C -0.09 -2.27 5.88 -19.87 -0.12 -2.39 16 6 C -0.12 -2.89 9.22 71.24 0.66 -2.23 16 7 C -0.07 -1.93 4.37 -19.87 -0.09 -2.02 16 8 C -0.10 -2.54 3.46 29.10 0.10 -2.44 16 9 C 0.52 16.46 4.45 87.66 0.39 16.85 16 10 O -0.57 -21.90 15.43 -3.04 -0.05 -21.95 16 11 N -0.59 -19.48 1.63 -816.24 -1.33 -20.82 16 12 C 0.09 3.03 5.84 86.65 0.51 3.54 16 13 C 0.17 7.21 2.67 45.27 0.12 7.33 16 14 H 0.09 4.14 5.88 -2.38 -0.01 4.13 16 15 C -0.10 -4.11 5.57 30.72 0.17 -3.94 16 16 C -0.14 -4.90 4.69 30.60 0.14 -4.76 16 17 C -0.12 -4.58 5.58 30.72 0.17 -4.41 16 18 C 0.15 5.97 3.62 45.12 0.16 6.14 16 19 H 0.07 2.88 8.01 -2.39 -0.02 2.86 16 20 C 0.11 3.94 5.89 86.51 0.51 4.45 16 21 N -0.59 -27.25 2.53 -644.73 -1.63 -28.89 16 22 C -0.26 -13.28 9.71 84.03 0.82 -12.46 16 23 H 0.06 3.15 7.90 -2.91 -0.02 3.12 16 24 C -0.04 -2.03 4.97 84.86 0.42 -1.61 16 25 N -0.92 -49.80 11.00 21.65 0.24 -49.56 16 26 Si 0.96 42.92 29.59 68.60 2.03 44.95 16 27 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 30 C -0.12 -2.85 9.34 22.27 0.21 -2.64 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.07 0.94 8.09 -2.38 -0.02 0.92 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 38 H 0.06 1.53 4.13 -2.39 -0.01 1.52 16 39 H 0.11 2.59 6.56 -2.39 -0.02 2.57 16 40 H 0.12 2.42 7.82 -2.39 -0.02 2.40 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.11 2.69 5.90 -2.39 -0.01 2.68 16 43 H 0.03 1.60 7.99 -2.39 -0.02 1.58 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.04 1.36 7.99 -2.38 -0.02 1.34 16 46 H 0.10 3.24 1.55 -3.51 -0.01 3.23 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.08 2.93 6.99 -2.38 -0.02 2.91 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 51 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 52 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -63.14 386.52 5.37 -57.77 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.91 Total: 27.26 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.20 Total: -8.78 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.73 Total: -99.26 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.14 5.37 -57.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039887587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.678 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds