Wall clock time and date at job start Wed Apr 1 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 120.00000 * 2 1 4 4 C 1.38228 * 120.00002 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00110 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00106 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47024 * 90.00215 * 6 5 4 8 8 O 1.21287 * 119.99787 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00237 * 179.97438 * 7 6 5 10 10 C 1.48212 * 127.05178 * 359.97438 * 9 7 6 11 11 C 1.55042 * 103.33738 * 218.99861 * 10 9 7 12 12 C 1.54182 * 102.72157 * 323.01155 * 11 10 9 13 13 C 1.47618 * 127.02634 * 180.02562 * 9 7 6 14 14 C 1.52493 * 110.01139 * 140.68287 * 12 11 10 15 15 C 1.53134 * 109.60421 * 61.56607 * 14 12 11 16 16 C 1.53184 * 109.28852 * 60.50922 * 15 14 12 17 17 N 1.46930 * 108.89943 * 304.93791 * 16 15 14 18 18 C 1.36932 * 120.67971 * 234.03912 * 17 16 15 19 19 H 1.08003 * 120.00539 * 152.60100 * 18 17 16 20 20 C 1.38815 * 120.00152 * 332.59932 * 18 17 16 21 21 N 1.31618 * 119.99895 * 159.32146 * 20 18 17 22 22 Si 1.86797 * 119.99756 * 339.32013 * 20 18 17 23 23 H 1.48498 * 109.47044 * 93.15850 * 22 20 18 24 24 H 1.48506 * 109.46930 * 213.15323 * 22 20 18 25 25 H 1.48501 * 109.47310 * 333.15500 * 22 20 18 26 26 C 1.47030 * 118.63774 * 54.01205 * 17 16 15 27 27 C 1.38239 * 119.99874 * 0.25622 * 5 4 3 28 28 C 1.38234 * 119.99866 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47105 * 89.99810 * 1 2 3 30 30 H 1.08996 * 109.47588 * 210.00054 * 1 2 3 31 31 H 1.09004 * 109.47046 * 329.99764 * 1 2 3 32 32 H 1.08003 * 120.00175 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00455 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47521 * 330.00083 * 6 5 4 35 35 H 1.09001 * 109.47015 * 210.00153 * 6 5 4 36 36 H 1.09000 * 110.62218 * 100.53870 * 10 9 7 37 37 H 1.09001 * 110.66051 * 337.46858 * 10 9 7 38 38 H 1.08999 * 110.76343 * 204.70103 * 11 10 9 39 39 H 1.09003 * 110.76001 * 81.31540 * 11 10 9 40 40 H 1.08998 * 109.97461 * 35.29189 * 13 9 7 41 41 H 1.09001 * 109.96865 * 274.06459 * 13 9 7 42 42 H 1.09002 * 109.44820 * 181.60707 * 14 12 11 43 43 H 1.08998 * 109.45122 * 301.54913 * 14 12 11 44 44 H 1.08993 * 109.50122 * 180.45850 * 15 14 12 45 45 H 1.09005 * 109.50016 * 300.52909 * 15 14 12 46 46 H 1.09002 * 109.56794 * 64.76570 * 16 15 14 47 47 H 1.09005 * 109.56807 * 184.99673 * 16 15 14 48 48 H 0.97006 * 119.99778 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.58270 * 187.42023 * 26 17 16 50 50 H 1.09005 * 109.58266 * 67.01282 * 26 17 16 51 51 H 1.07988 * 120.00347 * 179.73046 * 27 5 4 52 52 H 1.08001 * 119.99810 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2821 -0.0007 1.4176 8 8 5.4946 -0.0016 2.3401 9 7 7.6073 -0.0013 1.6630 10 6 8.7007 -0.0020 0.6624 11 6 9.7556 -0.9518 1.2860 12 6 9.6543 -0.6307 2.7906 13 6 8.2669 -0.0026 2.9836 14 6 9.7753 -1.9129 3.6072 15 6 11.1422 -2.5555 3.3551 16 6 12.2454 -1.5829 3.7838 17 7 12.0514 -0.3052 3.0846 18 6 13.0664 0.2525 2.3540 19 1 12.8390 0.8997 1.5198 20 6 14.3878 -0.0138 2.6856 21 7 15.3385 0.1613 1.7924 22 14 14.8166 -0.6206 4.3994 23 1 14.8459 -2.1053 4.4059 24 1 16.1504 -0.0975 4.7904 25 1 13.7946 -0.1414 5.3644 26 6 10.7450 0.3618 3.1851 27 6 3.5805 -1.1972 -0.0075 28 6 2.1981 -1.1972 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1206 2.1325 -0.0010 34 1 6.1417 0.8902 -0.5164 35 1 6.1416 -0.8898 -0.5173 36 1 9.1104 1.0007 0.5408 37 1 8.3483 -0.3927 -0.2922 38 1 10.7523 -0.7235 0.9084 39 1 9.4982 -1.9937 1.0952 40 1 7.6850 -0.5948 3.6898 41 1 8.3686 1.0190 3.3499 42 1 9.6740 -1.6791 4.6670 43 1 8.9884 -2.6069 3.3118 44 1 11.2237 -3.4759 3.9332 45 1 11.2479 -2.7817 2.2941 46 1 12.1918 -1.4217 4.8605 47 1 13.2193 -1.9984 3.5250 48 1 16.2620 -0.0245 2.0242 49 1 10.7198 1.2190 2.5122 50 1 10.5827 0.6947 4.2103 51 1 4.1204 -2.1324 -0.0127 52 1 1.6581 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040281201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:15 Heat of formation + Delta-G solvation = -8.299503 kcal Electronic energy + Delta-G solvation = -30057.102889 eV Core-core repulsion = 26213.778178 eV Total energy + Delta-G solvation = -3843.324711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.56958 -40.50775 -39.48626 -37.43766 -34.88586 -34.65283 -32.91369 -32.51522 -31.79423 -30.65875 -30.44910 -27.61524 -27.15183 -25.81438 -24.14315 -23.67062 -23.61566 -22.85093 -21.77568 -20.27968 -19.52235 -18.60489 -18.02818 -17.37104 -17.16301 -16.99252 -16.41654 -16.16422 -15.90756 -15.71622 -15.44100 -15.31373 -15.25524 -14.65633 -14.55095 -14.32508 -14.27621 -14.06329 -13.79373 -13.60621 -13.52629 -13.35764 -13.25919 -13.05313 -12.92400 -12.70191 -12.67273 -12.50105 -12.39152 -12.08393 -11.99384 -11.80898 -11.79085 -11.55025 -11.49526 -11.19484 -11.13318 -10.92984 -10.62646 -9.79176 -9.69747 -9.38078 -8.88592 -8.12586 -5.42632 0.39928 0.53814 1.31005 1.43228 1.50830 1.63151 1.99244 2.44330 2.86799 3.08583 3.30707 3.56306 3.72170 3.72499 3.80301 3.91189 3.95546 4.10487 4.15993 4.21677 4.25039 4.28312 4.33487 4.41055 4.47634 4.54885 4.61917 4.63151 4.64588 4.67544 4.75694 4.81753 4.84432 4.84939 4.87237 4.95889 4.99497 5.03374 5.06569 5.14699 5.19861 5.21511 5.27048 5.31827 5.36248 5.47917 5.52134 5.55445 5.69027 5.72433 5.90882 6.15382 6.17301 6.57513 6.95062 7.15568 7.66520 8.08110 9.06844 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.002131 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.288542 B =13135.483021 C =13420.832314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.091 4.091 7 C 0.530 3.470 8 O -0.583 6.583 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.112 4.112 12 C -0.078 4.078 13 C 0.122 3.878 14 C -0.091 4.091 15 C -0.125 4.125 16 C 0.118 3.882 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.060 0.940 20 C -0.034 4.034 21 N -0.955 5.955 22 Si 0.939 3.061 23 H -0.278 1.278 24 H -0.316 1.316 25 H -0.266 1.266 26 C 0.162 3.838 27 C -0.116 4.116 28 C -0.132 4.132 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.047 0.953 48 H 0.259 0.741 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.128 0.872 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.313 -3.112 -5.392 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.130 4.130 7 C 0.321 3.679 8 O -0.463 6.463 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.150 4.150 12 C -0.080 4.080 13 C -0.001 4.001 14 C -0.128 4.128 15 C -0.164 4.164 16 C -0.007 4.007 17 N -0.336 5.336 18 C -0.364 4.364 19 H 0.078 0.922 20 C -0.229 4.229 21 N -0.602 5.602 22 Si 0.770 3.230 23 H -0.205 1.205 24 H -0.245 1.245 25 H -0.191 1.191 26 C 0.037 3.963 27 C -0.134 4.134 28 C -0.150 4.150 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.045 0.955 51 H 0.146 0.854 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.682 -3.094 -4.952 27.313 hybrid contribution 1.259 -0.012 1.005 1.611 sum -25.422 -3.106 -3.948 25.914 Atomic orbital electron populations 1.20822 0.89486 1.03409 1.03105 1.20288 0.97523 0.93102 0.99069 1.21261 0.94083 0.98486 1.01176 1.21214 0.94900 0.97783 0.99638 1.19482 0.94287 0.93901 1.00997 1.20680 0.92460 1.07278 0.92555 1.20738 0.79878 0.75112 0.92166 1.90700 1.55389 1.52174 1.48025 1.48988 1.04941 1.72318 1.08859 1.22769 0.86046 1.00525 0.92596 1.22610 0.99256 0.99596 0.93552 1.21430 0.93134 0.96556 0.96909 1.21896 0.91892 1.00657 0.85702 1.21376 0.96664 0.95360 0.99417 1.21920 0.94810 0.97889 1.01804 1.21379 0.98003 0.86668 0.94602 1.44416 1.10237 1.20214 1.58738 1.18832 0.85235 1.25749 1.06575 0.92203 1.25813 0.95820 1.00962 1.00284 1.69948 1.00758 1.54829 1.34615 0.86029 0.75811 0.77628 0.83567 1.20506 1.24544 1.19051 1.20996 0.83446 0.93582 0.98297 1.21214 0.94879 0.97757 0.99598 1.21267 0.94098 0.98472 1.01144 0.90091 0.90943 0.90978 0.84595 0.85508 0.85930 0.85778 0.90443 0.87293 0.90886 0.90511 0.91334 0.91758 0.92035 0.91024 0.90552 0.91983 0.95596 0.93485 0.93193 0.92234 0.95490 0.85402 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 4 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 5 C -0.09 -1.79 4.37 -19.86 -0.09 -1.87 16 6 C -0.09 -1.58 4.77 29.10 0.14 -1.44 16 7 C 0.53 13.46 7.89 87.66 0.69 14.15 16 8 O -0.58 -19.85 16.38 -3.05 -0.05 -19.90 16 9 N -0.62 -14.82 3.30 -809.55 -2.67 -17.49 16 10 C 0.10 2.11 6.95 86.75 0.60 2.71 16 11 C -0.11 -2.92 5.00 31.69 0.16 -2.76 16 12 C -0.08 -2.19 0.63 -51.89 -0.03 -2.22 16 13 C 0.12 3.23 6.28 86.34 0.54 3.77 16 14 C -0.09 -2.45 4.33 30.47 0.13 -2.32 16 15 C -0.13 -3.89 5.89 30.70 0.18 -3.71 16 16 C 0.12 4.76 4.19 86.36 0.36 5.12 16 17 N -0.61 -26.70 2.28 -699.85 -1.59 -28.30 16 18 C -0.23 -12.47 10.03 84.04 0.84 -11.63 16 19 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 20 C -0.03 -1.93 5.23 84.86 0.44 -1.49 16 21 N -0.95 -58.35 13.97 21.65 0.30 -58.05 16 22 Si 0.94 45.90 24.36 68.60 1.67 47.57 16 23 H -0.28 -12.91 6.62 99.48 0.66 -12.25 16 24 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 25 H -0.27 -12.56 6.63 99.48 0.66 -11.90 16 26 C 0.16 5.73 4.88 86.16 0.42 6.15 16 27 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16 28 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.12 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.12 1.60 7.85 -2.39 -0.02 1.58 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 1.57 7.24 -2.39 -0.02 1.55 16 38 H 0.07 2.40 7.48 -2.39 -0.02 2.38 16 39 H 0.08 1.85 7.62 -2.39 -0.02 1.83 16 40 H 0.07 1.91 7.60 -2.39 -0.02 1.89 16 41 H 0.06 1.73 7.67 -2.39 -0.02 1.72 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.99 7.13 -2.38 -0.02 1.97 16 46 H 0.03 1.04 7.10 -2.39 -0.02 1.02 16 47 H 0.05 2.12 4.47 -2.38 -0.01 2.11 16 48 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 49 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 50 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 51 H 0.13 2.19 8.06 -2.92 -0.02 2.17 16 52 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -70.74 399.58 4.31 -66.43 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.79 Total: 16.42 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.86 Total: -6.69 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.96 Total: -103.83 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -70.74 4.31 -66.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040281201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.130 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds