Wall clock time and date at job start Wed Apr 1 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00411 * 2 1 4 4 C 1.38226 * 120.00223 * 179.80835 * 3 2 1 5 5 C 1.38244 * 119.99896 * 0.41903 * 4 3 2 6 6 C 1.50701 * 119.99932 * 179.79211 * 5 4 3 7 7 C 1.50704 * 109.46832 * 270.01934 * 6 5 4 8 8 O 1.21284 * 120.00243 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.47492 * 125.65916 * 359.69306 * 9 7 6 11 11 C 1.55258 * 104.78382 * 155.91103 * 10 9 7 12 12 C 1.54508 * 101.42356 * 36.65669 * 11 10 9 13 13 C 1.47196 * 125.66221 * 179.97438 * 9 7 6 14 14 C 1.52239 * 110.24127 * 206.41418 * 12 11 10 15 15 C 1.53169 * 109.64671 * 297.11249 * 14 12 11 16 16 C 1.53183 * 109.28151 * 299.83618 * 15 14 12 17 17 N 1.46942 * 108.93048 * 55.20788 * 16 15 14 18 18 C 1.36942 * 120.69994 * 125.86268 * 17 16 15 19 19 H 1.07999 * 120.00315 * 332.79477 * 18 17 16 20 20 C 1.38816 * 119.99316 * 152.79690 * 18 17 16 21 21 N 1.31620 * 119.99634 * 159.25386 * 20 18 17 22 22 Si 1.86799 * 120.00253 * 339.24859 * 20 18 17 23 23 H 1.48498 * 109.46731 * 92.52728 * 22 20 18 24 24 H 1.48500 * 109.47233 * 212.52425 * 22 20 18 25 25 H 1.48490 * 109.47250 * 332.52705 * 22 20 18 26 26 C 1.47074 * 118.59099 * 305.83950 * 17 16 15 27 27 C 1.38234 * 119.99992 * 359.80712 * 5 4 3 28 28 C 1.38237 * 119.99889 * 0.02562 * 27 5 4 29 29 H 1.09003 * 109.47199 * 269.73049 * 1 2 3 30 30 H 1.09000 * 109.47476 * 149.72894 * 1 2 3 31 31 H 1.09005 * 109.46737 * 29.72870 * 1 2 3 32 32 H 1.07995 * 119.99356 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.00186 * 180.20566 * 4 3 2 34 34 H 1.08993 * 109.47112 * 30.01572 * 6 5 4 35 35 H 1.08994 * 109.46997 * 150.02120 * 6 5 4 36 36 H 1.09003 * 110.34883 * 274.86266 * 10 9 7 37 37 H 1.08993 * 110.35236 * 37.15138 * 10 9 7 38 38 H 1.08995 * 111.21722 * 278.56585 * 11 10 9 39 39 H 1.08993 * 110.94236 * 154.63233 * 11 10 9 40 40 H 1.08993 * 109.91121 * 300.86463 * 13 9 7 41 41 H 1.08997 * 109.90844 * 62.13826 * 13 9 7 42 42 H 1.08994 * 109.44533 * 57.16877 * 14 12 11 43 43 H 1.08998 * 109.44139 * 177.06291 * 14 12 11 44 44 H 1.09003 * 109.50408 * 179.89132 * 15 14 12 45 45 H 1.09001 * 109.53694 * 59.79784 * 15 14 12 46 46 H 1.08994 * 109.56085 * 295.37507 * 16 15 14 47 47 H 1.08999 * 109.56244 * 175.04675 * 16 15 14 48 48 H 0.96999 * 120.00509 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.58413 * 292.66810 * 26 17 16 50 50 H 1.08997 * 109.57908 * 172.27006 * 26 17 16 51 51 H 1.07998 * 119.99899 * 179.97438 * 27 5 4 52 52 H 1.07997 * 119.99870 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0040 5 6 4.2717 -0.0002 -0.0007 6 6 5.7787 -0.0002 -0.0011 7 6 6.2806 0.0057 -1.4221 8 8 5.4922 0.0091 -2.3438 9 7 7.6056 0.0062 -1.6688 10 6 8.6702 0.0077 -0.6480 11 6 9.9050 -0.6050 -1.3625 12 6 9.7513 -0.0283 -2.7876 13 6 8.2304 0.0111 -3.0015 14 6 10.4152 -0.9485 -3.8026 15 6 11.9188 -1.0266 -3.5208 16 6 12.5276 0.3747 -3.6317 17 7 11.8035 1.2818 -2.7307 18 6 12.4765 2.0246 -1.7975 19 1 13.4175 1.6714 -1.4025 20 6 11.9490 3.2316 -1.3595 21 7 12.3412 3.7433 -0.2120 22 14 10.6827 4.1295 -2.3985 23 1 9.3181 3.7254 -1.9745 24 1 10.8434 5.5948 -2.2181 25 1 10.8798 3.7823 -3.8287 26 6 10.3408 1.3755 -2.8526 27 6 3.5805 -1.1973 -0.0055 28 6 2.1981 -1.1972 -0.0060 29 1 -0.3634 -0.0048 1.0277 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3633 0.8925 -0.5096 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1323 0.0074 34 1 6.1422 0.8876 0.5162 35 1 6.1421 -0.8923 0.5089 36 1 8.8833 1.0265 -0.3241 37 1 8.3805 -0.6088 0.2028 38 1 9.8541 -1.6937 -1.3738 39 1 10.8314 -0.2639 -0.9006 40 1 7.9116 -0.8662 -3.5642 41 1 7.9546 0.9193 -3.5374 42 1 9.9800 -1.9450 -3.7282 43 1 10.2543 -0.5570 -4.8070 44 1 12.3914 -1.6874 -4.2475 45 1 12.0815 -1.4154 -2.5156 46 1 12.4380 0.7313 -4.6578 47 1 13.5790 0.3394 -3.3465 48 1 11.9729 4.5869 0.0940 49 1 10.0824 1.8364 -3.8058 50 1 9.9439 1.9765 -2.0345 51 1 4.1204 -2.1326 -0.0096 52 1 1.6581 -2.1324 -0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040281203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:24 Heat of formation + Delta-G solvation = 6.503591 kcal Electronic energy + Delta-G solvation = -30584.341098 eV Core-core repulsion = 26741.658297 eV Total energy + Delta-G solvation = -3842.682801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.44499 -39.54785 -38.32882 -35.90642 -33.89415 -33.22032 -31.57102 -31.00163 -30.73538 -29.77389 -29.25670 -26.40626 -25.43480 -24.84010 -23.00419 -22.81473 -22.45293 -21.15879 -20.50534 -19.17066 -18.44655 -16.97756 -16.69987 -16.33941 -16.04834 -15.59733 -15.21696 -15.15692 -14.91453 -14.31203 -14.15343 -13.89473 -13.84273 -13.63650 -13.50488 -13.10339 -13.00438 -12.87341 -12.58012 -12.50869 -12.45684 -12.15324 -12.04403 -11.90867 -11.79443 -11.72007 -11.28668 -11.21591 -11.04266 -11.02117 -10.67994 -10.54878 -10.43067 -10.02295 -9.91164 -9.72302 -9.69114 -9.45065 -8.97442 -8.66244 -8.57452 -8.45739 -7.02591 -6.01182 -3.36364 1.21989 1.35568 2.75980 3.11717 3.27562 3.45525 3.47561 3.71366 4.46737 4.54789 4.59061 4.66656 4.79871 4.83918 4.88969 4.92508 4.98121 5.05644 5.14850 5.29978 5.34162 5.35618 5.37885 5.43421 5.45052 5.47500 5.60353 5.60794 5.62003 5.64628 5.81490 5.81621 5.98108 5.98961 5.99294 6.03350 6.14245 6.26535 6.27937 6.29813 6.32689 6.34116 6.49140 6.52187 6.53143 6.59087 6.61942 6.67916 6.73975 6.90769 6.93271 7.67885 7.89857 8.27127 8.29687 8.88286 9.66463 10.05158 11.14550 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002859 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.779590 B = 9790.270471 C =10767.083900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.066 4.066 6 C -0.100 4.100 7 C 0.528 3.472 8 O -0.541 6.541 9 N -0.616 5.616 10 C 0.095 3.905 11 C -0.113 4.113 12 C -0.085 4.085 13 C 0.119 3.881 14 C -0.093 4.093 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.603 5.603 18 C -0.257 4.257 19 H 0.087 0.913 20 C 0.027 3.973 21 N -0.906 5.906 22 Si 0.875 3.125 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.141 3.859 27 C -0.101 4.101 28 C -0.121 4.121 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.021 0.979 47 H 0.062 0.938 48 H 0.263 0.737 49 H 0.025 0.975 50 H 0.075 0.925 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 -11.185 1.133 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.066 4.066 6 C -0.139 4.139 7 C 0.316 3.684 8 O -0.418 6.418 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.150 4.150 12 C -0.088 4.088 13 C -0.004 4.004 14 C -0.131 4.131 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.326 5.326 18 C -0.385 4.385 19 H 0.105 0.895 20 C -0.172 4.172 21 N -0.549 5.549 22 Si 0.705 3.295 23 H -0.217 1.217 24 H -0.231 1.231 25 H -0.196 1.196 26 C 0.015 3.985 27 C -0.119 4.119 28 C -0.139 4.139 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.043 0.957 50 H 0.093 0.907 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.179 -11.023 0.778 19.593 hybrid contribution -0.644 0.752 -0.559 1.136 sum -16.823 -10.271 0.219 19.712 Atomic orbital electron populations 1.20774 0.91388 1.02673 1.02100 1.19895 0.95934 0.93285 1.00062 1.20962 0.94027 0.97481 1.01291 1.20998 0.94259 0.97504 0.99103 1.19290 0.93632 0.93600 1.00119 1.20666 0.93006 1.05342 0.94927 1.20135 0.80560 0.76520 0.91161 1.90704 1.54438 1.50213 1.46442 1.48637 1.04963 1.72730 1.08634 1.22574 0.87230 1.01857 0.91067 1.22764 0.98446 0.99046 0.94789 1.21615 0.92053 0.99085 0.96009 1.21945 0.92443 1.01610 0.84413 1.21263 0.96138 0.97757 0.97972 1.22023 0.94917 0.99033 1.01352 1.20948 0.95724 0.88505 0.92803 1.44368 1.00212 1.48619 1.39377 1.18902 1.06563 0.99181 1.13871 0.89541 1.25242 0.98264 0.96840 0.96895 1.69824 1.45726 1.20737 1.18635 0.87094 0.81115 0.78913 0.82368 1.21693 1.23109 1.19605 1.21245 0.85065 0.92656 0.99529 1.20942 0.94204 0.97318 0.99479 1.20942 0.94017 0.97417 1.01513 0.91330 0.91674 0.91649 0.86187 0.86171 0.87882 0.88023 0.90533 0.90904 0.91576 0.87629 0.91580 0.91800 0.92749 0.92374 0.92667 0.91711 0.96071 0.91904 0.92759 0.95734 0.90698 0.86297 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.36 9.70 -39.59 -0.38 -1.74 16 4 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.07 -0.84 4.37 -104.62 -0.46 -1.30 16 6 C -0.10 -1.21 4.84 -29.03 -0.14 -1.35 16 7 C 0.53 8.37 7.84 -10.99 -0.09 8.29 16 8 O -0.54 -10.44 16.36 5.55 0.09 -10.35 16 9 N -0.62 -9.65 3.33 -170.53 -0.57 -10.22 16 10 C 0.10 1.38 6.38 -2.30 -0.01 1.37 16 11 C -0.11 -1.72 4.91 -24.74 -0.12 -1.84 16 12 C -0.09 -1.40 0.56 -154.08 -0.09 -1.48 16 13 C 0.12 1.93 6.05 -3.33 -0.02 1.91 16 14 C -0.09 -1.35 4.53 -27.03 -0.12 -1.48 16 15 C -0.13 -1.99 5.90 -26.55 -0.16 -2.15 16 16 C 0.15 2.68 6.49 -3.71 -0.02 2.66 16 17 N -0.60 -13.29 2.30 -172.68 -0.40 -13.69 16 18 C -0.26 -6.72 10.04 -15.06 -0.15 -6.88 16 19 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 20 C 0.03 0.74 5.23 -17.43 -0.09 0.64 16 21 N -0.91 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.87 21.97 24.33 -169.99 -4.14 17.83 16 23 H -0.29 -7.09 6.61 56.52 0.37 -6.72 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 26 C 0.14 2.91 2.74 -4.04 -0.01 2.90 16 27 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 28 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 35 H 0.10 0.99 7.80 -51.93 -0.40 0.59 16 36 H 0.08 1.26 7.64 -51.93 -0.40 0.86 16 37 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 38 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.11 1.88 7.58 -51.93 -0.39 1.49 16 40 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 41 H 0.06 1.13 7.80 -51.93 -0.41 0.72 16 42 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.02 0.53 6.98 -51.93 -0.36 0.17 16 50 H 0.08 1.71 3.76 -51.93 -0.20 1.52 16 51 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -31.85 398.85 -10.33 -42.18 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.83 Total: 1.55 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.27 Total: -7.49 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.19 Total: -49.74 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.85 -10.33 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040281203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.683 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds