Wall clock time and date at job start Wed Apr 1 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00411 * 2 1 4 4 C 1.38226 * 120.00223 * 179.80835 * 3 2 1 5 5 C 1.38244 * 119.99896 * 0.41903 * 4 3 2 6 6 C 1.50701 * 119.99932 * 179.79211 * 5 4 3 7 7 C 1.50704 * 109.46832 * 270.01934 * 6 5 4 8 8 O 1.21284 * 120.00243 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.47492 * 125.65916 * 359.69306 * 9 7 6 11 11 C 1.55258 * 104.78382 * 155.91103 * 10 9 7 12 12 C 1.54508 * 101.42356 * 36.65669 * 11 10 9 13 13 C 1.47196 * 125.66221 * 179.97438 * 9 7 6 14 14 C 1.52239 * 110.24127 * 206.41418 * 12 11 10 15 15 C 1.53169 * 109.64671 * 297.11249 * 14 12 11 16 16 C 1.53183 * 109.28151 * 299.83618 * 15 14 12 17 17 N 1.46942 * 108.93048 * 55.20788 * 16 15 14 18 18 C 1.36942 * 120.69994 * 125.86268 * 17 16 15 19 19 H 1.07999 * 120.00315 * 332.79477 * 18 17 16 20 20 C 1.38816 * 119.99316 * 152.79690 * 18 17 16 21 21 N 1.31620 * 119.99634 * 159.25386 * 20 18 17 22 22 Si 1.86799 * 120.00253 * 339.24859 * 20 18 17 23 23 H 1.48498 * 109.46731 * 92.52728 * 22 20 18 24 24 H 1.48500 * 109.47233 * 212.52425 * 22 20 18 25 25 H 1.48490 * 109.47250 * 332.52705 * 22 20 18 26 26 C 1.47074 * 118.59099 * 305.83950 * 17 16 15 27 27 C 1.38234 * 119.99992 * 359.80712 * 5 4 3 28 28 C 1.38237 * 119.99889 * 0.02562 * 27 5 4 29 29 H 1.09003 * 109.47199 * 269.73049 * 1 2 3 30 30 H 1.09000 * 109.47476 * 149.72894 * 1 2 3 31 31 H 1.09005 * 109.46737 * 29.72870 * 1 2 3 32 32 H 1.07995 * 119.99356 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.00186 * 180.20566 * 4 3 2 34 34 H 1.08993 * 109.47112 * 30.01572 * 6 5 4 35 35 H 1.08994 * 109.46997 * 150.02120 * 6 5 4 36 36 H 1.09003 * 110.34883 * 274.86266 * 10 9 7 37 37 H 1.08993 * 110.35236 * 37.15138 * 10 9 7 38 38 H 1.08995 * 111.21722 * 278.56585 * 11 10 9 39 39 H 1.08993 * 110.94236 * 154.63233 * 11 10 9 40 40 H 1.08993 * 109.91121 * 300.86463 * 13 9 7 41 41 H 1.08997 * 109.90844 * 62.13826 * 13 9 7 42 42 H 1.08994 * 109.44533 * 57.16877 * 14 12 11 43 43 H 1.08998 * 109.44139 * 177.06291 * 14 12 11 44 44 H 1.09003 * 109.50408 * 179.89132 * 15 14 12 45 45 H 1.09001 * 109.53694 * 59.79784 * 15 14 12 46 46 H 1.08994 * 109.56085 * 295.37507 * 16 15 14 47 47 H 1.08999 * 109.56244 * 175.04675 * 16 15 14 48 48 H 0.96999 * 120.00509 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.58413 * 292.66810 * 26 17 16 50 50 H 1.08997 * 109.57908 * 172.27006 * 26 17 16 51 51 H 1.07998 * 119.99899 * 179.97438 * 27 5 4 52 52 H 1.07997 * 119.99870 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0040 5 6 4.2717 -0.0002 -0.0007 6 6 5.7787 -0.0002 -0.0011 7 6 6.2806 0.0057 -1.4221 8 8 5.4922 0.0091 -2.3438 9 7 7.6056 0.0062 -1.6688 10 6 8.6702 0.0077 -0.6480 11 6 9.9050 -0.6050 -1.3625 12 6 9.7513 -0.0283 -2.7876 13 6 8.2304 0.0111 -3.0015 14 6 10.4152 -0.9485 -3.8026 15 6 11.9188 -1.0266 -3.5208 16 6 12.5276 0.3747 -3.6317 17 7 11.8035 1.2818 -2.7307 18 6 12.4765 2.0246 -1.7975 19 1 13.4175 1.6714 -1.4025 20 6 11.9490 3.2316 -1.3595 21 7 12.3412 3.7433 -0.2120 22 14 10.6827 4.1295 -2.3985 23 1 9.3181 3.7254 -1.9745 24 1 10.8434 5.5948 -2.2181 25 1 10.8798 3.7823 -3.8287 26 6 10.3408 1.3755 -2.8526 27 6 3.5805 -1.1973 -0.0055 28 6 2.1981 -1.1972 -0.0060 29 1 -0.3634 -0.0048 1.0277 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3633 0.8925 -0.5096 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1323 0.0074 34 1 6.1422 0.8876 0.5162 35 1 6.1421 -0.8923 0.5089 36 1 8.8833 1.0265 -0.3241 37 1 8.3805 -0.6088 0.2028 38 1 9.8541 -1.6937 -1.3738 39 1 10.8314 -0.2639 -0.9006 40 1 7.9116 -0.8662 -3.5642 41 1 7.9546 0.9193 -3.5374 42 1 9.9800 -1.9450 -3.7282 43 1 10.2543 -0.5570 -4.8070 44 1 12.3914 -1.6874 -4.2475 45 1 12.0815 -1.4154 -2.5156 46 1 12.4380 0.7313 -4.6578 47 1 13.5790 0.3394 -3.3465 48 1 11.9729 4.5869 0.0940 49 1 10.0824 1.8364 -3.8058 50 1 9.9439 1.9765 -2.0345 51 1 4.1204 -2.1326 -0.0096 52 1 1.6581 -2.1324 -0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040281203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:22 Heat of formation + Delta-G solvation = -10.414197 kcal Electronic energy + Delta-G solvation = -30585.074708 eV Core-core repulsion = 26741.658297 eV Total energy + Delta-G solvation = -3843.416411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -41.69204 -40.56444 -39.53939 -37.36633 -34.98288 -34.72481 -33.10663 -32.37184 -31.83544 -30.72692 -30.46672 -27.59501 -27.21483 -25.88315 -24.38756 -23.86548 -23.65485 -22.31661 -21.71024 -20.39385 -19.92219 -18.57461 -18.10781 -17.54389 -17.12985 -16.95507 -16.49094 -16.15325 -15.99921 -15.82528 -15.46143 -15.42604 -15.08263 -14.59274 -14.53166 -14.51898 -14.31484 -13.95667 -13.88734 -13.67458 -13.64129 -13.48265 -13.35493 -13.18689 -12.79733 -12.74594 -12.72568 -12.60896 -12.37803 -12.10323 -12.03395 -11.87844 -11.83898 -11.66616 -11.39835 -11.29315 -11.12932 -10.95599 -10.65655 -9.83203 -9.73555 -9.42004 -8.90898 -8.17043 -5.45472 0.35921 0.49802 1.22730 1.35747 1.41196 1.54781 1.95908 2.37256 2.82378 3.01920 3.29009 3.50092 3.61537 3.68002 3.77408 3.86345 3.92121 4.07322 4.11787 4.20553 4.20861 4.26427 4.31406 4.35197 4.48257 4.49193 4.58481 4.59063 4.59941 4.63981 4.71854 4.74909 4.83134 4.83690 4.91206 4.94288 4.97575 5.00834 5.10450 5.17468 5.17627 5.18696 5.27349 5.32077 5.35644 5.41374 5.48054 5.60739 5.65410 5.68593 5.88641 6.11502 6.14832 6.46819 6.92472 7.07414 7.63741 8.06057 9.02727 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002859 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.779590 B = 9790.270471 C =10767.083900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.093 4.093 7 C 0.525 3.475 8 O -0.579 6.579 9 N -0.617 5.617 10 C 0.097 3.903 11 C -0.105 4.105 12 C -0.079 4.079 13 C 0.120 3.880 14 C -0.090 4.090 15 C -0.123 4.123 16 C 0.137 3.863 17 N -0.613 5.613 18 C -0.231 4.231 19 H 0.062 0.938 20 C -0.022 4.022 21 N -0.950 5.950 22 Si 0.925 3.075 23 H -0.287 1.287 24 H -0.314 1.314 25 H -0.270 1.270 26 C 0.141 3.859 27 C -0.112 4.112 28 C -0.129 4.129 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.260 0.740 49 H 0.015 0.985 50 H 0.048 0.952 51 H 0.133 0.867 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.318 -14.089 0.600 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.086 4.086 6 C -0.132 4.132 7 C 0.316 3.684 8 O -0.460 6.460 9 N -0.350 5.350 10 C -0.025 4.025 11 C -0.143 4.143 12 C -0.081 4.081 13 C -0.003 4.003 14 C -0.128 4.128 15 C -0.161 4.161 16 C 0.013 3.987 17 N -0.337 5.337 18 C -0.361 4.361 19 H 0.080 0.920 20 C -0.217 4.217 21 N -0.596 5.596 22 Si 0.757 3.243 23 H -0.214 1.214 24 H -0.243 1.243 25 H -0.195 1.195 26 C 0.016 3.984 27 C -0.130 4.130 28 C -0.147 4.147 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.032 0.968 50 H 0.066 0.934 51 H 0.151 0.849 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.787 -13.961 0.216 22.612 hybrid contribution -0.117 1.617 -0.437 1.679 sum -17.904 -12.343 -0.220 21.748 Atomic orbital electron populations 1.20824 0.89256 1.03488 1.03185 1.20298 0.97628 0.92963 0.98905 1.21238 0.93825 0.98689 1.01298 1.21186 0.95132 0.97663 1.00077 1.19448 0.93973 0.94060 1.01147 1.20693 0.92873 1.07040 0.92575 1.20781 0.80085 0.75294 0.92271 1.90680 1.55300 1.52020 1.47966 1.48732 1.05273 1.72395 1.08599 1.22584 0.86856 1.01121 0.91933 1.22689 0.97319 1.00717 0.93546 1.21469 0.92084 0.96736 0.97833 1.21886 0.92189 1.01267 0.84976 1.21289 0.95607 0.98665 0.97251 1.21909 0.95161 0.96696 1.02370 1.21182 0.95531 0.89945 0.92040 1.44486 1.01055 1.48690 1.39471 1.18852 1.05312 0.98736 1.13189 0.92001 1.25651 1.00377 0.97919 0.97747 1.69917 1.48084 1.21356 1.20284 0.86265 0.79763 0.77210 0.81097 1.21421 1.24289 1.19458 1.21159 0.84276 0.95256 0.97758 1.21215 0.94921 0.97565 0.99329 1.21298 0.93976 0.98533 1.00866 0.90002 0.90624 0.91105 0.84776 0.86464 0.87116 0.85158 0.93204 0.87161 0.88468 0.90401 0.90033 0.93942 0.89718 0.92036 0.89410 0.91851 0.95492 0.92415 0.93109 0.96763 0.93376 0.84890 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.74 16 2 C -0.10 -1.94 5.88 -19.87 -0.12 -2.05 16 3 C -0.13 -2.92 9.70 22.27 0.22 -2.71 16 4 C -0.12 -3.07 9.70 22.27 0.22 -2.85 16 5 C -0.09 -2.11 4.37 -19.86 -0.09 -2.20 16 6 C -0.09 -2.10 4.84 29.10 0.14 -1.96 16 7 C 0.53 16.06 7.84 87.66 0.69 16.75 16 8 O -0.58 -22.12 16.36 -3.04 -0.05 -22.17 16 9 N -0.62 -18.41 3.33 -811.84 -2.71 -21.11 16 10 C 0.10 2.66 6.38 86.96 0.55 3.21 16 11 C -0.10 -2.96 4.91 31.88 0.16 -2.81 16 12 C -0.08 -2.44 0.56 -51.91 -0.03 -2.47 16 13 C 0.12 3.72 6.05 86.46 0.52 4.24 16 14 C -0.09 -2.29 4.53 30.40 0.14 -2.15 16 15 C -0.12 -3.23 5.90 30.71 0.18 -3.04 16 16 C 0.14 4.84 6.49 86.36 0.56 5.40 16 17 N -0.61 -26.93 2.30 -700.24 -1.61 -28.54 16 18 C -0.23 -12.34 10.04 84.03 0.84 -11.50 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 20 C -0.02 -1.23 5.23 84.86 0.44 -0.79 16 21 N -0.95 -57.72 13.97 21.65 0.30 -57.42 16 22 Si 0.93 46.98 24.33 68.60 1.67 48.64 16 23 H -0.29 -14.21 6.61 99.48 0.66 -13.55 16 24 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 25 H -0.27 -13.40 6.64 99.48 0.66 -12.74 16 26 C 0.14 5.77 2.74 86.07 0.24 6.01 16 27 C -0.11 -2.48 9.70 22.27 0.22 -2.26 16 28 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 31 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 32 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.11 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.13 2.15 7.80 -2.39 -0.02 2.14 16 36 H 0.05 1.64 7.64 -2.39 -0.02 1.63 16 37 H 0.11 2.19 7.48 -2.39 -0.02 2.17 16 38 H 0.10 2.18 8.01 -2.39 -0.02 2.16 16 39 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 40 H 0.08 2.29 7.79 -2.39 -0.02 2.28 16 41 H 0.04 1.49 7.80 -2.39 -0.02 1.47 16 42 H 0.08 1.72 8.11 -2.39 -0.02 1.70 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.72 7.31 -2.39 -0.02 1.70 16 46 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 48 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 49 H 0.01 0.62 6.98 -2.39 -0.02 0.60 16 50 H 0.05 2.24 3.76 -2.39 -0.01 2.23 16 51 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 52 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -71.55 398.85 4.20 -67.35 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.79 Total: 17.53 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.81 Total: -4.29 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.02 Total: -107.07 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.67 Total: 48.64 kcal Total: -71.55 4.20 -67.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040281203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.934 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds