Wall clock time and date at job start Wed Apr 1 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00457 * 2 1 4 4 C 1.38207 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00090 * 0.26108 * 4 3 2 6 6 C 1.38219 * 120.00029 * 359.48510 * 5 4 3 7 7 C 1.50696 * 120.00161 * 180.25936 * 6 5 4 8 8 C 1.50696 * 109.47044 * 270.23457 * 7 6 5 9 9 O 1.21275 * 120.00126 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.47084 * 125.62750 * 0.02562 * 10 8 7 12 12 C 1.54469 * 107.30417 * 180.98201 * 11 10 8 13 13 C 1.54352 * 102.85585 * 21.47675 * 12 11 10 14 14 C 1.47579 * 125.62424 * 179.71706 * 10 8 7 15 15 C 1.52072 * 110.60980 * 83.54089 * 13 12 11 16 16 C 1.53182 * 109.67830 * 64.18789 * 15 13 12 17 17 C 1.53187 * 109.27933 * 59.96294 * 16 15 13 18 18 N 1.46941 * 108.92809 * 304.67595 * 17 16 15 19 19 C 1.36932 * 120.71385 * 234.27689 * 18 17 16 20 20 H 1.08003 * 119.99751 * 27.16873 * 19 18 17 21 21 C 1.38813 * 120.00187 * 207.15987 * 19 18 17 22 22 N 1.31621 * 119.99912 * 17.17224 * 21 19 18 23 23 Si 1.86794 * 119.99993 * 197.16992 * 21 19 18 24 24 H 1.48494 * 109.47294 * 60.00214 * 23 21 19 25 25 H 1.48503 * 109.47180 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47577 * 300.00174 * 23 21 19 27 27 C 1.47109 * 118.57252 * 54.26177 * 18 17 16 28 28 C 1.38214 * 119.99525 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47103 * 90.00096 * 1 2 3 30 30 H 1.09000 * 109.47708 * 209.99898 * 1 2 3 31 31 H 1.09005 * 109.46822 * 330.00059 * 1 2 3 32 32 H 1.08007 * 119.99250 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.99678 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.00258 * 179.71876 * 5 4 3 35 35 H 1.09004 * 109.47296 * 30.23105 * 7 6 5 36 36 H 1.09001 * 109.47159 * 150.23041 * 7 6 5 37 37 H 1.08997 * 109.87861 * 300.40902 * 11 10 8 38 38 H 1.09000 * 109.87476 * 61.55564 * 11 10 8 39 39 H 1.08998 * 110.73868 * 139.82281 * 12 11 10 40 40 H 1.09002 * 110.73232 * 263.13767 * 12 11 10 41 41 H 1.09008 * 110.37829 * 275.54048 * 14 10 8 42 42 H 1.08998 * 110.37997 * 37.89597 * 14 10 8 43 43 H 1.09003 * 109.43464 * 184.25467 * 15 13 12 44 44 H 1.08999 * 109.43924 * 304.16550 * 15 13 12 45 45 H 1.09001 * 109.50209 * 179.89919 * 16 15 13 46 46 H 1.08998 * 109.50458 * 299.98449 * 16 15 13 47 47 H 1.09003 * 109.56239 * 64.51538 * 17 16 15 48 48 H 1.08997 * 109.56221 * 184.73144 * 17 16 15 49 49 H 0.96995 * 119.99879 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.57401 * 187.94046 * 27 18 17 51 51 H 1.08995 * 109.58022 * 67.55106 * 27 18 17 52 52 H 1.07996 * 120.00485 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0044 6 6 3.5805 -1.1971 0.0009 7 6 4.3340 -2.5022 0.0015 8 6 4.5852 -2.9378 -1.4191 9 8 4.1908 -2.2559 -2.3412 10 7 5.2473 -4.0857 -1.6650 11 6 5.7766 -5.0047 -0.6458 12 6 6.4747 -6.1640 -1.3905 13 6 6.7731 -5.5520 -2.7757 14 6 5.5551 -4.6313 -3.0012 15 6 8.0640 -4.7489 -2.7393 16 6 9.2432 -5.6810 -2.4443 17 6 9.3340 -6.7449 -3.5426 18 7 8.0434 -7.4406 -3.6402 19 6 7.9755 -8.8051 -3.5472 20 1 8.7256 -9.3463 -2.9896 21 6 6.9427 -9.4927 -4.1695 22 7 6.2340 -8.9053 -5.1104 23 14 6.5585 -11.2516 -3.6717 24 1 6.1991 -11.2912 -2.2314 25 1 5.4204 -11.7576 -4.4804 26 1 7.7508 -12.1047 -3.9079 27 6 6.8257 -6.6396 -3.8395 28 6 2.1980 -1.1970 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6583 2.1326 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.3517 -0.0002 -0.0086 35 1 5.2864 -2.3718 0.5153 36 1 3.7449 -3.2617 0.5156 37 1 6.4960 -4.4832 -0.0145 38 1 4.9600 -5.3934 -0.0374 39 1 7.3987 -6.4460 -0.8859 40 1 5.8071 -7.0208 -1.4828 41 1 4.7088 -5.2033 -3.3819 42 1 5.8109 -3.8263 -3.6902 43 1 8.2170 -4.2643 -3.7036 44 1 7.9976 -3.9908 -1.9589 45 1 10.1670 -5.1028 -2.4206 46 1 9.0920 -6.1651 -1.4795 47 1 9.5643 -6.2675 -4.4951 48 1 10.1180 -7.4601 -3.2940 49 1 5.5125 -9.3859 -5.5455 50 1 5.9484 -7.2804 -3.7503 51 1 6.8471 -6.1823 -4.8286 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040364228.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:31 Heat of formation + Delta-G solvation = 1.933397 kcal Electronic energy + Delta-G solvation = -30313.730809 eV Core-core repulsion = 26470.849830 eV Total energy + Delta-G solvation = -3842.880979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.37896 -39.48860 -38.17765 -35.77271 -33.63419 -33.04116 -32.18231 -31.31784 -29.98564 -29.31505 -28.18807 -26.99556 -25.33772 -25.26215 -22.95840 -22.26879 -22.08460 -21.15795 -20.49916 -19.06339 -18.04470 -16.93263 -16.63000 -16.60967 -16.11023 -15.48214 -15.24988 -14.77440 -14.69004 -14.25994 -14.06626 -13.85357 -13.57143 -13.39113 -13.26579 -13.15853 -13.05169 -12.76966 -12.56670 -12.47476 -12.39382 -12.08417 -12.01294 -11.93941 -11.66272 -11.23935 -11.15164 -11.10551 -11.00150 -10.75031 -10.58191 -10.43862 -10.21656 -10.08364 -9.87093 -9.75698 -9.56521 -9.44945 -8.87649 -8.68357 -8.50072 -8.39499 -6.70040 -5.81755 -3.22996 1.22478 1.30548 2.77274 3.14781 3.35582 3.42429 3.42476 3.70010 4.46153 4.50389 4.63048 4.67421 4.75877 4.96005 4.98520 5.05434 5.09194 5.14782 5.27157 5.34375 5.37814 5.38281 5.41719 5.46293 5.51795 5.53886 5.61496 5.63624 5.67379 5.81301 5.94658 6.00399 6.03133 6.05595 6.17395 6.20090 6.33455 6.33797 6.35898 6.43620 6.44990 6.49695 6.50322 6.66123 6.73948 6.79075 6.88605 6.91107 6.99317 7.29273 7.58365 7.72769 7.76431 8.32203 8.40877 9.17738 9.81486 10.38931 11.26932 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002438 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.179962 B =11480.967701 C =12282.915857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.058 4.058 7 C -0.099 4.099 8 C 0.526 3.474 9 O -0.538 6.538 10 N -0.614 5.614 11 C 0.098 3.902 12 C -0.108 4.108 13 C -0.090 4.090 14 C 0.118 3.882 15 C -0.091 4.091 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.589 5.589 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.189 3.811 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.255 0.745 50 H 0.091 0.909 51 H 0.020 0.980 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 15.955 13.538 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.139 4.139 8 C 0.314 3.686 9 O -0.415 6.415 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.145 4.145 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.129 4.129 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.063 3.937 28 C -0.123 4.123 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.038 0.962 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.565 16.286 12.946 21.536 hybrid contribution -0.160 -0.972 0.178 1.001 sum -5.725 15.314 13.124 20.966 Atomic orbital electron populations 1.20784 0.91283 1.02546 1.02404 1.19859 0.95989 0.93113 0.99803 1.20984 0.94279 0.97345 1.01569 1.21056 0.94294 0.97805 1.00264 1.20954 0.99677 0.91998 1.00222 1.19295 0.93526 0.93695 0.99326 1.20661 1.02023 0.95989 0.95186 1.20080 0.77773 0.79732 0.90990 1.90718 1.51030 1.53448 1.46353 1.48655 1.55666 1.21542 1.08947 1.22205 0.97565 0.91473 0.91264 1.22529 1.00806 0.95918 0.95290 1.21880 0.92891 0.96550 0.97968 1.22279 0.97624 0.96625 0.83860 1.21163 0.94425 0.96781 1.00491 1.22076 0.96555 0.97947 1.00771 1.20907 0.89482 0.93246 0.94621 1.44002 0.99899 1.02425 1.84754 1.19104 1.11121 0.81860 1.25874 0.91718 1.25012 1.00745 0.97648 0.96184 1.70012 1.23289 1.37264 1.24120 0.86408 0.77728 0.84858 0.78013 1.21059 1.21685 1.20937 1.20553 0.91874 0.89597 0.91687 1.20851 0.93382 0.97622 1.00456 0.91147 0.91601 0.91681 0.86332 0.86152 0.86338 0.88163 0.88159 0.91969 0.91933 0.89802 0.90339 0.91220 0.90943 0.92660 0.93660 0.93244 0.92162 0.96565 0.92941 0.93534 0.89129 0.96213 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 4 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 5 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 6 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 7 C -0.10 -1.09 5.02 -29.04 -0.15 -1.23 16 8 C 0.53 7.94 7.84 -10.99 -0.09 7.86 16 9 O -0.54 -10.26 16.30 5.56 0.09 -10.17 16 10 N -0.61 -9.11 3.32 -170.61 -0.57 -9.68 16 11 C 0.10 1.24 6.12 -2.95 -0.02 1.22 16 12 C -0.11 -1.69 5.67 -25.25 -0.14 -1.83 16 13 C -0.09 -1.57 0.55 -153.96 -0.08 -1.66 16 14 C 0.12 2.02 5.83 -2.75 -0.02 2.00 16 15 C -0.09 -1.47 4.69 -27.11 -0.13 -1.60 16 16 C -0.13 -2.19 5.91 -26.54 -0.16 -2.34 16 17 C 0.14 2.87 6.49 -3.70 -0.02 2.85 16 18 N -0.59 -13.84 2.89 -172.75 -0.50 -14.33 16 19 C -0.25 -6.50 9.60 -15.06 -0.14 -6.65 16 20 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.35 11.17 55.49 0.62 -24.73 16 23 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.19 4.22 3.96 -4.10 -0.02 4.20 16 28 C -0.11 -1.23 9.36 -39.58 -0.37 -1.60 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.31 6.09 -51.93 -0.32 0.99 16 40 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 41 H 0.07 1.26 8.01 -51.92 -0.42 0.84 16 42 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.97 6.31 -51.93 -0.33 0.64 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.03 7.94 -51.93 -0.41 0.62 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.09 2.27 5.90 -51.93 -0.31 1.96 16 51 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -30.93 405.92 -11.45 -42.38 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.89 Total: 1.38 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.30 Total: -6.95 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.44 Total: -48.75 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.93 -11.45 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040364228.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.317 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds