Wall clock time and date at job start Wed Apr 1 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00457 * 2 1 4 4 C 1.38207 * 120.00087 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00090 * 0.26108 * 4 3 2 6 6 C 1.38219 * 120.00029 * 359.48510 * 5 4 3 7 7 C 1.50696 * 120.00161 * 180.25936 * 6 5 4 8 8 C 1.50696 * 109.47044 * 270.23457 * 7 6 5 9 9 O 1.21275 * 120.00126 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.47084 * 125.62750 * 0.02562 * 10 8 7 12 12 C 1.54469 * 107.30417 * 180.98201 * 11 10 8 13 13 C 1.54352 * 102.85585 * 21.47675 * 12 11 10 14 14 C 1.47579 * 125.62424 * 179.71706 * 10 8 7 15 15 C 1.52072 * 110.60980 * 83.54089 * 13 12 11 16 16 C 1.53182 * 109.67830 * 64.18789 * 15 13 12 17 17 C 1.53187 * 109.27933 * 59.96294 * 16 15 13 18 18 N 1.46941 * 108.92809 * 304.67595 * 17 16 15 19 19 C 1.36932 * 120.71385 * 234.27689 * 18 17 16 20 20 H 1.08003 * 119.99751 * 27.16873 * 19 18 17 21 21 C 1.38813 * 120.00187 * 207.15987 * 19 18 17 22 22 N 1.31621 * 119.99912 * 17.17224 * 21 19 18 23 23 Si 1.86794 * 119.99993 * 197.16992 * 21 19 18 24 24 H 1.48494 * 109.47294 * 60.00214 * 23 21 19 25 25 H 1.48503 * 109.47180 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47577 * 300.00174 * 23 21 19 27 27 C 1.47109 * 118.57252 * 54.26177 * 18 17 16 28 28 C 1.38214 * 119.99525 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47103 * 90.00096 * 1 2 3 30 30 H 1.09000 * 109.47708 * 209.99898 * 1 2 3 31 31 H 1.09005 * 109.46822 * 330.00059 * 1 2 3 32 32 H 1.08007 * 119.99250 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.99678 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.00258 * 179.71876 * 5 4 3 35 35 H 1.09004 * 109.47296 * 30.23105 * 7 6 5 36 36 H 1.09001 * 109.47159 * 150.23041 * 7 6 5 37 37 H 1.08997 * 109.87861 * 300.40902 * 11 10 8 38 38 H 1.09000 * 109.87476 * 61.55564 * 11 10 8 39 39 H 1.08998 * 110.73868 * 139.82281 * 12 11 10 40 40 H 1.09002 * 110.73232 * 263.13767 * 12 11 10 41 41 H 1.09008 * 110.37829 * 275.54048 * 14 10 8 42 42 H 1.08998 * 110.37997 * 37.89597 * 14 10 8 43 43 H 1.09003 * 109.43464 * 184.25467 * 15 13 12 44 44 H 1.08999 * 109.43924 * 304.16550 * 15 13 12 45 45 H 1.09001 * 109.50209 * 179.89919 * 16 15 13 46 46 H 1.08998 * 109.50458 * 299.98449 * 16 15 13 47 47 H 1.09003 * 109.56239 * 64.51538 * 17 16 15 48 48 H 1.08997 * 109.56221 * 184.73144 * 17 16 15 49 49 H 0.96995 * 119.99879 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.57401 * 187.94046 * 27 18 17 51 51 H 1.08995 * 109.58022 * 67.55106 * 27 18 17 52 52 H 1.07996 * 120.00485 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0044 6 6 3.5805 -1.1971 0.0009 7 6 4.3340 -2.5022 0.0015 8 6 4.5852 -2.9378 -1.4191 9 8 4.1908 -2.2559 -2.3412 10 7 5.2473 -4.0857 -1.6650 11 6 5.7766 -5.0047 -0.6458 12 6 6.4747 -6.1640 -1.3905 13 6 6.7731 -5.5520 -2.7757 14 6 5.5551 -4.6313 -3.0012 15 6 8.0640 -4.7489 -2.7393 16 6 9.2432 -5.6810 -2.4443 17 6 9.3340 -6.7449 -3.5426 18 7 8.0434 -7.4406 -3.6402 19 6 7.9755 -8.8051 -3.5472 20 1 8.7256 -9.3463 -2.9896 21 6 6.9427 -9.4927 -4.1695 22 7 6.2340 -8.9053 -5.1104 23 14 6.5585 -11.2516 -3.6717 24 1 6.1991 -11.2912 -2.2314 25 1 5.4204 -11.7576 -4.4804 26 1 7.7508 -12.1047 -3.9079 27 6 6.8257 -6.6396 -3.8395 28 6 2.1980 -1.1970 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6583 2.1326 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.3517 -0.0002 -0.0086 35 1 5.2864 -2.3718 0.5153 36 1 3.7449 -3.2617 0.5156 37 1 6.4960 -4.4832 -0.0145 38 1 4.9600 -5.3934 -0.0374 39 1 7.3987 -6.4460 -0.8859 40 1 5.8071 -7.0208 -1.4828 41 1 4.7088 -5.2033 -3.3819 42 1 5.8109 -3.8263 -3.6902 43 1 8.2170 -4.2643 -3.7036 44 1 7.9976 -3.9908 -1.9589 45 1 10.1670 -5.1028 -2.4206 46 1 9.0920 -6.1651 -1.4795 47 1 9.5643 -6.2675 -4.4951 48 1 10.1180 -7.4601 -3.2940 49 1 5.5125 -9.3859 -5.5455 50 1 5.9484 -7.2804 -3.7503 51 1 6.8471 -6.1823 -4.8286 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040364228.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:28 Heat of formation + Delta-G solvation = -13.172184 kcal Electronic energy + Delta-G solvation = -30314.385836 eV Core-core repulsion = 26470.849830 eV Total energy + Delta-G solvation = -3843.536006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.59290 -40.47042 -39.41283 -37.27787 -34.81277 -34.42473 -33.11354 -32.62901 -31.74686 -30.56714 -29.16789 -27.72655 -27.21230 -26.59487 -24.25572 -23.69870 -23.05916 -22.37138 -21.67919 -20.22925 -19.52953 -18.52147 -18.00551 -17.42987 -17.22673 -16.72088 -16.48276 -16.16194 -15.76716 -15.59805 -15.48895 -15.09156 -14.78043 -14.74738 -14.53542 -14.18811 -14.12121 -13.96995 -13.81919 -13.69211 -13.41966 -13.36496 -13.13994 -12.92334 -12.76367 -12.73526 -12.68336 -12.47837 -12.21936 -12.06420 -11.94670 -11.84821 -11.84135 -11.65937 -11.39436 -11.16298 -11.04566 -10.92975 -10.50207 -9.68420 -9.62403 -9.46944 -8.64908 -7.84328 -5.28150 0.42002 0.51500 1.48667 1.50066 1.56864 1.63290 2.01339 2.53472 2.87202 3.28339 3.43375 3.67594 3.72396 3.79942 3.90094 3.92924 4.04062 4.07455 4.24837 4.26503 4.28259 4.37094 4.42093 4.48015 4.53295 4.57979 4.61743 4.64181 4.68673 4.74123 4.81085 4.81452 4.83378 4.93542 4.97431 4.99528 5.14014 5.14777 5.19340 5.21115 5.30421 5.31171 5.34495 5.39174 5.48931 5.57555 5.61753 5.66637 5.70510 5.71537 5.76223 6.15466 6.40901 6.57987 7.15579 7.17425 7.88996 8.41854 9.22036 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002438 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.179962 B =11480.967701 C =12282.915857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.076 4.076 7 C -0.088 4.088 8 C 0.524 3.476 9 O -0.586 6.586 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.103 4.103 13 C -0.082 4.082 14 C 0.124 3.876 15 C -0.085 4.085 16 C -0.120 4.120 17 C 0.136 3.864 18 N -0.604 5.604 19 C -0.251 4.251 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.938 5.938 23 Si 0.962 3.038 24 H -0.274 1.274 25 H -0.300 1.300 26 H -0.277 1.277 27 C 0.202 3.798 28 C -0.125 4.125 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.005 0.995 48 H 0.055 0.945 49 H 0.247 0.753 50 H 0.056 0.944 51 H -0.018 1.018 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 17.126 16.909 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.077 4.077 7 C -0.127 4.127 8 C 0.314 3.686 9 O -0.466 6.466 10 N -0.346 5.346 11 C -0.018 4.018 12 C -0.141 4.141 13 C -0.084 4.084 14 C 0.000 4.000 15 C -0.123 4.123 16 C -0.159 4.159 17 C 0.011 3.989 18 N -0.327 5.327 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.246 4.246 22 N -0.584 5.584 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.227 1.227 26 H -0.203 1.203 27 C 0.075 3.925 28 C -0.143 4.143 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.023 0.977 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.000 1.000 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.792 17.459 16.365 24.405 hybrid contribution -0.362 -1.301 -0.960 1.657 sum -5.154 16.158 15.405 22.912 Atomic orbital electron populations 1.20820 0.89714 1.03728 1.02624 1.20228 0.97394 0.93104 0.99317 1.21329 0.94553 0.98146 1.00971 1.21396 0.94714 0.98497 0.99619 1.21220 1.00423 0.92316 1.00540 1.19511 0.93854 0.94380 0.99946 1.20687 1.03753 0.96073 0.92175 1.20864 0.76488 0.78866 0.92343 1.90698 1.52822 1.54847 1.48236 1.48692 1.55720 1.21946 1.08201 1.22325 0.98954 0.90038 0.90455 1.22430 1.01032 0.96344 0.94294 1.21607 0.94048 0.95287 0.97464 1.21983 0.96740 0.95895 0.85365 1.21126 0.93337 0.96978 1.00855 1.21941 0.97892 0.96817 0.99260 1.21102 0.87870 0.94225 0.95695 1.44254 1.01480 1.02147 1.84772 1.19438 1.10721 0.83213 1.24794 0.91256 1.25733 1.01126 1.01274 0.96490 1.70189 1.23926 1.38618 1.25698 0.85423 0.77104 0.80657 0.77786 1.19987 1.22693 1.20319 1.20239 0.90433 0.90090 0.91701 1.21088 0.93761 0.98318 1.01181 0.91296 0.90953 0.90046 0.84233 0.84118 0.85327 0.85323 0.85893 0.88399 0.89475 0.88947 0.92822 0.93450 0.92342 0.93850 0.90967 0.90160 0.91149 0.97734 0.92642 0.94351 0.92515 0.99998 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 2 C -0.10 -2.02 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 4 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 5 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 6 C -0.08 -1.71 4.37 -19.87 -0.09 -1.80 16 7 C -0.09 -1.67 5.02 29.10 0.15 -1.53 16 8 C 0.52 15.02 7.84 87.66 0.69 15.70 16 9 O -0.59 -22.38 16.30 -3.01 -0.05 -22.43 16 10 N -0.61 -17.18 3.32 -812.08 -2.69 -19.88 16 11 C 0.10 2.26 6.12 86.77 0.53 2.79 16 12 C -0.10 -3.06 5.67 31.55 0.18 -2.88 16 13 C -0.08 -2.85 0.55 -51.83 -0.03 -2.87 16 14 C 0.12 4.32 5.83 86.63 0.51 4.83 16 15 C -0.09 -2.61 4.69 30.35 0.14 -2.47 16 16 C -0.12 -3.58 5.91 30.72 0.18 -3.40 16 17 C 0.14 5.38 6.49 86.36 0.56 5.94 16 18 N -0.60 -28.92 2.89 -700.44 -2.02 -30.94 16 19 C -0.25 -13.24 9.60 84.03 0.81 -12.43 16 20 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 21 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 22 N -0.94 -55.19 11.17 21.65 0.24 -54.95 16 23 Si 0.96 43.93 29.59 68.60 2.03 45.96 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.20 9.44 3.96 86.01 0.34 9.78 16 28 C -0.13 -2.80 9.36 22.27 0.21 -2.59 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.08 0.89 8.09 -2.38 -0.02 0.87 16 32 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.13 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.12 1.79 8.09 -2.39 -0.02 1.77 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 2.60 6.09 -2.39 -0.01 2.59 16 40 H 0.05 1.86 7.87 -2.39 -0.02 1.84 16 41 H 0.05 1.83 8.01 -2.38 -0.02 1.82 16 42 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.88 7.83 -2.39 -0.02 1.86 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.00 6.31 -2.39 -0.02 1.99 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 50 H 0.06 3.03 5.90 -2.38 -0.01 3.02 16 51 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 52 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -71.07 405.92 4.23 -66.84 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.88 Total: 18.65 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.84 Total: -3.26 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.48 Total: -105.77 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.07 4.23 -66.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040364228.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.667 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds