Wall clock time and date at job start Wed Apr 1 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 119.99883 * 2 1 4 4 C 1.38218 * 119.99783 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00110 * 0.02562 * 4 3 2 6 6 C 1.38214 * 120.00230 * 359.95003 * 5 4 3 7 7 C 1.50702 * 120.00184 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47204 * 89.99685 * 7 6 5 9 9 O 1.21283 * 120.00034 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99860 * 180.02562 * 8 7 6 11 11 C 1.48182 * 127.80429 * 359.97313 * 10 8 7 12 12 C 1.54499 * 104.63182 * 140.72369 * 11 10 8 13 13 C 1.53834 * 104.79521 * 23.80225 * 12 11 10 14 14 C 1.48258 * 127.80157 * 180.02562 * 10 8 7 15 15 C 1.52483 * 110.21814 * 240.97233 * 13 12 11 16 16 C 1.53117 * 109.65373 * 178.05526 * 15 13 12 17 17 C 1.52761 * 109.36189 * 60.36277 * 16 15 13 18 18 N 1.46927 * 109.08905 * 305.09427 * 17 16 15 19 19 C 1.36940 * 120.67666 * 234.04469 * 18 17 16 20 20 H 1.08002 * 119.99347 * 27.09728 * 19 18 17 21 21 C 1.38810 * 120.00268 * 207.36932 * 19 18 17 22 22 N 1.31627 * 119.99957 * 16.85032 * 21 19 18 23 23 Si 1.86802 * 120.00135 * 196.85357 * 21 19 18 24 24 H 1.48497 * 109.46685 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46840 * 119.99656 * 23 21 19 26 26 H 1.48497 * 109.46951 * 240.00183 * 23 21 19 27 27 C 1.47028 * 118.64624 * 53.77039 * 18 17 16 28 28 C 1.38215 * 119.99978 * 180.20762 * 2 1 3 29 29 H 1.09003 * 109.46994 * 90.00429 * 1 2 3 30 30 H 1.08996 * 109.47368 * 210.00111 * 1 2 3 31 31 H 1.08999 * 109.47327 * 330.00107 * 1 2 3 32 32 H 1.08003 * 119.99921 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.99596 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.00088 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46799 * 329.99943 * 7 6 5 36 36 H 1.08996 * 109.46907 * 210.00027 * 7 6 5 37 37 H 1.09005 * 110.40453 * 21.93663 * 11 10 8 38 38 H 1.08998 * 110.40602 * 259.51308 * 11 10 8 39 39 H 1.08998 * 110.37447 * 264.96653 * 12 11 10 40 40 H 1.09006 * 110.46978 * 142.67723 * 12 11 10 41 41 H 1.08994 * 110.42937 * 100.36658 * 14 10 8 42 42 H 1.09004 * 110.42279 * 337.88683 * 14 10 8 43 43 H 1.09001 * 109.44054 * 298.10966 * 15 13 12 44 44 H 1.09003 * 109.44608 * 58.00104 * 15 13 12 45 45 H 1.08999 * 109.50400 * 180.43232 * 16 15 13 46 46 H 1.09001 * 109.50060 * 300.54679 * 16 15 13 47 47 H 1.08996 * 109.49487 * 185.18315 * 17 16 15 48 48 H 1.09011 * 109.41664 * 64.95231 * 17 16 15 49 49 H 0.96999 * 120.00069 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.57618 * 67.33076 * 27 18 17 51 51 H 1.09009 * 109.57314 * 187.70571 * 27 18 17 52 52 H 1.07992 * 120.00210 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 3.5806 -1.1970 -0.0011 7 6 4.3341 -2.5021 -0.0017 8 6 4.5865 -2.9371 1.4190 9 8 4.1927 -2.2548 2.3411 10 7 5.2497 -4.0844 1.6647 11 6 5.8024 -5.0429 0.6791 12 6 7.1532 -5.4879 1.2827 13 6 7.0070 -5.2447 2.7946 14 6 5.5901 -4.6729 2.9821 15 6 8.0485 -4.2372 3.2694 16 6 7.8605 -3.9683 4.7650 17 6 8.0359 -5.2730 5.5401 18 7 7.1154 -6.2816 4.9978 19 6 6.2422 -6.9439 5.8189 20 1 5.8973 -6.4766 6.7295 21 6 5.8049 -8.2180 5.4838 22 7 6.4570 -8.9218 4.5827 23 14 4.2911 -8.9338 6.3117 24 1 3.7445 -7.9495 7.2800 25 1 3.2638 -9.2410 5.2843 26 1 4.6619 -10.1798 7.0293 27 6 7.1466 -6.5609 3.5547 28 6 2.1980 -1.1970 -0.0043 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1327 -0.0010 34 1 5.3517 0.0000 -0.0024 35 1 5.2861 -2.3717 -0.5162 36 1 3.7447 -3.2617 -0.5151 37 1 5.9586 -4.5524 -0.2818 38 1 5.1364 -5.8984 0.5662 39 1 7.9665 -4.8854 0.8782 40 1 7.3299 -6.5450 1.0837 41 1 4.8893 -5.4682 3.2360 42 1 5.5895 -3.9034 3.7541 43 1 9.0470 -4.6384 3.0956 44 1 7.9310 -3.3057 2.7158 45 1 8.6011 -3.2422 5.1001 46 1 6.8592 -3.5753 4.9410 47 1 7.8124 -5.1032 6.5933 48 1 9.0633 -5.6219 5.4346 49 1 6.1512 -9.8119 4.3482 50 1 8.0933 -7.0342 3.2947 51 1 6.3211 -7.2230 3.2929 52 1 1.6581 -2.1322 -0.0081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040364230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:35 Heat of formation + Delta-G solvation = 4.803570 kcal Electronic energy + Delta-G solvation = -30616.027802 eV Core-core repulsion = 26773.271283 eV Total energy + Delta-G solvation = -3842.756519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.26641 -39.43740 -38.07590 -35.74919 -33.59234 -33.04901 -32.14092 -31.43271 -30.00526 -28.84983 -28.21505 -26.97746 -25.33971 -25.22014 -23.15193 -22.29094 -22.12890 -20.98534 -20.38677 -18.89060 -18.04914 -16.93347 -16.73186 -16.58328 -15.91940 -15.36992 -15.22581 -14.77644 -14.61974 -14.13143 -13.98963 -13.90724 -13.76937 -13.31337 -13.26079 -13.06014 -13.01299 -12.74104 -12.61335 -12.40485 -12.30550 -12.00116 -11.91519 -11.79879 -11.47144 -11.18662 -11.08238 -11.04418 -11.00107 -10.83083 -10.70802 -10.37847 -10.26527 -10.11855 -9.75844 -9.68285 -9.47227 -9.40038 -8.84372 -8.65336 -8.50125 -8.36575 -6.67693 -5.80710 -3.21377 1.25591 1.33447 2.85251 3.19985 3.36373 3.45098 3.48005 3.73282 4.48734 4.53295 4.66394 4.72384 4.78950 4.93766 5.01435 5.09068 5.14592 5.18978 5.22123 5.36333 5.39735 5.41099 5.42712 5.52458 5.56059 5.57753 5.64638 5.67012 5.69264 5.82242 5.97048 6.03313 6.10874 6.13008 6.16195 6.23031 6.29523 6.37107 6.38240 6.43595 6.47546 6.53103 6.53328 6.69610 6.78071 6.84414 6.93499 6.95104 7.04478 7.29413 7.58553 7.79864 7.86202 8.40722 8.42867 9.20207 9.83395 10.40381 11.28033 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002841 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.978733 B = 9854.910828 C =10667.211735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.099 4.099 8 C 0.531 3.469 9 O -0.537 6.537 10 N -0.624 5.624 11 C 0.101 3.899 12 C -0.124 4.124 13 C -0.094 4.094 14 C 0.127 3.873 15 C -0.091 4.091 16 C -0.139 4.139 17 C 0.145 3.855 18 N -0.592 5.592 19 C -0.247 4.247 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.188 3.812 28 C -0.105 4.105 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.252 0.748 50 H 0.022 0.978 51 H 0.090 0.910 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 14.654 -14.589 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.057 4.057 7 C -0.139 4.139 8 C 0.319 3.681 9 O -0.414 6.414 10 N -0.358 5.358 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.097 4.097 14 C 0.006 3.994 15 C -0.129 4.129 16 C -0.178 4.178 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.376 4.376 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.062 3.938 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.040 0.960 51 H 0.108 0.892 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.057 14.941 -14.125 20.958 hybrid contribution -0.612 -0.568 0.367 0.912 sum -4.670 14.373 -13.759 20.438 Atomic orbital electron populations 1.20780 0.91293 1.02854 1.02087 1.19857 0.95986 0.93110 0.99800 1.20985 0.94277 0.97338 1.01599 1.21056 0.94294 0.97802 1.00272 1.20949 0.99659 0.92001 1.00260 1.19287 0.93510 0.93689 0.99256 1.20660 1.01907 0.95989 0.95320 1.19993 0.77691 0.79523 0.90869 1.90727 1.51069 1.53271 1.46352 1.49221 1.55442 1.21193 1.09942 1.22437 0.95444 0.92331 0.92023 1.22540 0.95863 1.02144 0.95779 1.21854 0.94006 0.99677 0.94120 1.22438 0.95492 0.97570 0.83871 1.21321 0.98079 0.97328 0.96148 1.22037 1.00973 0.99066 0.95728 1.20822 0.92910 0.88414 0.95974 1.44057 1.40666 1.43804 1.02858 1.19231 1.18073 0.95661 1.04650 0.91648 1.24991 0.99615 0.95494 0.99529 1.70032 1.38610 1.10576 1.35665 0.86280 0.83171 0.78836 0.78911 1.20229 1.21588 1.21762 1.20787 1.00978 0.89814 0.82242 1.20856 0.93395 0.97633 1.00454 0.91319 0.91507 0.91620 0.86342 0.86162 0.86350 0.88226 0.88229 0.91019 0.90951 0.91563 0.89934 0.90620 0.90059 0.92593 0.93800 0.93189 0.92111 0.92944 0.96558 0.93749 0.96007 0.89175 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.59 16 2 C -0.09 -0.97 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 5 C -0.11 -1.31 9.70 -39.59 -0.38 -1.70 16 6 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -1.13 4.81 -29.03 -0.14 -1.27 16 8 C 0.53 8.45 7.91 -10.99 -0.09 8.36 16 9 O -0.54 -10.84 16.31 5.56 0.09 -10.75 16 10 N -0.62 -9.76 3.32 -169.39 -0.56 -10.33 16 11 C 0.10 1.26 6.92 -2.33 -0.02 1.24 16 12 C -0.12 -1.74 6.29 -25.51 -0.16 -1.90 16 13 C -0.09 -1.65 0.68 -154.04 -0.11 -1.76 16 14 C 0.13 2.38 5.79 -2.58 -0.01 2.37 16 15 C -0.09 -1.53 4.48 -26.94 -0.12 -1.65 16 16 C -0.14 -2.49 5.87 -26.79 -0.16 -2.65 16 17 C 0.15 3.03 6.47 -3.93 -0.03 3.00 16 18 N -0.59 -14.29 2.83 -172.84 -0.49 -14.78 16 19 C -0.25 -6.61 9.59 -15.06 -0.14 -6.75 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.29 11.17 55.49 0.62 -24.67 16 23 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.19 4.17 3.67 -3.95 -0.01 4.15 16 28 C -0.11 -1.28 9.36 -39.58 -0.37 -1.65 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.10 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 40 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 41 H 0.08 1.60 7.73 -51.93 -0.40 1.19 16 42 H 0.08 1.69 5.63 -51.93 -0.29 1.40 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.17 6.20 -51.93 -0.32 0.85 16 47 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 48 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.09 2.24 5.90 -51.92 -0.31 1.93 16 52 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -31.70 404.68 -11.37 -43.08 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.78 Total: 1.80 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.32 Total: -6.92 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.43 Total: -49.78 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.70 -11.37 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040364230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.881 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds