Wall clock time and date at job start Wed Apr 1 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38267 * 119.99477 * 2 1 4 4 C 1.38214 * 119.99898 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99781 * 359.97365 * 4 3 2 6 6 C 1.38212 * 120.00123 * 359.81479 * 5 4 3 7 7 C 1.38207 * 120.00715 * 180.02562 * 2 1 3 8 8 C 1.50707 * 119.99483 * 359.97438 * 7 2 1 9 9 C 1.50696 * 109.47022 * 85.00096 * 8 7 2 10 10 O 1.21292 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00213 * 179.97438 * 9 8 7 12 12 C 1.48187 * 127.79950 * 359.96850 * 11 9 8 13 13 C 1.54503 * 104.63011 * 140.70164 * 12 11 9 14 14 C 1.53834 * 104.78758 * 23.81377 * 13 12 11 15 15 C 1.48253 * 127.80256 * 179.97438 * 11 9 8 16 16 C 1.52486 * 110.21589 * 118.75935 * 14 13 12 17 17 C 1.53132 * 109.60070 * 61.99634 * 16 14 13 18 18 C 1.53187 * 109.29024 * 60.48827 * 17 16 14 19 19 N 1.46926 * 108.90490 * 304.94008 * 18 17 16 20 20 C 1.36938 * 120.68361 * 234.04809 * 19 18 17 21 21 H 1.07994 * 120.00347 * 27.35070 * 20 19 18 22 22 C 1.38815 * 119.99791 * 207.35977 * 20 19 18 23 23 N 1.31620 * 120.00071 * 17.22961 * 22 20 19 24 24 Si 1.86802 * 119.99808 * 197.22698 * 22 20 19 25 25 H 1.48503 * 109.46690 * 90.00029 * 24 22 20 26 26 H 1.48500 * 109.46988 * 209.99680 * 24 22 20 27 27 H 1.48493 * 109.47309 * 330.00417 * 24 22 20 28 28 C 1.47038 * 118.63457 * 54.01985 * 19 18 17 29 29 H 1.09001 * 109.47112 * 269.97818 * 1 2 3 30 30 H 1.08994 * 109.47450 * 29.98299 * 1 2 3 31 31 H 1.09001 * 109.46434 * 149.98170 * 1 2 3 32 32 H 1.08000 * 119.99830 * 359.97429 * 3 2 1 33 33 H 1.07995 * 119.99833 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.99764 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.00050 * 180.23365 * 6 5 4 36 36 H 1.08995 * 109.47135 * 324.99990 * 8 7 2 37 37 H 1.09004 * 109.46711 * 204.99890 * 8 7 2 38 38 H 1.09006 * 110.40061 * 21.91821 * 12 11 9 39 39 H 1.08997 * 110.41117 * 259.49614 * 12 11 9 40 40 H 1.08998 * 110.38269 * 264.98501 * 13 12 11 41 41 H 1.09009 * 110.46655 * 142.68685 * 13 12 11 42 42 H 1.09003 * 110.43020 * 100.37935 * 15 11 9 43 43 H 1.09003 * 110.42530 * 337.90191 * 15 11 9 44 44 H 1.08994 * 109.45091 * 301.95636 * 16 14 13 45 45 H 1.09002 * 109.42629 * 182.02066 * 16 14 13 46 46 H 1.09001 * 109.50099 * 300.54637 * 17 16 14 47 47 H 1.08995 * 109.53577 * 180.45685 * 17 16 14 48 48 H 1.09001 * 109.56452 * 185.10741 * 18 17 16 49 49 H 1.09001 * 109.56083 * 64.76888 * 18 17 16 50 50 H 0.97001 * 119.99761 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.58718 * 67.00703 * 28 19 18 52 52 H 1.09005 * 109.58488 * 187.43158 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1976 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 3.5807 -1.1967 0.0039 7 6 2.1982 -1.1968 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 6 1.0858 -2.8748 -1.4159 10 8 1.4096 -2.1516 -2.3342 11 7 0.4051 -4.0118 -1.6613 12 6 -0.0725 -5.0143 -0.6800 13 6 -1.4656 -5.4353 -1.1989 14 6 -1.4336 -5.1255 -2.7054 15 6 -0.0349 -4.5422 -2.9740 16 6 -1.6345 -6.4046 -3.5108 17 6 -3.0094 -7.0001 -3.1946 18 6 -4.0975 -5.9916 -3.5761 19 7 -3.8291 -4.7199 -2.8910 20 6 -4.7904 -4.1267 -2.1168 21 1 -5.5483 -4.7305 -1.6401 22 6 -4.7907 -2.7493 -1.9449 23 7 -4.1063 -1.9832 -2.7678 24 14 -5.7624 -1.9829 -0.5456 25 1 -4.9004 -1.8837 0.6595 26 1 -6.2158 -0.6257 -0.9430 27 1 -6.9434 -2.8299 -0.2410 28 6 -2.5069 -4.0974 -3.0533 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3632 -0.8899 -0.5141 32 1 1.6581 2.1327 -0.0004 33 1 4.1203 2.1329 -0.0010 34 1 5.3517 0.0003 -0.0014 35 1 4.1208 -2.1320 0.0077 36 1 0.5343 -2.3959 0.5893 37 1 2.0699 -3.2824 0.4334 38 1 -0.1552 -4.5669 0.3106 39 1 0.5992 -5.8723 -0.6555 40 1 -2.2454 -4.8529 -0.7082 41 1 -1.6279 -6.5005 -1.0338 42 1 0.6440 -5.3237 -3.3155 43 1 -0.0922 -3.7392 -3.7088 44 1 -0.8586 -7.1239 -3.2490 45 1 -1.5738 -6.1763 -4.5749 46 1 -3.0745 -7.2199 -2.1290 47 1 -3.1486 -7.9186 -3.7647 48 1 -5.0719 -6.3727 -3.2700 49 1 -4.0876 -5.8345 -4.6546 50 1 -4.1069 -1.0206 -2.6478 51 1 -2.3804 -3.7723 -4.0859 52 1 -2.4221 -3.2403 -2.3852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040524096.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:38 Heat of formation + Delta-G solvation = -9.835263 kcal Electronic energy + Delta-G solvation = -31392.435925 eV Core-core repulsion = 27549.044618 eV Total energy + Delta-G solvation = -3843.391306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.53375 -40.54904 -39.32913 -37.23043 -34.89954 -34.29105 -33.24678 -32.64716 -31.65509 -30.47675 -29.26780 -27.79042 -27.26307 -26.40012 -24.23297 -23.83678 -23.05773 -22.30942 -21.72388 -20.27241 -19.45350 -18.58988 -17.98108 -17.35237 -17.13137 -16.79317 -16.39178 -16.33357 -15.78177 -15.72799 -15.42365 -15.20035 -14.85580 -14.71392 -14.33313 -14.16726 -14.03675 -13.92723 -13.85115 -13.72371 -13.42193 -13.30582 -13.13350 -12.93719 -12.89673 -12.82253 -12.73908 -12.40321 -12.25369 -12.09728 -11.89139 -11.85109 -11.73517 -11.64653 -11.34745 -11.17232 -11.00670 -10.88658 -10.53340 -9.70435 -9.66273 -9.48720 -8.66882 -7.86148 -5.30944 0.40269 0.49320 1.42866 1.43776 1.52985 1.64022 2.04675 2.49628 2.85752 3.26761 3.49727 3.65014 3.77263 3.84616 3.86177 3.96794 4.03590 4.07946 4.14314 4.30127 4.33684 4.36614 4.36863 4.42538 4.49404 4.51576 4.62307 4.65686 4.70310 4.71560 4.78881 4.81732 4.88066 4.89911 4.91864 5.01329 5.04659 5.16439 5.18785 5.22992 5.24030 5.29156 5.42316 5.47125 5.55605 5.56191 5.60199 5.62841 5.72098 5.74804 5.78918 6.13220 6.38183 6.63395 7.14840 7.18413 7.88363 8.40156 9.19033 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.003902 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.117084 B = 7173.199153 C = 8917.864885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.083 4.083 8 C -0.090 4.090 9 C 0.529 3.471 10 O -0.586 6.586 11 N -0.623 5.623 12 C 0.102 3.898 13 C -0.108 4.108 14 C -0.087 4.087 15 C 0.120 3.880 16 C -0.091 4.091 17 C -0.121 4.121 18 C 0.134 3.866 19 N -0.605 5.605 20 C -0.252 4.252 21 H 0.069 0.931 22 C -0.049 4.049 23 N -0.936 5.936 24 Si 0.956 3.044 25 H -0.282 1.282 26 H -0.302 1.302 27 H -0.265 1.265 28 C 0.207 3.793 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.003 0.997 50 H 0.244 0.756 51 H -0.031 1.031 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.656 -6.352 9.236 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.130 4.130 9 C 0.319 3.681 10 O -0.466 6.466 11 N -0.356 5.356 12 C -0.019 4.019 13 C -0.146 4.146 14 C -0.090 4.090 15 C -0.004 4.004 16 C -0.129 4.129 17 C -0.160 4.160 18 C 0.009 3.991 19 N -0.328 5.328 20 C -0.382 4.382 21 H 0.087 0.913 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.785 3.215 25 H -0.209 1.209 26 H -0.229 1.229 27 H -0.190 1.190 28 C 0.081 3.919 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.071 0.929 49 H 0.021 0.979 50 H 0.053 0.947 51 H -0.013 1.013 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.845 -5.731 8.780 19.000 hybrid contribution -1.202 1.296 -0.144 1.773 sum 14.643 -4.435 8.636 17.569 Atomic orbital electron populations 1.20777 0.91980 1.01926 1.02446 1.19916 0.95739 0.93774 0.99429 1.21247 0.95301 0.97357 1.01536 1.21445 0.93798 0.99367 0.99399 1.21430 1.01109 0.92046 1.00328 1.21262 0.92848 0.99586 0.99434 1.19372 0.94348 0.93264 1.01409 1.20672 1.02675 0.96937 0.92677 1.20705 0.76771 0.78720 0.91908 1.90691 1.56171 1.51510 1.48249 1.49138 1.54648 1.21819 1.10007 1.22742 0.95097 0.91601 0.92506 1.22407 0.96078 1.02448 0.93639 1.21637 0.93345 0.96998 0.96993 1.22290 0.94928 0.97461 0.85684 1.21363 0.98021 0.94989 0.98500 1.21918 0.94399 0.97686 1.01956 1.21130 0.97602 0.86697 0.93641 1.44298 1.10111 1.22890 1.55462 1.19482 1.08081 0.89524 1.21150 0.91321 1.25718 1.01004 0.96987 1.00724 1.70228 1.47154 1.03295 1.37566 0.85420 0.78966 0.77309 0.79804 1.20916 1.22895 1.18950 1.20358 0.83226 0.93316 0.95010 0.89594 0.91921 0.94166 0.85199 0.83669 0.83415 0.84287 0.87579 0.84768 0.89143 0.87420 0.93499 0.88225 0.88637 0.94257 0.89069 0.93420 0.91348 0.89866 0.92937 0.97906 0.94681 1.01323 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 9.22 71.24 0.66 -2.97 16 2 C -0.09 -2.66 5.88 -19.86 -0.12 -2.77 16 3 C -0.14 -3.58 9.70 22.27 0.22 -3.36 16 4 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 5 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 6 C -0.11 -2.69 9.68 22.27 0.22 -2.48 16 7 C -0.08 -2.34 4.37 -19.87 -0.09 -2.43 16 8 C -0.09 -2.32 4.13 29.10 0.12 -2.20 16 9 C 0.53 18.23 7.13 87.66 0.63 18.86 16 10 O -0.59 -25.90 16.31 -3.07 -0.05 -25.95 16 11 N -0.62 -19.58 3.32 -808.26 -2.68 -22.26 16 12 C 0.10 2.36 6.92 86.57 0.60 2.96 16 13 C -0.11 -3.17 5.58 31.39 0.18 -3.00 16 14 C -0.09 -3.01 0.68 -51.88 -0.04 -3.05 16 15 C 0.12 4.02 6.13 86.35 0.53 4.55 16 16 C -0.09 -2.57 4.44 30.47 0.14 -2.44 16 17 C -0.12 -3.52 5.87 30.70 0.18 -3.34 16 18 C 0.13 5.39 6.50 86.36 0.56 5.95 16 19 N -0.60 -29.83 2.78 -699.87 -1.95 -31.78 16 20 C -0.25 -13.69 9.59 84.03 0.81 -12.88 16 21 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 22 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 23 N -0.94 -57.57 11.18 21.65 0.24 -57.33 16 24 Si 0.96 45.22 29.59 68.60 2.03 47.25 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.21 10.09 3.63 86.16 0.31 10.41 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.04 1.49 6.16 -2.39 -0.01 1.48 16 32 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.11 2.63 6.80 -2.39 -0.02 2.61 16 37 H 0.13 2.36 8.05 -2.39 -0.02 2.34 16 38 H 0.09 1.80 7.31 -2.38 -0.02 1.79 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.78 7.65 -2.39 -0.02 1.76 16 41 H 0.10 2.37 6.51 -2.38 -0.02 2.36 16 42 H 0.10 2.57 7.83 -2.39 -0.02 2.55 16 43 H 0.04 1.64 7.55 -2.39 -0.02 1.62 16 44 H 0.09 1.90 8.13 -2.39 -0.02 1.88 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.92 6.61 -2.39 -0.02 1.91 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 49 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 50 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 51 H -0.03 -1.76 8.09 -2.39 -0.02 -1.78 16 52 H 0.05 2.63 6.05 -2.38 -0.01 2.62 16 Total: -1.00 -77.05 400.85 4.24 -72.81 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.89 Total: 22.84 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.76 Total: -5.58 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.39 Total: -111.37 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.05 4.24 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524096.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.979 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds