Wall clock time and date at job start Wed Apr 1 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38240 * 120.00110 * 2 1 4 4 C 1.38229 * 119.99805 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00409 * 359.96026 * 4 3 2 6 6 C 1.50697 * 120.00106 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47295 * 89.99711 * 6 5 4 8 8 O 1.21281 * 119.99637 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.47080 * 125.62847 * 359.97438 * 9 7 6 11 11 C 1.54463 * 107.30201 * 179.02015 * 10 9 7 12 12 C 1.54366 * 102.86924 * 338.50388 * 11 10 9 13 13 C 1.47572 * 125.63104 * 180.02562 * 9 7 6 14 14 C 1.52105 * 110.56042 * 152.60125 * 12 11 10 15 15 C 1.53342 * 109.45056 * 182.76708 * 14 12 11 16 16 N 1.46927 * 108.69188 * 306.70356 * 15 14 12 17 17 C 1.36942 * 120.55871 * 234.33107 * 16 15 14 18 18 H 1.07997 * 119.99652 * 27.98272 * 17 16 15 19 19 C 1.38804 * 119.99944 * 207.98115 * 17 16 15 20 20 N 1.31623 * 120.00336 * 17.47062 * 19 17 16 21 21 Si 1.86800 * 119.99859 * 197.47123 * 19 17 16 22 22 H 1.48500 * 109.47130 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47473 * 120.00136 * 21 19 17 24 24 H 1.48507 * 109.47167 * 240.00025 * 21 19 17 25 25 C 1.46941 * 118.89123 * 54.34806 * 16 15 14 26 26 C 1.52108 * 110.54532 * 276.68807 * 12 11 10 27 27 C 1.38236 * 119.99491 * 0.27146 * 5 4 3 28 28 C 1.38234 * 120.00405 * 359.51666 * 27 5 4 29 29 H 1.08997 * 109.46794 * 89.99954 * 1 2 3 30 30 H 1.09002 * 109.47049 * 210.00334 * 1 2 3 31 31 H 1.08997 * 109.47000 * 330.00045 * 1 2 3 32 32 H 1.07996 * 119.99414 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00050 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47432 * 329.99714 * 6 5 4 35 35 H 1.09006 * 109.46787 * 209.99828 * 6 5 4 36 36 H 1.09007 * 109.87982 * 298.45307 * 10 9 7 37 37 H 1.09002 * 109.87877 * 59.59540 * 10 9 7 38 38 H 1.08998 * 110.72695 * 96.84597 * 11 10 9 39 39 H 1.08995 * 110.73473 * 220.15001 * 11 10 9 40 40 H 1.09001 * 110.37244 * 322.12606 * 13 9 7 41 41 H 1.08994 * 110.37615 * 84.47972 * 13 9 7 42 42 H 1.09002 * 109.47605 * 302.76202 * 14 12 11 43 43 H 1.09001 * 109.47684 * 62.77560 * 14 12 11 44 44 H 1.09004 * 109.60122 * 186.94104 * 15 14 12 45 45 H 1.09005 * 109.60085 * 66.46436 * 15 14 12 46 46 H 0.97002 * 119.99706 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.60233 * 185.88622 * 25 16 15 48 48 H 1.09008 * 109.73059 * 65.48046 * 25 16 15 49 49 H 1.09004 * 109.47423 * 297.20873 * 26 12 11 50 50 H 1.09000 * 109.47415 * 57.22240 * 26 12 11 51 51 H 1.08000 * 119.99727 * 179.73442 * 27 5 4 52 52 H 1.07996 * 120.00150 * 180.25860 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2718 -0.0001 0.0019 6 6 5.7787 -0.0001 0.0031 7 6 6.2800 0.0010 1.4243 8 8 5.4911 0.0021 2.3454 9 7 7.6049 0.0006 1.6716 10 6 8.6665 -0.0012 0.6536 11 6 10.0186 0.0243 1.3999 12 6 9.6366 0.5904 2.7843 13 6 8.2299 0.0010 3.0084 14 6 10.6020 0.0937 3.8495 15 6 10.1596 0.6142 5.2224 16 7 10.0063 2.0734 5.1457 17 6 10.6656 2.8900 6.0253 18 1 11.6015 2.5714 6.4601 19 6 10.1312 4.1270 6.3581 20 7 8.8618 4.3811 6.1202 21 14 11.2134 5.4313 7.1436 22 1 12.5908 4.9003 7.3046 23 1 11.2451 6.6363 6.2764 24 1 10.6645 5.7940 8.4750 25 6 9.1333 2.6421 4.1094 26 6 9.5818 2.1100 2.7430 27 6 3.5805 -1.1972 -0.0029 28 6 2.1982 -1.1972 0.0010 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1206 2.1324 0.0001 34 1 6.1425 0.8895 -0.5111 35 1 6.1424 -0.8905 -0.5099 36 1 8.5955 -0.9033 0.0458 37 1 8.5754 0.8821 0.0215 38 1 10.4265 -0.9821 1.4938 39 1 10.7255 0.6828 0.8953 40 1 7.6601 0.6289 3.6935 41 1 8.3012 -1.0158 3.3943 42 1 10.6047 -0.9963 3.8577 43 1 11.6054 0.4580 3.6289 44 1 10.9139 0.3645 5.9686 45 1 9.2070 0.1603 5.4959 46 1 8.4883 5.2454 6.3531 47 1 9.2110 3.7292 4.1220 48 1 8.1006 2.3470 4.2957 49 1 10.5706 2.5030 2.5067 50 1 8.8724 2.4274 1.9787 51 1 4.1205 -2.1325 -0.0062 52 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040765784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:29 Heat of formation + Delta-G solvation = 2.901155 kcal Electronic energy + Delta-G solvation = -30289.062963 eV Core-core repulsion = 26446.223949 eV Total energy + Delta-G solvation = -3842.839014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.45638 -39.50707 -38.16123 -35.81896 -33.87467 -33.08258 -31.14240 -30.97932 -29.99606 -29.85644 -29.27283 -26.84381 -25.39070 -24.25097 -22.85242 -22.79679 -22.24806 -21.02636 -20.68519 -19.11510 -18.17194 -17.04264 -16.53900 -16.27183 -16.03574 -15.48864 -15.18878 -14.86493 -14.82379 -14.18015 -13.96640 -13.84598 -13.70346 -13.48244 -13.29190 -13.18861 -13.01216 -12.79044 -12.67945 -12.52489 -12.31464 -12.05676 -11.89748 -11.78841 -11.64410 -11.32811 -11.21623 -11.15759 -11.01758 -10.87149 -10.71169 -10.43594 -10.18287 -10.15599 -9.81109 -9.71543 -9.51176 -9.37194 -8.95023 -8.55439 -8.45240 -8.41824 -6.63101 -5.75662 -3.18250 1.23858 1.37913 2.79277 3.11863 3.38177 3.46131 3.48224 3.72733 4.51454 4.54316 4.61437 4.67576 4.69863 4.82551 4.92970 4.94213 5.03061 5.07336 5.29200 5.32140 5.35962 5.38684 5.40663 5.42551 5.44559 5.52130 5.63975 5.64925 5.68361 5.76044 5.91157 5.98611 6.00536 6.01415 6.09019 6.10741 6.27180 6.32659 6.33337 6.39939 6.49164 6.51851 6.53959 6.62765 6.67767 6.76970 6.87456 6.95373 6.99837 7.38573 7.69296 7.70700 7.82407 8.34191 8.47909 9.24007 9.87860 10.44453 11.32377 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.002584 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.339713 B =10832.883512 C =12112.674588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.099 4.099 5 C -0.069 4.069 6 C -0.097 4.097 7 C 0.526 3.474 8 O -0.529 6.529 9 N -0.617 5.617 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.056 4.056 13 C 0.116 3.884 14 C -0.117 4.117 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.171 3.829 26 C -0.124 4.124 27 C -0.102 4.102 28 C -0.121 4.121 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.253 0.747 47 H 0.087 0.913 48 H 0.019 0.981 49 H 0.057 0.943 50 H 0.047 0.953 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.565 -11.295 -18.196 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.137 4.137 7 C 0.314 3.686 8 O -0.405 6.405 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.057 4.057 13 C -0.006 4.006 14 C -0.157 4.157 15 C 0.016 3.984 16 N -0.314 5.314 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.045 3.955 26 C -0.163 4.163 27 C -0.120 4.120 28 C -0.139 4.139 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.037 0.963 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.173 -11.142 -17.656 22.421 hybrid contribution 0.620 0.734 0.370 1.030 sum -7.553 -10.408 -17.287 21.545 Atomic orbital electron populations 1.20778 0.91377 1.02775 1.02047 1.19905 0.95963 0.93289 0.99931 1.20975 0.94058 0.97512 1.01142 1.20991 0.94274 0.97473 0.99006 1.19275 0.93616 0.93626 1.00377 1.20645 0.93127 1.04902 0.94997 1.20110 0.80658 0.76754 0.91089 1.90753 1.54144 1.49236 1.46396 1.48591 1.04695 1.73218 1.08637 1.22051 0.87737 1.00944 0.91340 1.22720 0.95460 1.01709 0.96557 1.21006 0.93807 0.97034 0.93852 1.22364 0.93460 1.00545 0.84238 1.21852 0.98444 0.98432 0.96924 1.20951 0.97814 0.86208 0.93388 1.44051 1.54193 0.99377 1.33733 1.19213 1.00825 0.97955 1.20126 0.91679 1.25048 0.95172 0.99996 0.99517 1.70058 1.10628 1.22562 1.51239 0.86258 0.80108 0.81998 0.78618 1.20288 1.21622 1.21774 1.20815 0.91649 0.99599 0.83434 1.21991 1.00823 0.92561 1.00920 1.20928 0.94227 0.97260 0.99599 1.20939 0.94018 0.97425 1.01494 0.91370 0.91650 0.91573 0.86124 0.86125 0.88148 0.88327 0.91888 0.91601 0.90900 0.90117 0.89306 0.92143 0.92933 0.91806 0.92746 0.96399 0.93707 0.89488 0.96281 0.92393 0.93447 0.86374 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.53 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 4 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 5 C -0.07 -0.85 4.37 -104.62 -0.46 -1.31 16 6 C -0.10 -1.07 5.02 -29.04 -0.15 -1.21 16 7 C 0.53 8.11 7.84 -10.99 -0.09 8.02 16 8 O -0.53 -10.64 16.30 5.56 0.09 -10.55 16 9 N -0.62 -8.92 3.32 -170.74 -0.57 -9.49 16 10 C 0.10 1.10 6.12 -2.96 -0.02 1.08 16 11 C -0.13 -1.46 5.89 -25.25 -0.15 -1.61 16 12 C -0.06 -0.87 0.54 -154.10 -0.08 -0.96 16 13 C 0.12 1.93 4.88 -2.85 -0.01 1.92 16 14 C -0.12 -1.90 4.83 -27.01 -0.13 -2.03 16 15 C 0.14 2.95 6.25 -3.63 -0.02 2.92 16 16 N -0.59 -14.69 2.98 -172.12 -0.51 -15.20 16 17 C -0.25 -6.89 9.57 -15.06 -0.14 -7.04 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 20 N -0.90 -26.54 11.20 55.49 0.62 -25.92 16 21 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.17 4.08 5.01 -3.62 -0.02 4.06 16 26 C -0.12 -2.29 4.83 -27.01 -0.13 -2.42 16 27 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 28 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 39 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 40 H 0.09 1.84 6.11 -51.93 -0.32 1.53 16 41 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 42 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.02 0.38 7.64 -51.93 -0.40 -0.01 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.09 2.35 6.01 -51.93 -0.31 2.04 16 48 H 0.02 0.50 6.59 -51.92 -0.34 0.16 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -33.30 405.14 -11.45 -44.76 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.89 Total: 0.90 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.28 Total: -7.37 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.46 Total: -50.61 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.30 -11.45 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040765784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.657 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds