Wall clock time and date at job start Wed Apr 1 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 119.99799 * 2 1 4 4 C 1.38210 * 119.99967 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99712 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99758 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46829 * 90.00117 * 7 6 5 9 9 O 1.21285 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00057 * 179.97438 * 8 7 6 11 11 C 1.47087 * 125.62861 * 0.02952 * 10 8 7 12 12 C 1.54452 * 107.29729 * 180.96690 * 11 10 8 13 13 C 1.54391 * 102.87333 * 21.50260 * 12 11 10 14 14 C 1.47574 * 125.63218 * 179.72154 * 10 8 7 15 15 C 1.52102 * 110.51207 * 207.35706 * 13 12 11 16 16 C 1.53349 * 109.44462 * 295.90684 * 15 13 12 17 17 N 1.46923 * 108.68736 * 306.70431 * 16 15 13 18 18 C 1.36938 * 120.54934 * 234.32061 * 17 16 15 19 19 H 1.08004 * 119.99952 * 152.04459 * 18 17 16 20 20 C 1.38811 * 120.00320 * 332.04724 * 18 17 16 21 21 N 1.31620 * 119.99623 * 342.46406 * 20 18 17 22 22 Si 1.86803 * 119.99964 * 162.46185 * 20 18 17 23 23 H 1.48493 * 109.47101 * 94.33567 * 22 20 18 24 24 H 1.48502 * 109.46992 * 214.33185 * 22 20 18 25 25 H 1.48495 * 109.47102 * 334.33102 * 22 20 18 26 26 C 1.46937 * 118.89802 * 54.34481 * 17 16 15 27 27 C 1.52116 * 110.50606 * 83.33250 * 13 12 11 28 28 C 1.38214 * 120.00504 * 180.27306 * 2 1 3 29 29 H 1.09000 * 109.47104 * 90.00433 * 1 2 3 30 30 H 1.09002 * 109.47000 * 209.99973 * 1 2 3 31 31 H 1.08996 * 109.47495 * 329.99563 * 1 2 3 32 32 H 1.07994 * 120.00155 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00502 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.00015 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47605 * 210.00285 * 7 6 5 36 36 H 1.08999 * 109.47611 * 330.00608 * 7 6 5 37 37 H 1.09006 * 109.87730 * 300.39094 * 11 10 8 38 38 H 1.09002 * 109.87701 * 61.53504 * 11 10 8 39 39 H 1.09006 * 110.73514 * 139.85246 * 12 11 10 40 40 H 1.09005 * 110.73241 * 263.16124 * 12 11 10 41 41 H 1.09005 * 110.37442 * 275.52589 * 14 10 8 42 42 H 1.09004 * 110.37669 * 37.87002 * 14 10 8 43 43 H 1.08999 * 109.47593 * 55.89491 * 15 13 12 44 44 H 1.08999 * 109.47755 * 175.91679 * 15 13 12 45 45 H 1.09002 * 109.59876 * 186.93681 * 16 15 13 46 46 H 1.08997 * 109.59631 * 66.46561 * 16 15 13 47 47 H 0.97002 * 119.99481 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.60115 * 185.88484 * 26 17 16 49 49 H 1.09003 * 109.72802 * 65.48829 * 26 17 16 50 50 H 1.09001 * 109.47156 * 184.08280 * 27 13 12 51 51 H 1.09003 * 109.47547 * 304.09425 * 27 13 12 52 52 H 1.08007 * 119.99868 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5859 -2.9372 1.4206 9 8 4.1917 -2.2551 2.3428 10 7 5.2481 -4.0850 1.6665 11 6 5.7782 -5.0035 0.6473 12 6 6.4327 -6.1878 1.3922 13 6 5.7535 -6.1401 2.7779 14 6 5.5666 -4.6246 3.0026 15 6 6.6683 -6.7298 3.8404 16 6 6.9010 -8.2166 3.5456 17 7 5.5968 -8.8779 3.4028 18 6 5.2878 -9.9779 4.1576 19 1 4.2584 -10.1915 4.4047 20 6 6.2978 -10.8185 4.6053 21 7 7.4867 -10.7766 4.0422 22 14 5.9694 -12.0089 6.0070 23 1 5.5810 -13.3307 5.4531 24 1 7.1980 -12.1579 6.8279 25 1 4.8686 -11.4843 6.8543 26 6 4.6297 -8.3396 2.4364 27 6 4.4100 -6.8523 2.7377 28 6 2.1981 -1.1969 -0.0057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1326 0.0004 33 1 4.1204 2.1327 0.0001 34 1 5.3516 0.0002 0.0005 35 1 3.7451 -3.2615 -0.5138 36 1 5.2864 -2.3715 -0.5141 37 1 4.9664 -5.3656 0.0164 38 1 6.5232 -4.4913 0.0384 39 1 6.2145 -7.1291 0.8876 40 1 7.5085 -6.0385 1.4844 41 1 6.4857 -4.1786 3.3828 42 1 4.7421 -4.4425 3.6919 43 1 7.6229 -6.2038 3.8307 44 1 6.2038 -6.6220 4.8205 45 1 7.4531 -8.6705 4.3685 46 1 7.4674 -8.3216 2.6203 47 1 8.1923 -11.3642 4.3548 48 1 3.6846 -8.8748 2.5281 49 1 5.0181 -8.4543 1.4244 50 1 3.9136 -6.7463 3.7022 51 1 3.7882 -6.4115 1.9584 52 1 1.6581 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040826306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:34 Heat of formation + Delta-G solvation = 1.971541 kcal Electronic energy + Delta-G solvation = -30007.122236 eV Core-core repulsion = 26164.242911 eV Total energy + Delta-G solvation = -3842.879325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.52791 -39.58969 -38.28592 -35.85518 -33.71175 -33.07647 -32.17534 -30.99807 -30.02553 -29.42881 -28.44941 -27.11558 -26.46578 -24.03268 -23.09962 -22.30627 -22.23989 -21.26101 -20.65423 -19.21357 -18.06396 -17.13224 -16.69586 -16.40680 -16.16176 -15.65176 -15.25434 -14.87526 -14.76828 -14.41483 -14.02656 -13.89577 -13.65869 -13.48103 -13.34863 -13.18386 -13.06521 -12.88504 -12.74564 -12.60972 -12.38412 -12.19899 -12.01874 -11.91327 -11.51422 -11.31798 -11.25084 -11.16327 -11.08643 -10.78193 -10.68242 -10.48033 -10.26199 -10.14453 -9.90096 -9.83713 -9.56321 -9.42330 -8.93096 -8.74111 -8.55659 -8.46524 -6.67167 -5.80699 -3.22100 1.16818 1.25185 2.65238 3.01381 3.36201 3.43957 3.46699 3.63156 4.43239 4.48724 4.53709 4.58209 4.70872 4.74571 4.92865 4.96588 4.99597 5.10909 5.13429 5.27667 5.30015 5.32111 5.36223 5.38055 5.38895 5.48498 5.53146 5.60354 5.66378 5.80407 5.88489 5.94002 5.94803 5.95911 6.05318 6.14888 6.16457 6.28820 6.31965 6.34109 6.39391 6.44594 6.51984 6.61918 6.67780 6.72194 6.83657 6.85585 6.96259 7.34814 7.57431 7.64304 7.78847 8.19536 8.44101 9.20408 9.83976 10.40174 11.27641 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026453 B = 0.002097 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.237991 B =13348.129531 C =13793.388611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.099 4.099 8 C 0.527 3.473 9 O -0.537 6.537 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.123 4.123 13 C -0.055 4.055 14 C 0.114 3.886 15 C -0.127 4.127 16 C 0.173 3.827 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.147 3.853 27 C -0.116 4.116 28 C -0.105 4.105 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.052 0.948 49 H 0.019 0.981 50 H 0.059 0.941 51 H 0.049 0.951 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 20.284 -11.851 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.138 4.138 8 C 0.316 3.684 9 O -0.414 6.414 10 N -0.350 5.350 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.008 4.008 15 C -0.167 4.167 16 C 0.048 3.952 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.021 3.979 27 C -0.155 4.155 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.078 0.922 51 H 0.067 0.933 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.324 20.605 -11.332 24.351 hybrid contribution 0.057 -0.675 0.699 0.973 sum -6.267 19.930 -10.633 23.443 Atomic orbital electron populations 1.20785 0.91239 1.02867 1.02171 1.19867 0.96027 0.93094 0.99688 1.20996 0.94282 0.97381 1.01484 1.21059 0.94301 0.97804 1.00229 1.20948 0.99638 0.92013 1.00341 1.19277 0.93534 0.93641 0.99475 1.20661 1.02098 0.96089 0.94995 1.20117 0.77538 0.79683 0.91092 1.90725 1.51022 1.53275 1.46383 1.48615 1.55830 1.21765 1.08764 1.22151 0.97872 0.90989 0.91235 1.22704 0.99833 0.97541 0.95952 1.21033 0.97000 0.92041 0.95490 1.22419 1.00560 0.93617 0.84238 1.22047 0.96938 1.00394 0.97278 1.20790 0.87462 0.86545 1.00450 1.44040 1.13729 1.30848 1.42744 1.19174 0.93047 1.00844 1.25001 0.91824 1.25017 0.96862 0.97593 1.00186 1.70030 1.03340 1.40335 1.40995 0.86319 0.77237 0.80995 0.82469 1.21500 1.21567 1.20458 1.20934 0.93844 0.90932 0.92230 1.21811 0.94629 0.98132 1.00945 1.20860 0.93366 0.97666 1.00408 0.91251 0.91484 0.91601 0.86302 0.86143 0.86363 0.88035 0.88106 0.91502 0.91761 0.89088 0.90699 0.91766 0.90761 0.93037 0.92393 0.89444 0.96225 0.93683 0.92932 0.96351 0.92242 0.93276 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 6 C -0.06 -0.66 4.37 -104.63 -0.46 -1.12 16 7 C -0.10 -0.99 5.02 -29.03 -0.15 -1.13 16 8 C 0.53 7.30 7.84 -10.98 -0.09 7.22 16 9 O -0.54 -9.61 16.30 5.55 0.09 -9.52 16 10 N -0.62 -8.15 3.32 -170.62 -0.57 -8.71 16 11 C 0.10 1.10 6.11 -2.96 -0.02 1.08 16 12 C -0.12 -1.64 4.91 -25.24 -0.12 -1.76 16 13 C -0.05 -0.85 0.55 -153.99 -0.08 -0.93 16 14 C 0.11 1.68 5.82 -2.75 -0.02 1.66 16 15 C -0.13 -2.27 4.84 -27.01 -0.13 -2.40 16 16 C 0.17 3.89 5.06 -3.63 -0.02 3.87 16 17 N -0.59 -14.16 2.98 -172.13 -0.51 -14.67 16 18 C -0.25 -6.73 9.57 -15.06 -0.14 -6.88 16 19 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 20 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 21 N -0.90 -25.54 11.20 55.49 0.62 -24.92 16 22 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.15 2.91 6.20 -3.63 -0.02 2.89 16 27 C -0.12 -1.94 4.87 -27.01 -0.13 -2.07 16 28 C -0.10 -1.16 9.36 -39.59 -0.37 -1.53 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.31 6.18 -51.93 -0.32 0.99 16 40 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 41 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 42 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 43 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 2.25 6.02 -51.93 -0.31 1.94 16 46 H 0.02 0.45 7.62 -51.93 -0.40 0.06 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.02 0.36 6.56 -51.93 -0.34 0.02 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 52 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -31.74 405.09 -11.43 -43.17 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.88 Total: -0.04 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -3.26 Total: -7.80 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.46 Total: -48.31 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.74 -11.43 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040826306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds