Wall clock time and date at job start Wed Apr 1 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 119.99799 * 2 1 4 4 C 1.38210 * 119.99967 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99712 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99758 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46829 * 90.00117 * 7 6 5 9 9 O 1.21285 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00057 * 179.97438 * 8 7 6 11 11 C 1.47087 * 125.62861 * 0.02952 * 10 8 7 12 12 C 1.54452 * 107.29729 * 180.96690 * 11 10 8 13 13 C 1.54391 * 102.87333 * 21.50260 * 12 11 10 14 14 C 1.47574 * 125.63218 * 179.72154 * 10 8 7 15 15 C 1.52102 * 110.51207 * 207.35706 * 13 12 11 16 16 C 1.53349 * 109.44462 * 295.90684 * 15 13 12 17 17 N 1.46923 * 108.68736 * 306.70431 * 16 15 13 18 18 C 1.36938 * 120.54934 * 234.32061 * 17 16 15 19 19 H 1.08004 * 119.99952 * 152.04459 * 18 17 16 20 20 C 1.38811 * 120.00320 * 332.04724 * 18 17 16 21 21 N 1.31620 * 119.99623 * 342.46406 * 20 18 17 22 22 Si 1.86803 * 119.99964 * 162.46185 * 20 18 17 23 23 H 1.48493 * 109.47101 * 94.33567 * 22 20 18 24 24 H 1.48502 * 109.46992 * 214.33185 * 22 20 18 25 25 H 1.48495 * 109.47102 * 334.33102 * 22 20 18 26 26 C 1.46937 * 118.89802 * 54.34481 * 17 16 15 27 27 C 1.52116 * 110.50606 * 83.33250 * 13 12 11 28 28 C 1.38214 * 120.00504 * 180.27306 * 2 1 3 29 29 H 1.09000 * 109.47104 * 90.00433 * 1 2 3 30 30 H 1.09002 * 109.47000 * 209.99973 * 1 2 3 31 31 H 1.08996 * 109.47495 * 329.99563 * 1 2 3 32 32 H 1.07994 * 120.00155 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.00502 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.00015 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47605 * 210.00285 * 7 6 5 36 36 H 1.08999 * 109.47611 * 330.00608 * 7 6 5 37 37 H 1.09006 * 109.87730 * 300.39094 * 11 10 8 38 38 H 1.09002 * 109.87701 * 61.53504 * 11 10 8 39 39 H 1.09006 * 110.73514 * 139.85246 * 12 11 10 40 40 H 1.09005 * 110.73241 * 263.16124 * 12 11 10 41 41 H 1.09005 * 110.37442 * 275.52589 * 14 10 8 42 42 H 1.09004 * 110.37669 * 37.87002 * 14 10 8 43 43 H 1.08999 * 109.47593 * 55.89491 * 15 13 12 44 44 H 1.08999 * 109.47755 * 175.91679 * 15 13 12 45 45 H 1.09002 * 109.59876 * 186.93681 * 16 15 13 46 46 H 1.08997 * 109.59631 * 66.46561 * 16 15 13 47 47 H 0.97002 * 119.99481 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.60115 * 185.88484 * 26 17 16 49 49 H 1.09003 * 109.72802 * 65.48829 * 26 17 16 50 50 H 1.09001 * 109.47156 * 184.08280 * 27 13 12 51 51 H 1.09003 * 109.47547 * 304.09425 * 27 13 12 52 52 H 1.08007 * 119.99868 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5859 -2.9372 1.4206 9 8 4.1917 -2.2551 2.3428 10 7 5.2481 -4.0850 1.6665 11 6 5.7782 -5.0035 0.6473 12 6 6.4327 -6.1878 1.3922 13 6 5.7535 -6.1401 2.7779 14 6 5.5666 -4.6246 3.0026 15 6 6.6683 -6.7298 3.8404 16 6 6.9010 -8.2166 3.5456 17 7 5.5968 -8.8779 3.4028 18 6 5.2878 -9.9779 4.1576 19 1 4.2584 -10.1915 4.4047 20 6 6.2978 -10.8185 4.6053 21 7 7.4867 -10.7766 4.0422 22 14 5.9694 -12.0089 6.0070 23 1 5.5810 -13.3307 5.4531 24 1 7.1980 -12.1579 6.8279 25 1 4.8686 -11.4843 6.8543 26 6 4.6297 -8.3396 2.4364 27 6 4.4100 -6.8523 2.7377 28 6 2.1981 -1.1969 -0.0057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1326 0.0004 33 1 4.1204 2.1327 0.0001 34 1 5.3516 0.0002 0.0005 35 1 3.7451 -3.2615 -0.5138 36 1 5.2864 -2.3715 -0.5141 37 1 4.9664 -5.3656 0.0164 38 1 6.5232 -4.4913 0.0384 39 1 6.2145 -7.1291 0.8876 40 1 7.5085 -6.0385 1.4844 41 1 6.4857 -4.1786 3.3828 42 1 4.7421 -4.4425 3.6919 43 1 7.6229 -6.2038 3.8307 44 1 6.2038 -6.6220 4.8205 45 1 7.4531 -8.6705 4.3685 46 1 7.4674 -8.3216 2.6203 47 1 8.1923 -11.3642 4.3548 48 1 3.6846 -8.8748 2.5281 49 1 5.0181 -8.4543 1.4244 50 1 3.9136 -6.7463 3.7022 51 1 3.7882 -6.4115 1.9584 52 1 1.6581 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040826306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:32 Heat of formation + Delta-G solvation = -13.677247 kcal Electronic energy + Delta-G solvation = -30007.800818 eV Core-core repulsion = 26164.242911 eV Total energy + Delta-G solvation = -3843.557907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.62998 -40.49038 -39.42240 -37.35286 -34.78592 -34.36713 -32.99148 -32.59865 -31.58613 -30.57593 -29.51683 -28.03658 -27.57336 -25.71462 -24.22008 -23.75329 -23.08681 -22.58785 -21.69789 -20.26363 -19.52853 -18.51131 -17.81596 -17.40028 -17.19067 -16.86185 -16.52479 -16.15218 -15.77994 -15.57446 -15.53491 -15.07173 -14.99936 -14.56684 -14.52026 -14.38014 -14.04387 -13.98217 -13.77285 -13.68441 -13.51252 -13.25190 -13.10298 -12.99429 -12.75290 -12.73197 -12.57321 -12.50271 -12.34675 -12.03999 -11.95412 -11.85692 -11.83736 -11.79500 -11.40776 -11.16300 -11.09345 -10.89477 -10.48722 -9.67889 -9.61928 -9.46477 -8.62629 -7.86126 -5.29393 0.42468 0.51725 1.45229 1.47843 1.56951 1.63807 2.02293 2.51861 2.87415 3.26663 3.47542 3.63616 3.69257 3.75402 3.85347 3.91375 3.98768 4.07187 4.25153 4.27664 4.30446 4.38235 4.41837 4.48054 4.53737 4.59833 4.62412 4.63370 4.69331 4.78441 4.79368 4.82643 4.83401 4.91732 4.95596 4.99369 5.05430 5.09486 5.19352 5.19954 5.28614 5.31475 5.35208 5.40906 5.45001 5.57085 5.57800 5.66714 5.67901 5.71906 5.82906 6.15632 6.41841 6.56738 7.16536 7.18181 7.90590 8.40368 9.19465 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026453 B = 0.002097 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.237991 B =13348.129531 C =13793.388611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.076 4.076 7 C -0.090 4.090 8 C 0.525 3.475 9 O -0.585 6.585 10 N -0.614 5.614 11 C 0.104 3.896 12 C -0.119 4.119 13 C -0.052 4.052 14 C 0.121 3.879 15 C -0.115 4.115 16 C 0.182 3.818 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.060 0.940 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.960 3.040 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.145 3.855 27 C -0.102 4.102 28 C -0.125 4.125 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.010 0.990 47 H 0.250 0.750 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.041 0.959 51 H 0.072 0.928 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 21.823 -13.559 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.076 4.076 7 C -0.129 4.129 8 C 0.316 3.684 9 O -0.465 6.465 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.157 4.157 13 C -0.053 4.053 14 C -0.002 4.002 15 C -0.154 4.154 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.078 0.922 20 C -0.244 4.244 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.200 1.200 26 C 0.020 3.980 27 C -0.141 4.141 28 C -0.143 4.143 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.090 0.910 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.784 22.146 -13.073 26.596 hybrid contribution 0.165 -1.131 1.223 1.674 sum -6.619 21.015 -11.850 25.017 Atomic orbital electron populations 1.20817 0.89754 1.03213 1.03119 1.20227 0.97372 0.93128 0.99251 1.21322 0.94568 0.98141 1.01060 1.21392 0.94694 0.98512 0.99615 1.21218 1.00401 0.92326 1.00671 1.19509 0.93836 0.94409 0.99870 1.20694 1.03689 0.96032 0.92450 1.20791 0.76429 0.79017 0.92193 1.90706 1.52959 1.54716 1.48168 1.48668 1.55642 1.21982 1.08476 1.22285 0.99191 0.89738 0.90536 1.22650 1.00258 0.98397 0.94370 1.20892 0.95891 0.92301 0.96230 1.22169 1.00070 0.92795 0.85163 1.21846 0.98585 0.97568 0.97443 1.20578 0.86542 0.88853 0.98408 1.44294 1.14754 1.30615 1.43666 1.19443 0.92957 1.01496 1.25235 0.92235 1.25689 0.96868 0.99492 1.02332 1.70159 1.03951 1.41277 1.42202 0.85375 0.76871 0.79074 0.79810 1.21245 1.21823 1.19965 1.21057 0.92567 0.92566 0.91789 1.21633 0.95661 0.96118 1.00716 1.21087 0.93761 0.98298 1.01173 0.89934 0.91712 0.90679 0.84338 0.84194 0.85327 0.85903 0.85433 0.89489 0.88591 0.90010 0.90103 0.91336 0.92680 0.90977 0.93890 0.93265 0.97170 0.94132 0.93582 0.95311 0.93982 0.90985 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.10 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 4 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 5 C -0.13 -2.53 9.70 22.27 0.22 -2.32 16 6 C -0.08 -1.57 4.37 -19.87 -0.09 -1.66 16 7 C -0.09 -1.52 5.02 29.10 0.15 -1.38 16 8 C 0.53 13.42 7.84 87.66 0.69 14.11 16 9 O -0.59 -20.55 16.30 -3.05 -0.05 -20.60 16 10 N -0.61 -14.59 3.32 -812.09 -2.69 -17.29 16 11 C 0.10 1.86 6.11 86.76 0.53 2.39 16 12 C -0.12 -2.87 4.91 31.56 0.16 -2.71 16 13 C -0.05 -1.55 0.55 -51.84 -0.03 -1.57 16 14 C 0.12 3.40 5.82 86.63 0.50 3.90 16 15 C -0.11 -4.09 4.84 30.41 0.15 -3.94 16 16 C 0.18 8.30 5.06 86.42 0.44 8.74 16 17 N -0.61 -29.64 2.98 -698.49 -2.08 -31.72 16 18 C -0.26 -14.25 9.57 84.03 0.80 -13.44 16 19 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 20 C -0.05 -2.67 4.90 84.86 0.42 -2.25 16 21 N -0.93 -53.89 11.20 21.65 0.24 -53.65 16 22 Si 0.96 44.82 29.59 68.60 2.03 46.85 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.15 5.71 6.20 86.41 0.54 6.24 16 27 C -0.10 -3.32 4.87 30.42 0.15 -3.17 16 28 C -0.13 -2.62 9.36 22.27 0.21 -2.41 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 32 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.12 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.13 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 2.16 6.18 -2.38 -0.01 2.15 16 40 H 0.08 1.88 7.98 -2.38 -0.02 1.86 16 41 H 0.07 1.88 8.00 -2.38 -0.02 1.86 16 42 H 0.05 1.77 7.94 -2.38 -0.02 1.75 16 43 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 2.62 6.02 -2.39 -0.01 2.61 16 46 H 0.01 0.48 7.62 -2.39 -0.02 0.46 16 47 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 48 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 49 H 0.03 1.09 6.56 -2.39 -0.02 1.07 16 50 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 52 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.78 405.09 4.19 -66.59 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.88 Total: 16.25 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.86 Total: -6.44 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.53 Total: -102.65 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.78 4.19 -66.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040826306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.912 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds