Wall clock time and date at job start Wed Apr 1 2020 01:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.99461 * 2 1 4 4 C 1.38216 * 119.99363 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00187 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99937 * 359.97192 * 5 4 3 7 7 C 1.38208 * 119.99720 * 179.72808 * 2 1 3 8 8 C 1.50703 * 120.00607 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.46679 * 85.00084 * 8 7 2 10 10 O 1.21274 * 120.00346 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99500 * 180.02562 * 9 8 7 12 12 C 1.47084 * 125.62949 * 0.02562 * 11 9 8 13 13 C 1.54451 * 107.29669 * 180.96997 * 12 11 9 14 14 C 1.54396 * 102.87344 * 21.50520 * 13 12 11 15 15 C 1.47579 * 125.62803 * 179.71764 * 11 9 8 16 16 C 1.52106 * 110.51096 * 207.36149 * 14 13 12 17 17 C 1.53352 * 109.44282 * 295.90008 * 16 14 13 18 18 N 1.46925 * 108.68714 * 306.70900 * 17 16 14 19 19 C 1.36936 * 120.54923 * 234.31922 * 18 17 16 20 20 H 1.08005 * 120.00016 * 27.99430 * 19 18 17 21 21 C 1.38816 * 120.00350 * 207.98815 * 19 18 17 22 22 N 1.31618 * 119.99843 * 17.46583 * 21 19 18 23 23 Si 1.86796 * 120.00043 * 197.46508 * 21 19 18 24 24 H 1.48494 * 109.47216 * 90.00237 * 23 21 19 25 25 H 1.48506 * 109.46615 * 209.99975 * 23 21 19 26 26 H 1.48493 * 109.47197 * 329.99698 * 23 21 19 27 27 C 1.46932 * 118.89975 * 54.34345 * 18 17 16 28 28 C 1.52109 * 110.50964 * 83.33098 * 14 13 12 29 29 H 1.08998 * 109.47100 * 90.00515 * 1 2 3 30 30 H 1.08997 * 109.47267 * 329.99701 * 1 2 3 31 31 H 1.09002 * 109.46649 * 209.99866 * 1 2 3 32 32 H 1.07996 * 120.00520 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.99715 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00011 * 179.97438 * 5 4 3 35 35 H 1.07998 * 119.99570 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47261 * 205.00277 * 8 7 2 37 37 H 1.08998 * 109.46827 * 324.99993 * 8 7 2 38 38 H 1.08997 * 109.87467 * 300.39174 * 12 11 9 39 39 H 1.08994 * 109.88039 * 61.54371 * 12 11 9 40 40 H 1.09007 * 110.73729 * 139.84995 * 13 12 11 41 41 H 1.09002 * 110.73239 * 263.15889 * 13 12 11 42 42 H 1.08998 * 110.37574 * 275.52365 * 15 11 9 43 43 H 1.09000 * 110.37329 * 37.87027 * 15 11 9 44 44 H 1.09001 * 109.47776 * 55.89219 * 16 14 13 45 45 H 1.08997 * 109.47608 * 175.91434 * 16 14 13 46 46 H 1.08996 * 109.60064 * 186.94505 * 17 16 14 47 47 H 1.09001 * 109.59725 * 66.46389 * 17 16 14 48 48 H 0.96999 * 120.00024 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.60529 * 185.88923 * 27 18 17 50 50 H 1.08998 * 109.73532 * 65.48553 * 27 18 17 51 51 H 1.08998 * 109.47709 * 184.08474 * 28 14 13 52 52 H 1.09000 * 109.47174 * 304.09511 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0027 7 6 2.1981 -1.1969 0.0057 8 6 1.4446 -2.5021 0.0125 9 6 1.0857 -2.8822 -1.4010 10 8 1.4102 -2.1643 -2.3230 11 7 0.4041 -4.0200 -1.6403 12 6 -0.0499 -4.9775 -0.6203 13 6 -0.7613 -6.1324 -1.3590 14 6 -0.1883 -6.0308 -2.7891 15 6 -0.0154 -4.5076 -2.9686 16 6 -1.1819 -6.5795 -3.8016 17 6 -1.3952 -8.0767 -3.5479 18 7 -0.0855 -8.7423 -3.5294 19 6 0.1632 -9.8121 -4.3472 20 1 -0.3621 -9.9078 -5.2860 21 6 1.0907 -10.7735 -3.9697 22 7 1.4744 -10.8604 -2.7137 23 14 1.7940 -11.9440 -5.2444 24 1 3.0198 -11.3517 -5.8373 25 1 2.1324 -13.2365 -4.5960 26 1 0.7888 -12.1744 -6.3128 27 6 0.9529 -8.2413 -2.6184 28 6 1.1527 -6.7432 -2.8777 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 0.8899 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 1.6583 2.1327 -0.0004 33 1 4.1203 2.1327 0.0001 34 1 5.3517 0.0001 0.0016 35 1 4.1207 -2.1321 0.0031 36 1 2.0697 -3.2802 0.4504 37 1 0.5342 -2.3929 0.6017 38 1 0.8062 -5.3632 -0.0669 39 1 -0.7458 -4.4898 0.0622 40 1 -0.5080 -7.0924 -0.9091 41 1 -1.8407 -5.9803 -1.3641 42 1 -0.9594 -4.0477 -3.2609 43 1 0.7554 -4.2984 -3.7104 44 1 -2.1318 -6.0547 -3.6998 45 1 -0.7922 -6.4336 -4.8090 46 1 -2.0087 -8.4987 -4.3438 47 1 -1.8906 -8.2178 -2.5872 48 1 2.1227 -11.5320 -2.4501 49 1 1.8872 -8.7719 -2.8017 50 1 0.6415 -8.3952 -1.5852 51 1 1.5755 -6.5997 -3.8720 52 1 1.8324 -6.3325 -2.1311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040935297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:38 Heat of formation + Delta-G solvation = 5.208261 kcal Electronic energy + Delta-G solvation = -30430.337930 eV Core-core repulsion = 26587.598959 eV Total energy + Delta-G solvation = -3842.738970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.56988 -39.62528 -38.20727 -35.84112 -33.55316 -33.08165 -32.31043 -30.91107 -30.00164 -29.49445 -28.50298 -27.10909 -26.30145 -24.01880 -23.07595 -22.26570 -22.22270 -21.26009 -20.68469 -19.22437 -18.06616 -17.11863 -16.66823 -16.38864 -16.17586 -15.65150 -15.26203 -14.90826 -14.84878 -14.28713 -14.04696 -13.75741 -13.64498 -13.48650 -13.29782 -13.16146 -13.00643 -12.86130 -12.68382 -12.60787 -12.39059 -12.19426 -12.11262 -11.86773 -11.55927 -11.32556 -11.13444 -11.07270 -11.05310 -10.75345 -10.73151 -10.45547 -10.21857 -10.13420 -9.89618 -9.84460 -9.53854 -9.45076 -8.90607 -8.69885 -8.53319 -8.46225 -6.67910 -5.80750 -3.22553 1.20289 1.28192 2.68154 3.04267 3.37156 3.44498 3.45064 3.66738 4.46736 4.48624 4.56277 4.62982 4.75066 4.79490 4.82797 4.97159 5.00069 5.10145 5.16555 5.24862 5.32032 5.37139 5.40277 5.43709 5.51057 5.53077 5.55332 5.64373 5.66169 5.79102 5.90008 5.92378 5.95347 6.01545 6.07987 6.11118 6.22602 6.27844 6.33261 6.36295 6.38220 6.50271 6.50808 6.61321 6.69465 6.72739 6.84215 6.88697 6.95590 7.34379 7.59780 7.64145 7.78686 8.22506 8.43943 9.20154 9.83718 10.39791 11.27560 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.002347 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.608374 B =11926.075303 C =12584.410366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.102 4.102 7 C -0.064 4.064 8 C -0.102 4.102 9 C 0.529 3.471 10 O -0.537 6.537 11 N -0.615 5.615 12 C 0.101 3.899 13 C -0.124 4.124 14 C -0.055 4.055 15 C 0.114 3.886 16 C -0.118 4.118 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.173 3.827 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.253 0.747 49 H 0.087 0.913 50 H 0.019 0.981 51 H 0.055 0.945 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 20.286 9.447 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.065 4.065 8 C -0.141 4.141 9 C 0.318 3.682 10 O -0.413 6.413 11 N -0.349 5.349 12 C -0.022 4.022 13 C -0.162 4.162 14 C -0.056 4.056 15 C -0.008 4.008 16 C -0.158 4.158 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.047 3.953 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.063 0.937 49 H 0.105 0.895 50 H 0.037 0.963 51 H 0.074 0.926 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.312 20.600 9.042 22.535 hybrid contribution 0.498 -0.669 -0.583 1.018 sum -0.813 19.931 8.459 21.667 Atomic orbital electron populations 1.20859 0.91492 1.02429 1.02659 1.19684 0.95880 0.92608 0.98742 1.20955 0.94290 0.97225 1.01540 1.21095 0.94293 0.97960 1.00316 1.21067 0.99765 0.92462 1.01112 1.21001 0.93407 0.98322 0.99317 1.19144 0.93470 0.93152 1.00726 1.20697 1.01961 0.96278 0.95196 1.20080 0.77447 0.79744 0.90965 1.90715 1.53703 1.50861 1.46060 1.48592 1.55414 1.21760 1.09179 1.22136 0.98676 0.90240 0.91165 1.22718 0.99479 0.98252 0.95706 1.21040 0.97566 0.92088 0.94898 1.22397 0.99567 0.94168 0.84656 1.21853 0.96697 0.98981 0.98268 1.20905 0.88850 0.89820 0.98305 1.44043 1.07430 1.33634 1.46281 1.19199 1.21983 0.98953 0.97940 0.91725 1.25020 1.01886 0.97172 0.95579 1.70023 1.34563 1.35874 1.14302 0.86307 0.79376 0.80176 0.81029 1.21477 1.21799 1.20446 1.20810 0.94638 0.88001 0.91833 1.21996 0.93851 0.99700 1.00800 0.90861 0.91599 0.91577 0.86236 0.86272 0.86158 0.86141 0.88078 0.87932 0.91355 0.91838 0.88826 0.90974 0.91945 0.90753 0.92901 0.92076 0.92823 0.96298 0.93674 0.89519 0.96256 0.92588 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.61 36.01 0.35 -0.74 16 2 C -0.07 -0.77 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.10 -1.16 9.68 -39.58 -0.38 -1.54 16 7 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 8 C -0.10 -1.08 4.52 -29.03 -0.13 -1.21 16 9 C 0.53 7.47 7.84 -10.99 -0.09 7.38 16 10 O -0.54 -9.64 16.30 5.56 0.09 -9.55 16 11 N -0.62 -8.28 3.32 -170.62 -0.57 -8.85 16 12 C 0.10 1.14 6.11 -2.96 -0.02 1.12 16 13 C -0.12 -1.65 4.92 -25.24 -0.12 -1.77 16 14 C -0.06 -0.85 0.55 -153.98 -0.08 -0.93 16 15 C 0.11 1.67 5.82 -2.74 -0.02 1.66 16 16 C -0.12 -1.91 4.84 -27.00 -0.13 -2.04 16 17 C 0.15 2.89 6.24 -3.63 -0.02 2.87 16 18 N -0.59 -14.14 2.98 -172.12 -0.51 -14.65 16 19 C -0.25 -6.72 9.57 -15.06 -0.14 -6.87 16 20 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 22 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 23 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.17 3.90 5.01 -3.63 -0.02 3.88 16 28 C -0.12 -2.28 4.87 -27.01 -0.13 -2.42 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.54 6.02 -51.93 -0.31 0.23 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.10 0.87 6.16 -51.93 -0.32 0.55 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.41 6.18 -51.93 -0.32 1.08 16 41 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 42 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 43 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 44 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 47 H 0.02 0.37 7.62 -51.93 -0.40 -0.03 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.09 2.26 6.02 -51.93 -0.31 1.95 16 50 H 0.02 0.45 6.55 -51.93 -0.34 0.11 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 52 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -31.67 400.82 -11.31 -42.98 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.67 Total: 0.67 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.28 Total: -8.11 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.46 Total: -48.49 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.67 -11.31 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040935297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.188 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds