Wall clock time and date at job start Wed Apr 1 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.99461 * 2 1 4 4 C 1.38216 * 119.99363 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00187 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99937 * 359.97192 * 5 4 3 7 7 C 1.38208 * 119.99720 * 179.72808 * 2 1 3 8 8 C 1.50703 * 120.00607 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.46679 * 85.00084 * 8 7 2 10 10 O 1.21274 * 120.00346 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99500 * 180.02562 * 9 8 7 12 12 C 1.47084 * 125.62949 * 0.02562 * 11 9 8 13 13 C 1.54451 * 107.29669 * 180.96997 * 12 11 9 14 14 C 1.54396 * 102.87344 * 21.50520 * 13 12 11 15 15 C 1.47579 * 125.62803 * 179.71764 * 11 9 8 16 16 C 1.52106 * 110.51096 * 207.36149 * 14 13 12 17 17 C 1.53352 * 109.44282 * 295.90008 * 16 14 13 18 18 N 1.46925 * 108.68714 * 306.70900 * 17 16 14 19 19 C 1.36936 * 120.54923 * 234.31922 * 18 17 16 20 20 H 1.08005 * 120.00016 * 27.99430 * 19 18 17 21 21 C 1.38816 * 120.00350 * 207.98815 * 19 18 17 22 22 N 1.31618 * 119.99843 * 17.46583 * 21 19 18 23 23 Si 1.86796 * 120.00043 * 197.46508 * 21 19 18 24 24 H 1.48494 * 109.47216 * 90.00237 * 23 21 19 25 25 H 1.48506 * 109.46615 * 209.99975 * 23 21 19 26 26 H 1.48493 * 109.47197 * 329.99698 * 23 21 19 27 27 C 1.46932 * 118.89975 * 54.34345 * 18 17 16 28 28 C 1.52109 * 110.50964 * 83.33098 * 14 13 12 29 29 H 1.08998 * 109.47100 * 90.00515 * 1 2 3 30 30 H 1.08997 * 109.47267 * 329.99701 * 1 2 3 31 31 H 1.09002 * 109.46649 * 209.99866 * 1 2 3 32 32 H 1.07996 * 120.00520 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.99715 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00011 * 179.97438 * 5 4 3 35 35 H 1.07998 * 119.99570 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47261 * 205.00277 * 8 7 2 37 37 H 1.08998 * 109.46827 * 324.99993 * 8 7 2 38 38 H 1.08997 * 109.87467 * 300.39174 * 12 11 9 39 39 H 1.08994 * 109.88039 * 61.54371 * 12 11 9 40 40 H 1.09007 * 110.73729 * 139.84995 * 13 12 11 41 41 H 1.09002 * 110.73239 * 263.15889 * 13 12 11 42 42 H 1.08998 * 110.37574 * 275.52365 * 15 11 9 43 43 H 1.09000 * 110.37329 * 37.87027 * 15 11 9 44 44 H 1.09001 * 109.47776 * 55.89219 * 16 14 13 45 45 H 1.08997 * 109.47608 * 175.91434 * 16 14 13 46 46 H 1.08996 * 109.60064 * 186.94505 * 17 16 14 47 47 H 1.09001 * 109.59725 * 66.46389 * 17 16 14 48 48 H 0.96999 * 120.00024 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.60529 * 185.88923 * 27 18 17 50 50 H 1.08998 * 109.73532 * 65.48553 * 27 18 17 51 51 H 1.08998 * 109.47709 * 184.08474 * 28 14 13 52 52 H 1.09000 * 109.47174 * 304.09511 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0027 7 6 2.1981 -1.1969 0.0057 8 6 1.4446 -2.5021 0.0125 9 6 1.0857 -2.8822 -1.4010 10 8 1.4102 -2.1643 -2.3230 11 7 0.4041 -4.0200 -1.6403 12 6 -0.0499 -4.9775 -0.6203 13 6 -0.7613 -6.1324 -1.3590 14 6 -0.1883 -6.0308 -2.7891 15 6 -0.0154 -4.5076 -2.9686 16 6 -1.1819 -6.5795 -3.8016 17 6 -1.3952 -8.0767 -3.5479 18 7 -0.0855 -8.7423 -3.5294 19 6 0.1632 -9.8121 -4.3472 20 1 -0.3621 -9.9078 -5.2860 21 6 1.0907 -10.7735 -3.9697 22 7 1.4744 -10.8604 -2.7137 23 14 1.7940 -11.9440 -5.2444 24 1 3.0198 -11.3517 -5.8373 25 1 2.1324 -13.2365 -4.5960 26 1 0.7888 -12.1744 -6.3128 27 6 0.9529 -8.2413 -2.6184 28 6 1.1527 -6.7432 -2.8777 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 0.8899 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 1.6583 2.1327 -0.0004 33 1 4.1203 2.1327 0.0001 34 1 5.3517 0.0001 0.0016 35 1 4.1207 -2.1321 0.0031 36 1 2.0697 -3.2802 0.4504 37 1 0.5342 -2.3929 0.6017 38 1 0.8062 -5.3632 -0.0669 39 1 -0.7458 -4.4898 0.0622 40 1 -0.5080 -7.0924 -0.9091 41 1 -1.8407 -5.9803 -1.3641 42 1 -0.9594 -4.0477 -3.2609 43 1 0.7554 -4.2984 -3.7104 44 1 -2.1318 -6.0547 -3.6998 45 1 -0.7922 -6.4336 -4.8090 46 1 -2.0087 -8.4987 -4.3438 47 1 -1.8906 -8.2178 -2.5872 48 1 2.1227 -11.5320 -2.4501 49 1 1.8872 -8.7719 -2.8017 50 1 0.6415 -8.3952 -1.5852 51 1 1.5755 -6.5997 -3.8720 52 1 1.8324 -6.3325 -2.1311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040935297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:37 Heat of formation + Delta-G solvation = -10.605407 kcal Electronic energy + Delta-G solvation = -30431.023662 eV Core-core repulsion = 26587.598959 eV Total energy + Delta-G solvation = -3843.424702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66173 -40.58291 -39.36135 -37.33826 -34.80283 -34.23796 -33.14206 -32.53022 -31.63759 -30.60136 -29.54537 -28.18517 -27.37443 -25.68923 -24.22413 -23.75399 -23.06849 -22.55965 -21.75723 -20.30028 -19.53637 -18.50449 -17.87162 -17.42303 -17.13614 -16.83132 -16.59475 -16.18079 -15.78529 -15.68241 -15.48172 -15.08079 -15.00764 -14.57408 -14.48805 -14.33118 -14.04383 -13.94940 -13.78466 -13.64048 -13.49453 -13.26463 -13.21180 -12.99632 -12.89098 -12.72757 -12.59494 -12.50843 -12.22207 -12.14893 -11.85092 -11.82710 -11.79004 -11.73261 -11.42566 -11.16397 -11.09091 -10.88634 -10.49422 -9.68803 -9.61093 -9.46938 -8.63221 -7.86345 -5.29846 0.42427 0.51077 1.45147 1.47600 1.55124 1.63675 2.03359 2.51413 2.87587 3.26483 3.47401 3.63611 3.69029 3.76540 3.86930 3.92528 3.97841 4.08859 4.14366 4.27663 4.29547 4.33682 4.39988 4.45023 4.53868 4.54928 4.64936 4.72439 4.74470 4.76065 4.79178 4.82289 4.83831 4.91098 4.93784 4.98126 5.05032 5.09605 5.17093 5.24252 5.28931 5.31529 5.36693 5.41897 5.44036 5.56718 5.58464 5.62756 5.67434 5.73864 5.82136 6.15348 6.41507 6.56349 7.16891 7.17657 7.90586 8.40210 9.19210 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.002347 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.608374 B =11926.075303 C =12584.410366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.094 4.094 9 C 0.527 3.473 10 O -0.582 6.582 11 N -0.615 5.615 12 C 0.102 3.898 13 C -0.119 4.119 14 C -0.053 4.053 15 C 0.121 3.879 16 C -0.108 4.108 17 C 0.144 3.856 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.063 0.937 21 C -0.050 4.050 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.183 3.817 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.249 0.751 49 H 0.045 0.955 50 H 0.012 0.988 51 H 0.034 0.966 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 22.029 10.535 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.141 4.141 7 C -0.085 4.085 8 C -0.133 4.133 9 C 0.318 3.682 10 O -0.462 6.462 11 N -0.349 5.349 12 C -0.020 4.020 13 C -0.156 4.156 14 C -0.054 4.054 15 C -0.001 4.001 16 C -0.147 4.147 17 C 0.019 3.981 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.058 3.942 28 C -0.148 4.148 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.030 0.970 51 H 0.053 0.947 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.689 22.346 10.139 24.685 hybrid contribution 0.911 -1.185 -0.941 1.766 sum -1.778 21.160 9.198 23.141 Atomic orbital electron populations 1.20864 0.90310 1.03942 1.02029 1.20019 0.97014 0.92815 0.98741 1.21302 0.94759 0.97902 1.01108 1.21441 0.94528 0.98785 0.99518 1.21369 1.00830 0.92475 1.00888 1.21244 0.93829 0.99036 0.99994 1.19374 0.93792 0.93907 1.01387 1.20718 1.03288 0.96266 0.93009 1.20682 0.76492 0.79153 0.91918 1.90694 1.55468 1.52339 1.47732 1.48663 1.55172 1.21920 1.09106 1.22272 0.99621 0.89326 0.90742 1.22667 1.00923 0.98269 0.93752 1.20912 0.95565 0.92325 0.96594 1.22202 0.99583 0.93257 0.85099 1.21727 0.98575 0.96650 0.97744 1.21064 0.86833 0.91625 0.98559 1.44301 1.09465 1.33497 1.46123 1.19487 1.21691 0.99491 0.98298 0.91941 1.25699 1.02667 0.99016 0.97136 1.70155 1.35206 1.36624 1.15788 0.85374 0.78566 0.78094 0.79100 1.21711 1.22073 1.19399 1.20563 0.92537 0.89966 0.91171 1.21750 0.96130 0.97203 0.99715 0.92395 0.89787 0.90458 0.84340 0.84020 0.84534 0.85793 0.86539 0.85331 0.90668 0.88189 0.90651 0.88752 0.90342 0.93140 0.89272 0.93346 0.93175 0.95470 0.94200 0.93664 0.97017 0.94669 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.61 71.24 0.68 -1.19 16 2 C -0.09 -1.78 5.88 -19.86 -0.12 -1.90 16 3 C -0.13 -2.50 9.70 22.27 0.22 -2.28 16 4 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 5 C -0.14 -2.70 10.05 22.27 0.22 -2.48 16 6 C -0.12 -2.71 9.68 22.27 0.22 -2.49 16 7 C -0.08 -1.86 4.37 -19.87 -0.09 -1.95 16 8 C -0.09 -1.77 4.52 29.10 0.13 -1.64 16 9 C 0.53 14.03 7.84 87.66 0.69 14.71 16 10 O -0.58 -20.74 16.30 -3.01 -0.05 -20.79 16 11 N -0.62 -15.13 3.32 -812.12 -2.69 -17.82 16 12 C 0.10 1.96 6.11 86.76 0.53 2.49 16 13 C -0.12 -2.81 4.92 31.56 0.16 -2.66 16 14 C -0.05 -1.55 0.55 -51.84 -0.03 -1.58 16 15 C 0.12 3.35 5.82 86.63 0.50 3.85 16 16 C -0.11 -3.27 4.84 30.42 0.15 -3.13 16 17 C 0.14 5.53 6.24 86.42 0.54 6.07 16 18 N -0.61 -29.59 2.98 -698.48 -2.08 -31.67 16 19 C -0.26 -14.12 9.57 84.03 0.80 -13.32 16 20 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 21 C -0.05 -2.76 4.90 84.86 0.42 -2.35 16 22 N -0.93 -54.37 11.20 21.65 0.24 -54.13 16 23 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.18 8.48 5.01 86.41 0.43 8.91 16 28 C -0.11 -4.04 4.87 30.41 0.15 -3.89 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.08 1.03 6.02 -2.39 -0.01 1.02 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.12 1.82 8.05 -2.39 -0.02 1.80 16 37 H 0.13 1.71 6.16 -2.39 -0.01 1.69 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 2.12 6.18 -2.38 -0.01 2.11 16 41 H 0.09 1.86 7.98 -2.39 -0.02 1.84 16 42 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 43 H 0.05 1.64 7.94 -2.39 -0.02 1.62 16 44 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.92 7.93 -2.39 -0.02 1.91 16 47 H 0.03 1.01 7.62 -2.39 -0.02 0.99 16 48 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.04 2.46 6.02 -2.38 -0.01 2.45 16 50 H 0.01 0.56 6.55 -2.39 -0.02 0.54 16 51 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.06 1.95 7.82 -2.39 -0.02 1.93 16 Total: -1.00 -71.20 400.82 4.17 -67.03 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.89 Total: 17.16 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.83 Total: -6.85 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.53 Total: -103.62 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -71.20 4.17 -67.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040935297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.427 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds