Wall clock time and date at job start Wed Apr 1 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99863 * 2 1 4 4 C 1.38228 * 119.99698 * 180.24337 * 3 2 1 5 5 C 1.38236 * 120.00473 * 359.79409 * 4 3 2 6 6 C 1.38234 * 119.99800 * 359.95604 * 5 4 3 7 7 C 1.50699 * 120.00015 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00077 * 179.75867 * 2 1 3 9 9 C 1.50698 * 120.00288 * 0.02562 * 8 2 1 10 10 C 1.50702 * 109.47154 * 269.72389 * 9 8 2 11 11 O 1.21276 * 120.00099 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.48252 * 126.99993 * 0.02562 * 12 10 9 14 14 C 1.55258 * 103.44533 * 141.54334 * 13 12 10 15 15 C 1.53232 * 102.46444 * 36.19500 * 14 13 12 16 16 C 1.53716 * 111.52038 * 101.30062 * 15 14 13 17 17 C 1.54585 * 102.78206 * 86.20467 * 16 15 14 18 18 N 1.47135 * 107.32400 * 20.89322 * 17 16 15 19 19 C 1.36945 * 125.60369 * 180.91585 * 18 17 16 20 20 H 1.08000 * 119.99441 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00031 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46722 * 90.00437 * 23 21 19 25 25 H 1.48497 * 109.47157 * 210.00127 * 23 21 19 26 26 H 1.48494 * 109.47346 * 330.00290 * 23 21 19 27 27 C 1.47699 * 108.78909 * 1.17580 * 18 17 16 28 28 C 1.47880 * 127.00212 * 179.97438 * 12 10 9 29 29 H 1.08996 * 109.47847 * 270.23406 * 1 2 3 30 30 H 1.08997 * 109.47361 * 30.23973 * 1 2 3 31 31 H 1.09003 * 109.46954 * 150.23670 * 1 2 3 32 32 H 1.07999 * 119.99943 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.99955 * 179.76671 * 4 3 2 34 34 H 1.07999 * 119.99968 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46951 * 270.01752 * 7 6 5 36 36 H 1.08997 * 109.47210 * 30.02401 * 7 6 5 37 37 H 1.09011 * 109.46864 * 150.01658 * 7 6 5 38 38 H 1.08999 * 109.47755 * 149.72385 * 9 8 2 39 39 H 1.09000 * 109.47144 * 29.72212 * 9 8 2 40 40 H 1.09004 * 110.62071 * 260.02516 * 13 12 10 41 41 H 1.08992 * 110.62671 * 22.88967 * 13 12 10 42 42 H 1.09001 * 110.80931 * 277.95210 * 14 13 12 43 43 H 1.09006 * 110.81254 * 154.44059 * 14 13 12 44 44 H 1.09001 * 110.75138 * 327.88759 * 16 15 14 45 45 H 1.08998 * 110.75155 * 204.52901 * 16 15 14 46 46 H 1.08995 * 109.87491 * 261.46040 * 17 16 15 47 47 H 1.08998 * 109.99302 * 140.38975 * 17 16 15 48 48 H 0.96998 * 120.00243 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.39332 * 95.95006 * 27 18 17 50 50 H 1.08993 * 110.39685 * 218.33942 * 27 18 17 51 51 H 1.09002 * 110.04433 * 85.88169 * 28 12 10 52 52 H 1.08998 * 110.09490 * 324.43770 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0051 5 6 4.2717 0.0000 -0.0059 6 6 3.5806 -1.1971 -0.0006 7 6 4.3341 -2.5022 -0.0009 8 6 2.1982 -1.1971 0.0050 9 6 1.4448 -2.5022 0.0100 10 6 1.1990 -2.9350 1.4324 11 8 1.5969 -2.2513 2.3517 12 7 0.5370 -4.0820 1.6830 13 6 -0.0136 -5.0306 0.6856 14 6 0.2692 -6.4212 1.3154 15 6 0.0598 -6.1561 2.8100 16 6 -1.3120 -6.6610 3.2855 17 6 -1.0330 -8.1440 3.6211 18 7 0.4164 -8.2797 3.8348 19 6 1.0723 -9.4435 4.1361 20 1 2.1433 -9.4392 4.2750 21 6 0.3607 -10.6285 4.2628 22 7 -0.9445 -10.6338 4.0929 23 14 1.2556 -12.2161 4.6730 24 1 1.3149 -12.3840 6.1473 25 1 0.5285 -13.3634 4.0730 26 1 2.6346 -12.1628 4.1249 27 6 1.0467 -6.9533 3.6772 28 6 0.2128 -4.6511 3.0089 29 1 -0.3634 0.0042 1.0276 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 1.6581 2.1325 0.0004 33 1 4.1205 2.1325 -0.0089 34 1 5.3517 0.0001 -0.0103 35 1 4.5119 -2.8188 -1.0286 36 1 5.2883 -2.3709 0.5092 37 1 3.7468 -3.2609 0.5166 38 1 2.0319 -3.2627 -0.5049 39 1 0.4904 -2.3727 -0.5004 40 1 -1.0854 -4.8767 0.5602 41 1 0.5024 -4.9265 -0.2689 42 1 1.2943 -6.7347 1.1177 43 1 -0.4410 -7.1633 0.9505 44 1 -2.0514 -6.5779 2.4890 45 1 -1.6366 -6.1186 4.1734 46 1 -1.3460 -8.7770 2.7908 47 1 -1.5693 -8.4285 4.5264 48 1 -1.4418 -11.4620 4.1811 49 1 1.1742 -6.4755 4.6486 50 1 2.0070 -7.0469 3.1702 51 1 -0.7203 -4.2267 3.3796 52 1 1.0207 -4.4472 3.7116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041331691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:54 Heat of formation + Delta-G solvation = 12.962079 kcal Electronic energy + Delta-G solvation = -30344.446792 eV Core-core repulsion = 26502.044052 eV Total energy + Delta-G solvation = -3842.402740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.63 seconds Orbital eigenvalues (eV) -40.59256 -39.67031 -38.17120 -35.65622 -33.75267 -33.52260 -32.63296 -30.43370 -29.41007 -29.06948 -28.37430 -26.86008 -26.80831 -25.34313 -23.68416 -22.74466 -21.28150 -20.85535 -20.22968 -19.18936 -18.68649 -17.10087 -16.83664 -16.49424 -16.24061 -15.61970 -15.25494 -14.70670 -14.65322 -14.33570 -13.97630 -13.85155 -13.76900 -13.37873 -13.19316 -13.14022 -13.08639 -12.89171 -12.76055 -12.61790 -12.36181 -12.16652 -11.95476 -11.78999 -11.66820 -11.50053 -11.26919 -11.12567 -11.05288 -11.00078 -10.88797 -10.78363 -10.19977 -10.03675 -9.91657 -9.85663 -9.72980 -9.63484 -8.70810 -8.65777 -8.61894 -8.58204 -6.82887 -5.71669 -3.04641 1.20469 1.26066 2.67579 2.99982 3.39556 3.44878 3.46327 3.62201 4.43443 4.48157 4.57359 4.60374 4.74077 4.78833 4.80043 4.89654 4.99477 5.04056 5.11616 5.19007 5.25157 5.30592 5.42868 5.44036 5.46639 5.48544 5.50160 5.52130 5.58379 5.67581 5.72671 5.78376 5.84244 5.97128 5.99032 6.03282 6.07149 6.09718 6.24150 6.34886 6.35483 6.40097 6.41706 6.51222 6.53097 6.56689 6.74841 6.84067 6.90064 7.55546 7.60606 7.61727 7.82085 8.22058 8.25285 9.22038 9.81977 10.48186 11.39983 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.002313 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.932207 B =12102.413258 C =12777.047078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.066 4.066 7 C -0.118 4.118 8 C -0.065 4.065 9 C -0.104 4.104 10 C 0.533 3.467 11 O -0.534 6.534 12 N -0.621 5.621 13 C 0.096 3.904 14 C -0.107 4.107 15 C -0.085 4.085 16 C -0.132 4.132 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.150 3.850 28 C 0.123 3.877 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.252 0.748 49 H 0.020 0.980 50 H 0.039 0.961 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 20.657 -13.053 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.175 4.175 8 C -0.065 4.065 9 C -0.143 4.143 10 C 0.321 3.679 11 O -0.411 6.411 12 N -0.356 5.356 13 C -0.026 4.026 14 C -0.145 4.145 15 C -0.087 4.087 16 C -0.170 4.170 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.024 3.976 28 C 0.001 3.999 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.057 0.943 51 H 0.084 0.916 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.244 20.877 -12.543 24.571 hybrid contribution 0.373 -0.931 0.332 1.056 sum 3.617 19.947 -12.211 23.666 Atomic orbital electron populations 1.20867 0.91456 1.02500 1.02651 1.19673 0.95838 0.92567 0.98735 1.20920 0.94264 0.97188 1.02189 1.21065 0.94283 0.97829 1.00050 1.20944 0.99586 0.91934 1.02039 1.19705 0.92942 0.95518 0.98435 1.20845 1.00126 0.94413 1.02091 1.18960 0.92766 0.93123 1.01669 1.20723 1.02209 0.96269 0.95110 1.20043 0.77343 0.79482 0.91009 1.90724 1.50758 1.53035 1.46578 1.49020 1.55799 1.21775 1.09016 1.22739 0.98722 0.89143 0.92034 1.22462 1.03022 0.95016 0.94016 1.21640 0.98566 0.92531 0.95966 1.22824 0.94370 1.00067 0.99765 1.21192 0.84696 0.88527 1.00096 1.44548 1.02953 1.02451 1.83123 1.19051 0.91462 0.84428 1.40471 0.90551 1.24781 0.95783 0.97758 1.02157 1.69958 1.05113 1.25909 1.56070 0.86134 0.78490 0.83233 0.78002 1.21650 1.21712 1.20742 1.21443 0.94067 0.86864 0.95216 1.21915 1.00852 0.92392 0.84751 0.90898 0.91541 0.91479 0.86269 0.86259 0.86216 0.91045 0.91333 0.91484 0.88002 0.87935 0.90908 0.90563 0.90730 0.89519 0.91952 0.92285 0.93573 0.94009 0.93808 0.96266 0.94300 0.91595 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.60 36.01 0.35 -0.71 16 2 C -0.07 -0.75 5.88 -104.62 -0.62 -1.36 16 3 C -0.13 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.11 -1.12 10.05 -39.59 -0.40 -1.52 16 5 C -0.13 -1.32 9.70 -39.58 -0.38 -1.70 16 6 C -0.07 -0.75 5.88 -104.62 -0.62 -1.37 16 7 C -0.12 -1.16 9.19 36.00 0.33 -0.83 16 8 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 9 C -0.10 -1.08 3.68 -29.03 -0.11 -1.18 16 10 C 0.53 7.40 7.48 -10.98 -0.08 7.32 16 11 O -0.53 -9.55 16.39 5.56 0.09 -9.46 16 12 N -0.62 -8.27 3.31 -170.00 -0.56 -8.83 16 13 C 0.10 1.05 6.96 -1.88 -0.01 1.04 16 14 C -0.11 -1.51 6.12 -25.42 -0.16 -1.67 16 15 C -0.09 -1.39 0.75 -153.88 -0.12 -1.50 16 16 C -0.13 -2.29 5.65 -25.53 -0.14 -2.44 16 17 C 0.18 4.18 5.33 -2.86 -0.02 4.16 16 18 N -0.60 -15.00 3.41 -170.37 -0.58 -15.58 16 19 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.68 10.30 55.49 0.57 -26.11 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C 0.15 3.05 6.10 -3.03 -0.02 3.03 16 28 C 0.12 1.85 6.31 -3.50 -0.02 1.82 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.53 5.94 -51.93 -0.31 0.22 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.74 6.37 -51.92 -0.33 0.41 16 38 H 0.10 0.90 6.46 -51.93 -0.34 0.56 16 39 H 0.10 0.85 5.94 -51.93 -0.31 0.55 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.65 7.24 -51.93 -0.38 0.27 16 42 H 0.07 1.11 7.66 -51.93 -0.40 0.71 16 43 H 0.09 1.28 7.80 -51.93 -0.40 0.87 16 44 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 45 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 46 H 0.05 1.18 7.38 -51.93 -0.38 0.79 16 47 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 50 H 0.04 0.79 7.72 -51.93 -0.40 0.39 16 51 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 52 H 0.08 1.26 7.54 -51.93 -0.39 0.86 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -32.88 402.63 -11.11 -44.00 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.58 Total: -0.53 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.10 Total: -6.50 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.57 Total: -50.52 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.88 -11.11 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.63 seconds