Wall clock time and date at job start Wed Apr 1 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38240 * 119.99962 * 2 1 4 4 C 1.38237 * 119.99725 * 180.22983 * 3 2 1 5 5 C 1.38238 * 119.99929 * 359.81504 * 4 3 2 6 6 C 1.38235 * 120.00378 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00402 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00041 * 179.79201 * 2 1 3 9 9 C 1.50706 * 119.99927 * 359.97438 * 8 2 1 10 10 C 1.50697 * 109.47315 * 269.73333 * 9 8 2 11 11 O 1.21281 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99972 * 180.02562 * 10 9 8 13 13 C 1.47618 * 126.91887 * 0.02562 * 12 10 9 14 14 C 1.54343 * 107.05172 * 204.98444 * 13 12 10 15 15 C 1.53093 * 104.72930 * 357.71199 * 14 13 12 16 16 C 1.53640 * 111.77973 * 218.76906 * 15 14 13 17 17 C 1.55195 * 101.41408 * 272.09087 * 16 15 14 18 18 N 1.47566 * 105.00085 * 324.51011 * 17 16 15 19 19 C 1.36938 * 125.66949 * 203.83397 * 18 17 16 20 20 H 1.07998 * 119.99909 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00222 * 0.03273 * 19 18 17 22 22 N 1.31621 * 119.99506 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46826 * 119.99755 * 23 21 19 26 26 H 1.48497 * 109.46975 * 239.99862 * 23 21 19 27 27 C 1.47405 * 108.65549 * 23.86300 * 18 17 16 28 28 C 1.48409 * 126.91988 * 179.97438 * 12 10 9 29 29 H 1.09002 * 109.46706 * 270.20932 * 1 2 3 30 30 H 1.08998 * 109.46812 * 30.20727 * 1 2 3 31 31 H 1.08998 * 109.47368 * 150.21023 * 1 2 3 32 32 H 1.07996 * 120.00292 * 0.07079 * 3 2 1 33 33 H 1.07997 * 120.00002 * 179.83844 * 4 3 2 34 34 H 1.08000 * 120.00067 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47059 * 269.98041 * 7 6 5 36 36 H 1.09003 * 109.46800 * 29.98205 * 7 6 5 37 37 H 1.09004 * 109.47099 * 149.97807 * 7 6 5 38 38 H 1.09001 * 109.46962 * 149.72780 * 9 8 2 39 39 H 1.09005 * 109.46971 * 29.73000 * 9 8 2 40 40 H 1.09002 * 109.91435 * 85.62905 * 13 12 10 41 41 H 1.09001 * 109.91854 * 324.33731 * 13 12 10 42 42 H 1.09002 * 110.40541 * 116.55967 * 14 13 12 43 43 H 1.08998 * 110.40672 * 238.86652 * 14 13 12 44 44 H 1.09001 * 111.03286 * 30.11429 * 16 15 14 45 45 H 1.08997 * 111.03929 * 154.05271 * 16 15 14 46 46 H 1.08999 * 110.32886 * 205.63343 * 17 16 15 47 47 H 1.08996 * 110.42474 * 83.43608 * 17 16 15 48 48 H 0.97000 * 119.99151 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.98284 * 238.53908 * 27 18 17 50 50 H 1.08995 * 110.02197 * 117.24788 * 27 18 17 51 51 H 1.09000 * 110.68222 * 260.85401 * 28 12 10 52 52 H 1.08997 * 110.67922 * 24.02597 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1972 -0.0013 7 6 4.3340 -2.5023 -0.0018 8 6 2.1982 -1.1971 0.0043 9 6 1.4447 -2.5023 0.0097 10 6 1.1998 -2.9352 1.4322 11 8 1.5983 -2.2515 2.3513 12 7 0.5387 -4.0826 1.6831 13 6 -0.0084 -5.0264 0.6886 14 6 -1.1641 -5.7862 1.3737 15 6 -1.1837 -5.2531 2.8087 16 6 -1.4795 -6.3658 3.8261 17 6 -3.0308 -6.3435 3.8632 18 7 -3.3963 -4.9223 3.7074 19 6 -4.5681 -4.3489 4.1234 20 1 -4.7410 -3.2952 3.9616 21 6 -5.5338 -5.1220 4.7534 22 7 -5.3232 -6.4062 4.9503 23 14 -7.1322 -4.3396 5.3216 24 1 -7.1224 -2.8933 4.9849 25 1 -8.2754 -4.9991 4.6409 26 1 -7.2689 -4.5044 6.7910 27 6 -2.2904 -4.2228 3.0288 28 6 0.2153 -4.6522 3.0148 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8918 -0.5105 32 1 1.6583 2.1325 0.0012 33 1 4.1206 2.1324 -0.0074 34 1 5.3517 -0.0001 -0.0091 35 1 4.5118 -2.8189 -1.0295 36 1 5.2883 -2.3711 0.5083 37 1 3.7468 -3.2610 0.5157 38 1 2.0314 -3.2627 -0.5057 39 1 0.4899 -2.3726 -0.5001 40 1 0.7654 -5.7286 0.3782 41 1 -0.3847 -4.4786 -0.1754 42 1 -2.1090 -5.5704 0.8751 43 1 -0.9692 -6.8586 1.3693 44 1 -1.1105 -7.3282 3.4716 45 1 -1.0612 -6.1239 4.8031 46 1 -3.3922 -6.7250 4.8181 47 1 -3.4394 -6.9319 3.0418 48 1 -5.9982 -6.9464 5.3901 49 1 -1.9234 -3.4100 3.6555 50 1 -2.6296 -3.8299 2.0703 51 1 0.9306 -5.4289 3.2853 52 1 0.1906 -3.8692 3.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041331693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:01 Heat of formation + Delta-G solvation = 14.074243 kcal Electronic energy + Delta-G solvation = -30553.699605 eV Core-core repulsion = 26711.345092 eV Total energy + Delta-G solvation = -3842.354512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.57550 -39.65557 -38.11624 -35.64502 -33.71447 -33.49037 -32.65540 -30.50924 -29.40714 -29.12791 -28.17727 -26.78850 -26.76316 -25.44227 -23.75639 -22.61494 -21.25997 -20.81769 -20.31231 -19.18522 -18.61730 -17.10392 -16.83081 -16.44065 -16.22361 -15.49855 -15.27104 -14.75078 -14.61959 -14.24695 -14.15453 -13.95974 -13.77870 -13.33960 -13.09699 -13.06937 -13.01929 -12.86488 -12.81331 -12.63435 -12.37782 -12.09140 -11.81880 -11.72568 -11.62356 -11.50988 -11.29980 -11.16992 -11.02487 -10.95665 -10.86494 -10.80539 -10.20098 -10.04411 -9.94673 -9.84994 -9.74300 -9.49588 -8.67417 -8.66634 -8.61957 -8.54504 -6.82595 -5.65483 -3.06296 1.23849 1.29772 2.70914 3.02407 3.39714 3.45632 3.47903 3.65544 4.46942 4.48128 4.57587 4.63298 4.73208 4.77926 4.84642 4.92493 5.02097 5.06416 5.14758 5.19264 5.27843 5.31818 5.40556 5.41787 5.48451 5.51437 5.52654 5.57228 5.63086 5.68575 5.78130 5.78768 5.84280 5.95478 5.97571 6.02203 6.09380 6.12371 6.22533 6.36806 6.38235 6.39010 6.43969 6.55469 6.56965 6.63516 6.78089 6.87122 6.93621 7.50506 7.63144 7.63621 7.85440 8.25118 8.35891 9.22588 9.83077 10.48360 11.38751 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.002625 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.732062 B =10662.602443 C =11777.068689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.065 4.065 9 C -0.104 4.104 10 C 0.534 3.466 11 O -0.532 6.532 12 N -0.621 5.621 13 C 0.101 3.899 14 C -0.115 4.115 15 C -0.082 4.082 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.155 3.845 28 C 0.121 3.879 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.012 0.988 48 H 0.251 0.749 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.070 0.930 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.227 5.952 -14.089 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.172 4.172 8 C -0.066 4.066 9 C -0.143 4.143 10 C 0.322 3.678 11 O -0.409 6.409 12 N -0.356 5.356 13 C -0.022 4.022 14 C -0.153 4.153 15 C -0.083 4.083 16 C -0.170 4.170 17 C 0.030 3.970 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.029 3.971 28 C -0.001 4.001 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.030 0.970 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.038 0.962 51 H 0.088 0.912 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.293 6.371 -13.520 23.622 hybrid contribution -0.885 0.360 0.213 0.979 sum 17.408 6.732 -13.307 22.922 Atomic orbital electron populations 1.20893 0.91225 1.02585 1.02980 1.19716 0.95975 0.92543 0.98253 1.20947 0.94252 0.97283 1.01989 1.21064 0.94287 0.97815 1.00063 1.20916 0.99475 0.91953 1.02287 1.19665 0.92913 0.95430 0.98834 1.20820 0.99985 0.94498 1.01944 1.18963 0.92727 0.93169 1.01710 1.20726 1.02248 0.96207 0.95124 1.20027 0.77476 0.79256 0.91005 1.90729 1.50747 1.52808 1.46584 1.48966 1.55959 1.21710 1.08954 1.22244 0.96131 0.91807 0.92022 1.22366 0.98059 0.99650 0.95254 1.21620 0.94039 0.97474 0.95211 1.22874 1.01236 0.95625 0.97314 1.21955 0.86864 0.85400 1.02768 1.44652 1.15441 1.05207 1.67769 1.19124 0.91638 0.93414 1.30603 0.90562 1.24773 0.98760 0.95788 1.01416 1.69811 1.34140 1.04802 1.48430 0.86013 0.83241 0.78195 0.78173 1.20549 1.21783 1.21745 1.21066 0.87717 0.93022 0.95261 1.22404 0.95060 0.97536 0.85078 0.90617 0.91469 0.91426 0.86192 0.86266 0.86300 0.91156 0.91447 0.91658 0.88184 0.87814 0.91630 0.91082 0.90068 0.90432 0.91975 0.91867 0.87765 0.96953 0.93830 0.95888 0.96211 0.91210 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.60 36.01 0.35 -0.95 16 2 C -0.06 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.13 -1.40 9.70 -39.58 -0.38 -1.78 16 4 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.07 -0.78 5.88 -104.62 -0.62 -1.39 16 7 C -0.12 -1.06 9.19 36.00 0.33 -0.73 16 8 C -0.07 -0.79 4.37 -104.62 -0.46 -1.25 16 9 C -0.10 -1.13 3.82 -29.03 -0.11 -1.24 16 10 C 0.53 7.69 7.48 -10.99 -0.08 7.61 16 11 O -0.53 -9.83 16.26 5.56 0.09 -9.74 16 12 N -0.62 -8.46 3.31 -170.01 -0.56 -9.02 16 13 C 0.10 1.10 6.77 -2.73 -0.02 1.08 16 14 C -0.12 -1.54 6.04 -25.98 -0.16 -1.70 16 15 C -0.08 -1.35 0.68 -153.89 -0.11 -1.46 16 16 C -0.13 -2.35 6.05 -25.24 -0.15 -2.51 16 17 C 0.15 3.65 5.84 -2.30 -0.01 3.63 16 18 N -0.60 -15.37 3.41 -170.41 -0.58 -15.95 16 19 C -0.22 -6.14 10.28 -15.06 -0.15 -6.29 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.74 10.10 55.49 0.56 -26.18 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.16 3.25 6.46 -3.65 -0.02 3.23 16 28 C 0.12 1.84 6.04 -2.65 -0.02 1.82 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.07 0.66 5.94 -51.93 -0.31 0.36 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.06 0.65 6.36 -51.93 -0.33 0.32 16 38 H 0.10 0.86 6.70 -51.93 -0.35 0.52 16 39 H 0.10 0.99 5.71 -51.93 -0.30 0.69 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.65 7.55 -51.93 -0.39 0.26 16 42 H 0.08 1.19 7.61 -51.93 -0.40 0.79 16 43 H 0.08 0.93 7.56 -51.93 -0.39 0.54 16 44 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 45 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 46 H 0.10 2.80 5.89 -51.93 -0.31 2.49 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 50 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 51 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 52 H 0.08 1.45 7.40 -51.93 -0.38 1.07 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -33.20 402.01 -11.09 -44.29 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.52 Total: 0.47 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.11 Total: -7.07 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.58 Total: -51.15 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.20 -11.09 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds