Wall clock time and date at job start Wed Apr 1 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47435 * 2 1 4 4 C 1.38263 * 120.00094 * 265.00259 * 3 2 1 5 5 C 1.38210 * 119.99764 * 179.72432 * 4 3 2 6 6 C 1.38258 * 120.00176 * 0.27251 * 5 4 3 7 7 C 1.38220 * 120.00007 * 359.96169 * 6 5 4 8 8 C 1.38217 * 119.99814 * 85.21478 * 3 2 1 9 9 C 1.50697 * 120.00230 * 0.04384 * 8 3 2 10 10 C 1.50698 * 109.47210 * 85.21091 * 9 8 3 11 11 O 1.21274 * 119.99894 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.47576 * 125.67602 * 359.69612 * 12 10 9 14 14 C 1.55428 * 104.91881 * 156.11766 * 13 12 10 15 15 C 1.53501 * 101.30291 * 35.61273 * 14 13 12 16 16 C 1.53478 * 111.80612 * 88.09396 * 15 14 13 17 17 C 1.54622 * 102.74317 * 154.35737 * 16 15 14 18 18 N 1.47160 * 107.34664 * 339.34420 * 17 16 15 19 19 C 1.36931 * 125.60190 * 179.10392 * 18 17 16 20 20 H 1.08002 * 120.00133 * 174.74634 * 19 18 17 21 21 C 1.38812 * 120.00073 * 354.74644 * 19 18 17 22 22 N 1.31616 * 119.99925 * 7.05118 * 21 19 18 23 23 Si 1.86797 * 120.00142 * 187.04838 * 21 19 18 24 24 H 1.48508 * 109.46963 * 94.98621 * 23 21 19 25 25 H 1.48499 * 109.47189 * 214.98515 * 23 21 19 26 26 H 1.48499 * 109.47370 * 334.99041 * 23 21 19 27 27 C 1.47756 * 108.79903 * 359.08860 * 18 17 16 28 28 C 1.47443 * 125.67354 * 179.97438 * 12 10 9 29 29 H 1.09009 * 109.46824 * 300.00251 * 1 2 3 30 30 H 1.09004 * 109.46909 * 59.99256 * 1 2 3 31 31 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46373 * 239.99924 * 2 1 3 33 33 H 1.08997 * 109.47210 * 120.00489 * 2 1 3 34 34 H 1.07997 * 120.00079 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00151 * 180.25808 * 5 4 3 36 36 H 1.08002 * 120.00058 * 179.97438 * 6 5 4 37 37 H 1.07997 * 120.00075 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47214 * 205.21628 * 9 8 3 39 39 H 1.09007 * 109.46675 * 325.21365 * 9 8 3 40 40 H 1.09002 * 110.32752 * 275.09282 * 13 12 10 41 41 H 1.08997 * 110.33588 * 37.31616 * 13 12 10 42 42 H 1.09003 * 111.22481 * 277.55816 * 14 13 12 43 43 H 1.09000 * 110.97470 * 153.56330 * 14 13 12 44 44 H 1.09002 * 110.75734 * 272.67492 * 16 15 14 45 45 H 1.09000 * 110.75371 * 35.85993 * 16 15 14 46 46 H 1.08997 * 109.87627 * 98.78640 * 17 16 15 47 47 H 1.09001 * 109.86914 * 219.91044 * 17 16 15 48 48 H 0.96998 * 120.00243 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.39587 * 263.54043 * 27 18 17 50 50 H 1.09003 * 110.39999 * 141.13169 * 27 18 17 51 51 H 1.09006 * 109.99786 * 301.51444 * 28 12 10 52 52 H 1.09003 * 109.99350 * 62.80097 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1928 5 6 2.8166 3.3427 -1.1933 6 6 2.9486 4.0292 -0.0005 7 6 2.6245 3.4108 1.1924 8 6 2.1686 2.1056 1.1928 9 6 1.8157 1.4312 2.4935 10 6 2.9991 0.6383 2.9855 11 8 4.0279 0.6229 2.3435 12 7 2.9141 -0.0536 4.1390 13 6 1.7312 -0.1173 5.0192 14 6 1.8926 -1.4451 5.8108 15 6 3.4149 -1.4996 5.9999 16 6 3.8581 -0.7638 7.2719 17 6 5.1896 -1.4658 7.6256 18 7 5.1875 -2.7749 6.9534 19 6 6.1987 -3.6970 7.0009 20 1 6.0677 -4.6661 6.5426 21 6 7.3921 -3.3862 7.6381 22 7 7.5036 -2.2629 8.3150 23 14 8.8398 -4.5621 7.5351 24 1 9.7353 -4.1486 6.4249 25 1 9.5925 -4.5339 8.8149 26 1 8.3426 -5.9385 7.2833 27 6 3.9148 -2.9311 6.2191 28 6 3.9893 -0.8680 4.7344 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.2584 1.5014 -2.1245 35 1 3.0695 3.8261 -2.1253 36 1 3.3049 5.0488 -0.0008 37 1 2.7281 3.9469 2.1242 38 1 1.5508 2.1858 3.2339 39 1 0.9694 0.7620 2.3378 40 1 1.7200 0.7335 5.7006 41 1 0.8177 -0.1397 4.4251 42 1 1.5399 -2.2968 5.2290 43 1 1.3806 -1.3913 6.7715 44 1 4.0213 0.2946 7.0689 45 1 3.1257 -0.8944 8.0686 46 1 6.0292 -0.8683 7.2704 47 1 5.2606 -1.6035 8.7045 48 1 8.3376 -2.0455 8.7599 49 1 3.1989 -3.4962 6.8158 50 1 4.0863 -3.4242 5.2622 51 1 4.2976 -1.6462 4.0362 52 1 4.8403 -0.2352 4.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041401170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:11 Heat of formation + Delta-G solvation = 9.687430 kcal Electronic energy + Delta-G solvation = -30372.888107 eV Core-core repulsion = 26530.343368 eV Total energy + Delta-G solvation = -3842.544739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.53921 -39.62493 -38.12826 -35.63833 -34.47245 -32.90032 -32.47186 -30.59238 -29.68613 -29.09236 -28.64713 -27.63395 -25.41849 -24.12520 -23.81820 -22.51894 -22.11280 -20.76797 -20.23800 -19.13462 -18.80523 -17.05199 -16.78303 -16.47241 -16.34458 -15.59544 -15.30947 -14.97479 -14.71772 -14.37663 -13.98384 -13.90182 -13.78562 -13.69792 -13.26188 -13.19094 -13.13219 -12.78749 -12.59894 -12.23212 -12.15660 -12.03369 -11.93795 -11.87393 -11.59281 -11.46939 -11.35734 -11.21334 -10.96164 -10.87002 -10.82896 -10.76905 -10.22324 -10.03373 -9.98258 -9.80085 -9.70098 -9.61708 -8.88974 -8.68262 -8.56263 -8.47468 -6.81409 -5.70676 -3.02754 1.22576 1.30911 2.73890 3.07477 3.42407 3.47826 3.49326 3.68494 4.46532 4.50814 4.58580 4.59024 4.66049 4.75504 4.79252 4.93867 4.98876 5.02746 5.07505 5.16732 5.22892 5.29148 5.34355 5.40357 5.41222 5.48386 5.49109 5.52267 5.70455 5.73326 5.81976 5.86671 5.87081 5.95220 5.96691 6.01793 6.06331 6.17549 6.25204 6.32547 6.35677 6.37603 6.40341 6.50693 6.54479 6.57665 6.72693 6.80641 6.90887 7.56127 7.63785 7.65245 7.83912 8.26857 8.29125 9.23317 9.83726 10.49739 11.41466 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002505 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.636510 B =11173.145388 C =11642.962660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.061 4.061 9 C -0.101 4.101 10 C 0.526 3.474 11 O -0.530 6.530 12 N -0.620 5.620 13 C 0.100 3.900 14 C -0.118 4.118 15 C -0.083 4.083 16 C -0.131 4.131 17 C 0.177 3.823 18 N -0.605 5.605 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.151 3.849 28 C 0.134 3.866 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.024 0.976 50 H 0.040 0.960 51 H 0.069 0.931 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.749 10.487 -13.759 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.062 4.062 9 C -0.141 4.141 10 C 0.314 3.686 11 O -0.406 6.406 12 N -0.355 5.355 13 C -0.023 4.023 14 C -0.156 4.156 15 C -0.084 4.084 16 C -0.169 4.169 17 C 0.053 3.947 18 N -0.332 5.332 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.024 3.976 28 C 0.012 3.988 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.058 0.942 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.955 10.496 -14.079 25.115 hybrid contribution 0.927 -0.502 0.120 1.061 sum -17.027 9.995 -13.959 24.180 Atomic orbital electron populations 1.21768 0.94693 1.01819 1.02062 1.20573 0.95921 0.92901 1.03278 1.19666 0.98353 0.95692 0.92627 1.20968 1.00215 0.95184 0.97311 1.21092 0.99837 0.94809 0.97998 1.21058 1.00728 0.99972 0.92543 1.20977 0.98618 0.94460 0.98192 1.19130 0.99957 0.93982 0.93104 1.20722 0.97610 0.99939 0.95816 1.20083 0.89440 0.79466 0.79631 1.90748 1.31405 1.62806 1.55681 1.48790 1.15707 1.49037 1.21938 1.22454 0.88119 0.98842 0.92890 1.22628 0.96184 0.96318 1.00485 1.21577 0.93659 0.98442 0.94750 1.22751 1.00276 0.98696 0.95167 1.21229 0.91262 0.85576 0.96665 1.44580 1.14895 1.17088 1.56633 1.19041 0.91385 0.94315 1.30945 0.90462 1.24806 0.97890 0.97566 1.00029 1.69970 1.25545 1.24266 1.36926 0.86142 0.82906 0.79937 0.77061 1.21601 1.21809 1.20652 1.21301 0.89067 0.91720 0.95465 1.21701 0.89524 0.94081 0.93447 0.92574 0.92501 0.92240 0.90946 0.90966 0.86252 0.86284 0.86205 0.86246 0.88288 0.87981 0.91260 0.91039 0.90585 0.89704 0.92208 0.92046 0.93485 0.94098 0.93784 0.95858 0.94170 0.91253 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.72 37.16 0.36 -0.75 16 2 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 3 C -0.06 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.26 9.68 -39.58 -0.38 -1.64 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.10 -1.18 9.68 -39.58 -0.38 -1.56 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.10 -1.07 4.17 -29.04 -0.12 -1.19 16 10 C 0.53 7.78 7.07 -10.98 -0.08 7.70 16 11 O -0.53 -10.26 16.36 5.56 0.09 -10.17 16 12 N -0.62 -8.78 3.34 -170.75 -0.57 -9.35 16 13 C 0.10 1.04 6.67 -2.16 -0.01 1.03 16 14 C -0.12 -1.38 6.07 -25.18 -0.15 -1.53 16 15 C -0.08 -1.35 0.61 -154.07 -0.09 -1.44 16 16 C -0.13 -2.30 5.79 -25.63 -0.15 -2.45 16 17 C 0.18 4.23 5.37 -2.83 -0.02 4.22 16 18 N -0.61 -15.24 3.41 -170.56 -0.58 -15.82 16 19 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 20 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 22 N -0.92 -27.19 10.35 55.49 0.57 -26.61 16 23 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 3.00 6.26 -3.25 -0.02 2.98 16 28 C 0.13 2.33 6.07 -3.71 -0.02 2.31 16 29 H 0.06 0.40 6.83 -51.92 -0.35 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.07 0.84 6.42 -51.93 -0.33 0.50 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.10 0.88 5.35 -51.93 -0.28 0.60 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 42 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.08 0.88 7.76 -51.93 -0.40 0.47 16 44 H 0.06 1.00 7.94 -51.93 -0.41 0.58 16 45 H 0.06 0.98 7.80 -51.93 -0.40 0.58 16 46 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 47 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 50 H 0.04 0.80 7.66 -51.93 -0.40 0.40 16 51 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 52 H 0.07 1.44 7.79 -51.93 -0.40 1.03 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -33.70 404.80 -11.40 -45.10 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.72 Total: -0.70 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.26 Total: -5.92 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.58 Total: -51.78 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.70 -11.40 -45.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041401170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.786 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds