Wall clock time and date at job start Wed Apr 1 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47382 * 2 1 4 4 C 1.38263 * 119.99533 * 269.72845 * 3 2 1 5 5 C 1.38220 * 119.99580 * 179.74425 * 4 3 2 6 6 C 1.38253 * 119.99680 * 0.52963 * 5 4 3 7 7 C 1.38211 * 120.00492 * 359.74432 * 6 5 4 8 8 C 1.50703 * 120.00269 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46898 * 269.97588 * 8 7 6 10 10 O 1.21275 * 119.99956 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99583 * 180.02562 * 9 8 7 12 12 C 1.47572 * 125.67543 * 359.69039 * 11 9 8 13 13 C 1.55433 * 104.91618 * 156.12120 * 12 11 9 14 14 C 1.53503 * 101.30407 * 35.61703 * 13 12 11 15 15 C 1.53470 * 111.80351 * 88.09436 * 14 13 12 16 16 C 1.54626 * 102.74280 * 154.35917 * 15 14 13 17 17 N 1.47156 * 107.34421 * 339.34442 * 16 15 14 18 18 C 1.36931 * 125.60231 * 179.10527 * 17 16 15 19 19 H 1.08001 * 120.00183 * 174.74455 * 18 17 16 20 20 C 1.38811 * 120.00179 * 354.74463 * 18 17 16 21 21 N 1.31619 * 119.99929 * 7.04978 * 20 18 17 22 22 Si 1.86798 * 120.00144 * 187.05212 * 20 18 17 23 23 H 1.48502 * 109.47226 * 94.98609 * 22 20 18 24 24 H 1.48505 * 109.47208 * 214.98242 * 22 20 18 25 25 H 1.48496 * 109.47083 * 334.98176 * 22 20 18 26 26 C 1.47762 * 108.79862 * 359.08779 * 17 16 15 27 27 C 1.47448 * 125.67386 * 180.02562 * 11 9 8 28 28 C 1.38205 * 120.00133 * 89.99854 * 3 2 1 29 29 H 1.09007 * 109.46944 * 300.00750 * 1 2 3 30 30 H 1.09002 * 109.47118 * 60.00048 * 1 2 3 31 31 H 1.08998 * 109.47542 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46707 * 239.99718 * 2 1 3 33 33 H 1.09002 * 109.47118 * 119.99952 * 2 1 3 34 34 H 1.07992 * 120.00138 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.99745 * 180.29407 * 5 4 3 36 36 H 1.08002 * 119.99847 * 179.77292 * 6 5 4 37 37 H 1.09001 * 109.46687 * 29.97677 * 8 7 6 38 38 H 1.09002 * 109.47045 * 149.97822 * 8 7 6 39 39 H 1.08997 * 110.33153 * 275.09552 * 12 11 9 40 40 H 1.08995 * 110.33126 * 37.32491 * 12 11 9 41 41 H 1.09007 * 111.22500 * 277.56049 * 13 12 11 42 42 H 1.08994 * 110.97728 * 153.56890 * 13 12 11 43 43 H 1.09004 * 110.75908 * 272.67094 * 15 14 13 44 44 H 1.08994 * 110.76130 * 35.86015 * 15 14 13 45 45 H 1.08996 * 109.87556 * 98.78137 * 16 15 14 46 46 H 1.09000 * 109.86873 * 219.90876 * 16 15 14 47 47 H 0.96996 * 120.00532 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.39290 * 263.53862 * 26 17 16 49 49 H 1.08996 * 110.39330 * 141.13885 * 26 17 16 50 50 H 1.09007 * 109.99295 * 301.51240 * 27 11 9 51 51 H 1.09000 * 109.99642 * 62.80045 * 27 11 9 52 52 H 1.07996 * 120.00087 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1974 5 6 2.7239 3.3755 -1.1975 6 6 2.9544 4.0272 -0.0002 7 6 2.7241 3.3757 1.1968 8 6 2.9748 4.0863 2.5019 9 6 4.3979 3.8495 2.9375 10 8 5.1360 3.1710 2.2551 11 7 4.8504 4.3918 4.0854 12 6 4.0663 5.2393 5.0045 13 6 4.7666 5.0880 6.3838 14 6 6.2392 4.9819 5.9636 15 6 6.9011 6.3621 5.8526 16 6 8.3950 6.0443 6.0938 17 7 8.4611 4.7509 6.7924 18 6 9.6088 4.1079 7.1725 19 1 9.5518 3.2012 7.7565 20 6 10.8456 4.6214 6.8070 21 7 10.9225 5.7954 6.2169 22 14 12.4009 3.6461 7.1526 23 1 12.7686 2.8579 5.9490 24 1 13.5058 4.5794 7.4895 25 1 12.1648 2.7260 8.2939 26 6 7.0856 4.2601 7.0170 27 6 6.2131 4.2427 4.6283 28 6 2.2627 2.0723 1.1969 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0927 1.5598 -2.1326 35 1 2.9036 3.8846 -2.1328 36 1 3.3140 5.0455 -0.0002 37 1 2.8079 5.1555 2.3713 38 1 2.2937 3.7023 3.2614 39 1 4.0919 6.2784 4.6763 40 1 3.0373 4.8847 5.0618 41 1 4.4395 4.1826 6.8953 42 1 4.5994 5.9678 7.0050 43 1 6.7514 6.7835 4.8585 44 1 6.5183 7.0369 6.6182 45 1 8.9183 5.9772 5.1400 46 1 8.8443 6.8222 6.7111 47 1 11.7866 6.1541 5.9612 48 1 6.7480 4.5215 8.0199 49 1 7.0382 3.1814 6.8684 50 1 6.4397 3.1876 4.7820 51 1 6.9375 4.6833 3.9433 52 1 2.0831 1.5631 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041418925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:22 Heat of formation + Delta-G solvation = 7.068651 kcal Electronic energy + Delta-G solvation = -29694.034473 eV Core-core repulsion = 25851.376175 eV Total energy + Delta-G solvation = -3842.658298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.41927 -39.57613 -38.21789 -35.64993 -34.61160 -32.84087 -32.39934 -30.59563 -29.71470 -29.09283 -28.64753 -27.63011 -25.39500 -24.15310 -23.93494 -22.52070 -22.16938 -20.73518 -20.23769 -19.07482 -18.78754 -17.04264 -16.75425 -16.55666 -16.17203 -15.62252 -15.32319 -14.98990 -14.70556 -14.35960 -14.18323 -13.94710 -13.83173 -13.66909 -13.31425 -13.14089 -13.13034 -12.75665 -12.62913 -12.30102 -12.12647 -12.03606 -11.93290 -11.85056 -11.59177 -11.49456 -11.34827 -11.21225 -11.03320 -10.93970 -10.86175 -10.76886 -10.22230 -10.03346 -9.98295 -9.80078 -9.70224 -9.61675 -8.88305 -8.70932 -8.56261 -8.47391 -6.81379 -5.70640 -3.02729 1.21992 1.30418 2.74271 3.07161 3.42438 3.47832 3.49339 3.67837 4.45464 4.49964 4.52402 4.58915 4.66290 4.68872 4.87771 4.94444 4.98043 5.03600 5.07665 5.11394 5.23880 5.27823 5.31898 5.38657 5.40189 5.46427 5.48426 5.52210 5.64137 5.64978 5.82099 5.86207 5.86955 5.94924 5.95520 5.99166 6.01977 6.17629 6.25312 6.32497 6.35073 6.36882 6.45187 6.50190 6.50837 6.57595 6.72871 6.80754 6.90324 7.56169 7.63830 7.65464 7.83953 8.26913 8.29056 9.23363 9.83729 10.49770 11.41518 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002230 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.592510 B =12553.059395 C =13134.965182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.060 4.060 8 C -0.098 4.098 9 C 0.525 3.475 10 O -0.531 6.531 11 N -0.620 5.620 12 C 0.100 3.900 13 C -0.118 4.118 14 C -0.083 4.083 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.605 5.605 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.151 3.849 27 C 0.134 3.866 28 C -0.102 4.102 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.072 0.928 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.397 -2.879 -9.681 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.313 3.687 10 O -0.408 6.408 11 N -0.355 5.355 12 C -0.023 4.023 13 C -0.156 4.156 14 C -0.084 4.084 15 C -0.169 4.169 16 C 0.053 3.947 17 N -0.332 5.332 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.024 3.976 27 C 0.012 3.988 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.058 0.942 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.775 -3.252 -10.140 26.051 hybrid contribution 1.008 -0.298 0.214 1.072 sum -22.768 -3.550 -9.926 25.090 Atomic orbital electron populations 1.21743 0.94786 1.01606 1.02134 1.20540 0.96057 0.92760 1.02943 1.19817 0.99259 0.96095 0.93093 1.20982 1.00486 0.94982 0.97358 1.21062 0.99592 0.94962 0.97833 1.20959 0.99650 1.00095 0.92003 1.19273 0.98746 0.94401 0.93652 1.20660 0.94715 1.02338 0.96017 1.20112 0.89257 0.79629 0.79694 1.90748 1.58270 1.38754 1.52995 1.48790 1.13984 1.50693 1.22007 1.22453 0.95154 0.94856 0.89822 1.22631 0.94752 1.02835 0.95420 1.21575 0.94228 0.97558 0.95077 1.22752 0.99432 0.94257 1.00458 1.21230 0.88574 0.87689 0.97251 1.44583 0.99683 1.20675 1.68265 1.19041 0.82998 1.05650 1.27964 0.90453 1.24813 0.97575 0.97171 1.00792 1.69970 1.23386 1.16936 1.46436 0.86136 0.83116 0.79037 0.77724 1.21603 1.21812 1.20647 1.21300 0.85846 0.96187 0.94222 1.21703 0.82249 1.00773 0.94039 1.20818 0.99706 0.93882 0.97590 0.92568 0.92630 0.92473 0.91076 0.91002 0.86371 0.86133 0.86308 0.88128 0.88197 0.91253 0.90992 0.90592 0.89702 0.92201 0.92040 0.93480 0.94090 0.93779 0.95852 0.94166 0.91256 0.90987 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.11 -1.24 9.70 -39.59 -0.38 -1.62 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.01 4.84 -29.03 -0.14 -1.15 16 9 C 0.53 7.81 7.85 -10.99 -0.09 7.72 16 10 O -0.53 -10.37 16.36 5.56 0.09 -10.28 16 11 N -0.62 -8.83 3.34 -170.75 -0.57 -9.40 16 12 C 0.10 1.04 6.67 -2.16 -0.01 1.03 16 13 C -0.12 -1.39 6.07 -25.18 -0.15 -1.54 16 14 C -0.08 -1.35 0.61 -154.08 -0.09 -1.45 16 15 C -0.13 -2.31 5.79 -25.63 -0.15 -2.46 16 16 C 0.18 4.24 5.37 -2.83 -0.02 4.23 16 17 N -0.61 -15.28 3.41 -170.57 -0.58 -15.86 16 18 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 19 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -27.25 10.35 55.49 0.57 -26.67 16 22 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.15 3.01 6.26 -3.25 -0.02 2.99 16 27 C 0.13 2.34 6.07 -3.70 -0.02 2.32 16 28 C -0.10 -1.15 9.36 -39.58 -0.37 -1.52 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.10 0.82 8.09 -51.93 -0.42 0.41 16 38 H 0.10 0.80 7.80 -51.93 -0.41 0.40 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 41 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.08 0.88 7.76 -51.93 -0.40 0.48 16 43 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 44 H 0.06 0.99 7.80 -51.93 -0.40 0.58 16 45 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 46 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 49 H 0.04 0.81 7.66 -51.93 -0.40 0.41 16 50 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 51 H 0.07 1.44 7.78 -51.93 -0.40 1.04 16 52 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 411.95 15.07 6.21 6.21 Total: -1.00 -33.89 411.95 -11.59 -45.48 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -9.01 Total: -1.33 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.28 Total: -5.55 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.58 Total: -51.93 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.89 -11.59 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041418925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.549 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds