Wall clock time and date at job start Wed Apr 1 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47044 * 2 1 4 4 C 1.38261 * 119.99973 * 269.97948 * 3 2 1 5 5 C 1.38217 * 120.00353 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99398 * 359.85657 * 5 4 3 7 7 C 1.38217 * 120.00226 * 0.39861 * 6 5 4 8 8 C 1.50692 * 120.00116 * 179.80802 * 7 6 5 9 9 C 1.50702 * 109.47425 * 269.72681 * 8 7 6 10 10 O 1.21287 * 119.99819 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00280 * 179.97438 * 9 8 7 12 12 C 1.48455 * 127.65352 * 359.88752 * 11 9 8 13 13 C 1.54719 * 104.56803 * 218.76024 * 12 11 9 14 14 C 1.53037 * 104.58195 * 336.47960 * 13 12 11 15 15 C 1.53887 * 111.36649 * 238.91513 * 14 13 12 16 16 C 1.55136 * 101.45885 * 273.26823 * 15 14 13 17 17 N 1.47541 * 104.97790 * 324.27155 * 16 15 14 18 18 C 1.36940 * 125.67136 * 203.87493 * 17 16 15 19 19 H 1.07998 * 119.99739 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00000 * 0.03481 * 18 17 16 21 21 N 1.31622 * 119.99808 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47018 * 90.00128 * 22 20 18 24 24 H 1.48502 * 109.46765 * 209.99872 * 22 20 18 25 25 H 1.48490 * 109.47104 * 329.99906 * 22 20 18 26 26 C 1.47344 * 108.65530 * 23.90276 * 17 16 15 27 27 C 1.48445 * 127.73393 * 179.97438 * 11 9 8 28 28 C 1.38210 * 120.00125 * 90.00259 * 3 2 1 29 29 H 1.08993 * 109.47315 * 60.00005 * 1 2 3 30 30 H 1.08996 * 109.46765 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46589 * 299.99900 * 1 2 3 32 32 H 1.08997 * 109.47184 * 240.00507 * 2 1 3 33 33 H 1.08996 * 109.47802 * 119.99885 * 2 1 3 34 34 H 1.08006 * 119.99968 * 0.02562 * 4 3 2 35 35 H 1.07987 * 120.00087 * 180.02562 * 5 4 3 36 36 H 1.08004 * 119.99809 * 180.20770 * 6 5 4 37 37 H 1.09003 * 109.47489 * 149.72825 * 8 7 6 38 38 H 1.09001 * 109.47247 * 29.72644 * 8 7 6 39 39 H 1.09005 * 110.37080 * 100.04125 * 12 11 9 40 40 H 1.08994 * 110.52094 * 337.56527 * 12 11 9 41 41 H 1.09002 * 110.43641 * 217.66765 * 13 12 11 42 42 H 1.08998 * 110.43143 * 95.28735 * 13 12 11 43 43 H 1.08998 * 111.02555 * 31.31484 * 15 14 13 44 44 H 1.09000 * 111.02619 * 155.22404 * 15 14 13 45 45 H 1.08991 * 110.34381 * 205.39295 * 16 15 14 46 46 H 1.09003 * 110.42775 * 83.18132 * 16 15 14 47 47 H 0.96998 * 119.99293 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.97167 * 238.67353 * 26 17 16 49 49 H 1.09007 * 109.99948 * 117.43244 * 26 17 16 50 50 H 1.09000 * 110.46391 * 22.86199 * 27 11 9 51 51 H 1.09000 * 110.46387 * 260.27104 * 27 11 9 52 52 H 1.07995 * 119.99830 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2632 2.0725 -1.1974 5 6 2.7234 3.3758 -1.1975 6 6 2.9500 4.0288 -0.0001 7 6 2.7243 3.3757 1.1969 8 6 2.9755 4.0860 2.5020 9 6 4.3985 3.8484 2.9375 10 8 5.1363 3.1695 2.2550 11 7 4.8517 4.3913 4.0849 12 6 4.1039 5.2457 5.0413 13 6 5.1306 6.3094 5.4977 14 6 6.4939 5.6575 5.2563 15 6 7.3074 5.5603 6.5590 16 6 8.0093 6.9434 6.5880 17 7 8.3058 7.2503 5.1756 18 6 9.2877 8.0951 4.7311 19 1 9.4245 8.2538 3.6716 20 6 10.1071 8.7472 5.6422 21 7 9.9407 8.5532 6.9334 22 14 11.4460 9.9001 5.0358 23 1 10.8994 11.2759 4.9198 24 1 12.5763 9.8961 5.9990 25 1 11.9267 9.4447 3.7067 26 6 7.3694 6.4972 4.3231 27 6 6.2091 4.2700 4.6733 28 6 2.2627 2.0724 1.1969 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0831 1.5633 -2.1327 35 1 2.9032 3.8848 -2.1327 36 1 3.3064 5.0484 -0.0001 37 1 2.2943 3.7024 3.2615 38 1 2.8092 5.1553 2.3715 39 1 3.7648 4.6553 5.8925 40 1 3.2575 5.7222 4.5469 41 1 4.9990 6.5359 6.5558 42 1 5.0308 7.2155 4.9002 43 1 6.6520 5.4360 7.4210 44 1 8.0372 4.7524 6.5049 45 1 8.9321 6.8881 7.1654 46 1 7.3449 7.6985 7.0082 47 1 10.5136 9.0086 7.5699 48 1 7.9231 5.8464 3.6463 49 1 6.7488 7.1871 3.7510 50 1 6.9384 4.0238 3.9015 51 1 6.2172 3.5165 5.4608 52 1 2.0824 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041418927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:33 Heat of formation + Delta-G solvation = 10.929043 kcal Electronic energy + Delta-G solvation = -29614.794472 eV Core-core repulsion = 25772.303573 eV Total energy + Delta-G solvation = -3842.490899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.45 seconds Orbital eigenvalues (eV) -40.38548 -39.56332 -38.21424 -35.65758 -34.63440 -32.84885 -32.41298 -30.42016 -29.72697 -29.23697 -28.66884 -27.55872 -25.46595 -24.17322 -23.83374 -22.59850 -22.17156 -20.75676 -20.26278 -19.16404 -18.61672 -17.05719 -16.79680 -16.62844 -16.11503 -15.57229 -15.49734 -14.94905 -14.74366 -14.39510 -14.05910 -13.92957 -13.82688 -13.76723 -13.37815 -13.18243 -13.06102 -12.93319 -12.61056 -12.25286 -12.17925 -11.97211 -11.91095 -11.82471 -11.50930 -11.46861 -11.30879 -11.10212 -11.03641 -10.95776 -10.87502 -10.79290 -10.19403 -10.04993 -9.96652 -9.84877 -9.73753 -9.48006 -8.90052 -8.72589 -8.68183 -8.57345 -6.81641 -5.64643 -3.05489 1.20283 1.28828 2.69206 2.99008 3.40561 3.45815 3.47773 3.65613 4.43036 4.48137 4.50270 4.56542 4.67689 4.75811 4.87308 4.94894 4.99959 5.03388 5.06442 5.10619 5.23030 5.27097 5.30276 5.36696 5.41733 5.44651 5.48596 5.54281 5.61330 5.63268 5.78578 5.83953 5.84290 5.92412 5.95356 5.97576 6.00481 6.08864 6.21199 6.34106 6.38531 6.39956 6.43835 6.48396 6.57215 6.63201 6.78917 6.88077 6.88801 7.50920 7.62903 7.63942 7.86009 8.22817 8.36728 9.23372 9.83859 10.49206 11.39419 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002097 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.570824 B =13347.916062 C =14101.690174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.098 4.098 9 C 0.534 3.466 10 O -0.535 6.535 11 N -0.624 5.624 12 C 0.100 3.900 13 C -0.116 4.116 14 C -0.083 4.083 15 C -0.132 4.132 16 C 0.155 3.845 17 N -0.604 5.604 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.152 3.848 27 C 0.122 3.878 28 C -0.102 4.102 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.012 0.988 47 H 0.251 0.749 48 H 0.024 0.976 49 H 0.021 0.979 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 -13.362 -8.242 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.322 3.678 10 O -0.411 6.411 11 N -0.359 5.359 12 C -0.023 4.023 13 C -0.154 4.154 14 C -0.085 4.085 15 C -0.171 4.171 16 C 0.030 3.970 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.026 3.974 27 C 0.000 4.000 28 C -0.121 4.121 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.101 0.899 51 H 0.088 0.912 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.752 -13.644 -8.641 26.296 hybrid contribution 0.708 0.823 -0.219 1.107 sum -20.045 -12.821 -8.860 25.391 Atomic orbital electron populations 1.21744 0.94783 1.01597 1.02170 1.20536 0.96066 0.92766 1.02877 1.19812 0.99341 0.96077 0.93095 1.20984 1.00464 0.95010 0.97356 1.21073 0.99483 0.94952 0.97875 1.20991 0.99541 1.00124 0.91994 1.19263 0.98797 0.94364 0.93633 1.20650 0.94588 1.02498 0.96052 1.20070 0.89219 0.79279 0.79225 1.90736 1.58301 1.39106 1.52962 1.49213 1.14229 1.50790 1.21630 1.22589 0.95386 0.92183 0.92151 1.22462 0.93048 0.97595 1.02287 1.21588 0.95166 0.93917 0.97790 1.22967 0.98333 1.01668 0.94112 1.21949 0.99601 0.88633 0.86829 1.44618 1.35726 1.51329 1.01347 1.19082 1.06574 1.17037 0.92140 0.90601 1.24774 0.99920 1.00679 0.95390 1.69799 1.41162 1.46357 0.99869 0.86077 0.81304 0.80629 0.77546 1.21694 1.21656 1.20721 1.21233 0.90897 0.92839 0.92416 1.22320 0.83586 0.96765 0.97364 1.20803 0.99808 0.93896 0.97546 0.92602 0.92484 0.92566 0.91090 0.91060 0.86371 0.86092 0.86213 0.88184 0.87981 0.91061 0.90576 0.90058 0.90605 0.92020 0.91930 0.87742 0.96998 0.93794 0.95844 0.96156 0.89860 0.91180 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.57 16 2 C -0.09 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 7 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 8 C -0.10 -1.00 4.82 -29.04 -0.14 -1.14 16 9 C 0.53 7.62 7.91 -10.98 -0.09 7.53 16 10 O -0.53 -9.89 16.31 5.55 0.09 -9.80 16 11 N -0.62 -8.45 3.33 -169.34 -0.56 -9.02 16 12 C 0.10 1.06 6.95 -2.06 -0.01 1.04 16 13 C -0.12 -1.57 6.23 -25.81 -0.16 -1.73 16 14 C -0.08 -1.38 0.79 -153.91 -0.12 -1.51 16 15 C -0.13 -2.36 5.83 -25.14 -0.15 -2.51 16 16 C 0.15 3.65 5.82 -2.34 -0.01 3.63 16 17 N -0.60 -15.44 3.41 -170.36 -0.58 -16.02 16 18 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.15 3.22 6.48 -3.56 -0.02 3.20 16 27 C 0.12 1.86 6.19 -2.88 -0.02 1.84 16 28 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.10 0.87 7.88 -51.93 -0.41 0.47 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.63 7.31 -51.93 -0.38 0.25 16 41 H 0.08 1.05 7.49 -51.93 -0.39 0.66 16 42 H 0.08 1.11 7.32 -51.93 -0.38 0.73 16 43 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 44 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 45 H 0.10 2.81 5.89 -51.93 -0.31 2.50 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.02 0.52 7.41 -51.92 -0.38 0.14 16 49 H 0.02 0.44 7.38 -51.92 -0.38 0.06 16 50 H 0.08 1.45 7.17 -51.93 -0.37 1.08 16 51 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 52 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 409.93 15.07 6.18 6.18 Total: -1.00 -33.32 409.93 -11.49 -44.81 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.84 Total: -0.54 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.31 Total: -6.62 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.58 Total: -51.26 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.32 -11.49 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041418927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.739 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds