Wall clock time and date at job start Wed Apr 1 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38252 * 119.99836 * 2 1 4 4 C 1.38220 * 119.99668 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99777 * 359.74794 * 4 3 2 6 6 C 1.50698 * 119.99793 * 180.27409 * 5 4 3 7 7 C 1.38215 * 119.99976 * 0.50559 * 5 4 3 8 8 C 1.50701 * 119.99696 * 179.76762 * 7 5 4 9 9 C 1.50694 * 109.47192 * 84.72688 * 8 7 5 10 10 O 1.21280 * 120.00217 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99790 * 179.97438 * 9 8 7 12 12 C 1.48315 * 127.04696 * 359.95754 * 11 9 8 13 13 C 1.55259 * 103.48829 * 218.43644 * 12 11 9 14 14 C 1.53226 * 102.46864 * 323.86134 * 13 12 11 15 15 C 1.53715 * 111.52842 * 143.29767 * 14 13 12 16 16 C 1.54582 * 102.78531 * 153.99144 * 15 14 13 17 17 N 1.47140 * 107.32652 * 339.10568 * 16 15 14 18 18 C 1.36935 * 125.60838 * 179.08967 * 17 16 15 19 19 H 1.07997 * 120.00500 * 174.74453 * 18 17 16 20 20 C 1.38820 * 119.99692 * 354.74628 * 18 17 16 21 21 N 1.31620 * 120.00260 * 7.05276 * 20 18 17 22 22 Si 1.86804 * 119.99601 * 187.04896 * 20 18 17 23 23 H 1.48498 * 109.46837 * 94.98981 * 22 20 18 24 24 H 1.48505 * 109.46966 * 214.98419 * 22 20 18 25 25 H 1.48493 * 109.47310 * 334.98994 * 22 20 18 26 26 C 1.47706 * 108.78541 * 359.06672 * 17 16 15 27 27 C 1.47894 * 127.00499 * 179.97438 * 11 9 8 28 28 C 1.38209 * 119.99538 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47298 * 270.02017 * 1 2 3 30 30 H 1.09002 * 109.46892 * 30.02128 * 1 2 3 31 31 H 1.09001 * 109.47062 * 150.02148 * 1 2 3 32 32 H 1.07995 * 120.00454 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.99837 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47426 * 270.22910 * 6 5 4 35 35 H 1.09003 * 109.47529 * 30.23324 * 6 5 4 36 36 H 1.08998 * 109.47021 * 150.23243 * 6 5 4 37 37 H 1.08999 * 109.47127 * 324.72685 * 8 7 5 38 38 H 1.08999 * 109.47124 * 204.72772 * 8 7 5 39 39 H 1.09004 * 110.58602 * 99.94585 * 12 11 9 40 40 H 1.09001 * 110.63424 * 336.95325 * 12 11 9 41 41 H 1.09002 * 110.80978 * 205.61784 * 13 12 11 42 42 H 1.09000 * 110.97788 * 82.18272 * 13 12 11 43 43 H 1.09001 * 110.74646 * 272.31389 * 15 14 13 44 44 H 1.08993 * 110.75302 * 35.47874 * 15 14 13 45 45 H 1.09000 * 109.87527 * 98.53654 * 16 15 14 46 46 H 1.08993 * 109.87276 * 219.66866 * 16 15 14 47 47 H 0.96988 * 120.00007 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.38933 * 263.81003 * 26 17 16 49 49 H 1.08994 * 110.39121 * 141.42006 * 26 17 16 50 50 H 1.08999 * 110.04495 * 35.54507 * 27 11 9 51 51 H 1.08999 * 110.04464 * 274.12481 * 27 11 9 52 52 H 1.08001 * 120.00397 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 5.7787 -0.0001 0.0132 7 6 3.5806 -1.1971 0.0010 8 6 4.3341 -2.5022 0.0021 9 6 4.6919 -2.8745 1.4178 10 8 4.3675 -2.1511 2.3356 11 7 5.3725 -4.0114 1.6640 12 6 5.8435 -5.0045 0.6681 13 6 5.6133 -6.3661 1.3776 14 6 5.9387 -6.0372 2.8383 15 6 5.0130 -6.7916 3.8061 16 6 5.8666 -6.8876 5.0913 17 7 7.2730 -6.7087 4.6975 18 6 8.3456 -6.7089 5.5488 19 1 9.3490 -6.6542 5.1533 20 6 8.1430 -6.7793 6.9204 21 7 6.9337 -6.9854 7.3973 22 14 9.5868 -6.5817 8.0890 23 1 9.6751 -5.1671 8.5319 24 1 9.3906 -7.4591 9.2710 25 1 10.8424 -6.9619 7.3933 26 6 7.3377 -6.5293 3.2328 27 6 5.8020 -4.5239 2.9832 28 6 2.1980 -1.1970 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6584 2.1326 0.0004 33 1 4.1204 2.1325 0.0010 34 1 6.1467 0.0017 -1.0129 35 1 6.1397 0.8889 0.5303 36 1 6.1396 -0.8911 0.5270 37 1 5.2450 -2.3962 -0.5871 38 1 3.7093 -3.2827 -0.4320 39 1 6.9019 -4.8582 0.4520 40 1 5.2520 -4.9426 -0.2454 41 1 6.2940 -7.1244 0.9906 42 1 4.5774 -6.6894 1.2750 43 1 4.1010 -6.2236 3.9898 44 1 4.7772 -7.7835 3.4208 45 1 5.5747 -6.1031 5.7895 46 1 5.7326 -7.8658 5.5529 47 1 6.7921 -7.0342 8.3556 48 1 7.5585 -7.4780 2.7434 49 1 8.0895 -5.7837 2.9743 50 1 5.0524 -4.2870 3.7381 51 1 6.7614 -4.0865 3.2595 52 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041628091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:05 Heat of formation + Delta-G solvation = 9.713223 kcal Electronic energy + Delta-G solvation = -30135.116596 eV Core-core repulsion = 26292.572975 eV Total energy + Delta-G solvation = -3842.543620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.47664 -39.62414 -38.16652 -35.63307 -34.32863 -32.79319 -32.37067 -30.54673 -29.43789 -29.27407 -28.63198 -27.56831 -25.46041 -24.90075 -24.18236 -22.37379 -22.27690 -20.58870 -20.21165 -19.00773 -18.71857 -17.10382 -16.60084 -16.35699 -16.01803 -15.67451 -15.22602 -14.82906 -14.65087 -14.29608 -13.98874 -13.91878 -13.65745 -13.47063 -13.33113 -13.23821 -12.96561 -12.84316 -12.74263 -12.37413 -12.20739 -12.09039 -11.98297 -11.91872 -11.61284 -11.40761 -11.35540 -11.24114 -11.08001 -11.04218 -10.84517 -10.78471 -10.17495 -9.99943 -9.97057 -9.83284 -9.68788 -9.61845 -8.85800 -8.57373 -8.50167 -8.47468 -6.81570 -5.70809 -3.03173 1.21664 1.30012 2.74165 3.05417 3.41593 3.46732 3.48698 3.64355 4.46788 4.50335 4.57123 4.62865 4.71873 4.74802 4.86385 4.93200 5.02458 5.05779 5.08011 5.24547 5.30095 5.34711 5.40768 5.41705 5.42935 5.48333 5.50828 5.52374 5.60005 5.61314 5.79299 5.81034 5.84736 5.95061 5.98754 6.06102 6.10141 6.18906 6.23184 6.32834 6.35962 6.38110 6.47168 6.51311 6.54640 6.62688 6.70537 6.83092 6.92714 7.56694 7.65235 7.68279 7.84499 8.26957 8.29280 9.22998 9.83582 10.49841 11.41221 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.002378 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.326650 B =11771.621297 C =12083.575794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.061 4.061 8 C -0.098 4.098 9 C 0.530 3.470 10 O -0.531 6.531 11 N -0.624 5.624 12 C 0.098 3.902 13 C -0.119 4.119 14 C -0.085 4.085 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.605 5.605 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.150 3.850 27 C 0.132 3.868 28 C -0.103 4.103 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.022 0.978 49 H 0.039 0.961 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 10.400 -21.474 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.173 4.173 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.318 3.682 10 O -0.407 6.407 11 N -0.359 5.359 12 C -0.025 4.025 13 C -0.158 4.158 14 C -0.087 4.087 15 C -0.170 4.170 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.024 3.976 27 C 0.010 3.990 28 C -0.121 4.121 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.057 0.943 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.285 10.866 -20.740 25.188 hybrid contribution 0.771 -0.023 0.793 1.106 sum -8.513 10.844 -19.948 24.248 Atomic orbital electron populations 1.20767 0.91304 1.02472 1.02352 1.19821 0.95947 0.93090 1.00529 1.20964 0.94140 0.97362 1.01176 1.20948 0.94153 0.97291 1.01120 1.19677 0.95904 0.92566 0.99133 1.20818 0.91413 1.03220 1.01831 1.19123 0.93329 0.93158 1.00519 1.20659 1.01826 0.96184 0.95150 1.20050 0.77552 0.79716 0.90910 1.90750 1.53437 1.50133 1.46389 1.49109 1.55446 1.21676 1.09628 1.22662 0.99715 0.88177 0.91898 1.22570 1.02257 0.96109 0.94822 1.21619 0.98823 0.93952 0.94279 1.22809 0.97679 0.98700 0.97790 1.21223 0.82162 1.00677 0.90733 1.44578 1.03174 1.85165 1.00262 1.19035 0.85927 1.43872 0.86965 0.90470 1.24818 0.96724 1.02003 0.96739 1.69974 1.19440 1.55218 1.11972 0.86146 0.81484 0.77624 0.80812 1.21617 1.21798 1.20656 1.21455 0.92379 0.96891 0.86876 1.21871 1.00599 0.92406 0.84114 1.20827 0.93218 0.97618 1.00444 0.91211 0.91730 0.91672 0.86302 0.86168 0.91231 0.91414 0.91583 0.88073 0.88275 0.90756 0.90601 0.89807 0.90858 0.92145 0.92137 0.93439 0.94135 0.93753 0.96029 0.94265 0.90510 0.91042 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.07 -0.86 5.88 -104.62 -0.62 -1.47 16 6 C -0.12 -1.18 9.22 36.00 0.33 -0.85 16 7 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 8 C -0.10 -1.04 4.09 -29.04 -0.12 -1.16 16 9 C 0.53 7.84 7.09 -10.99 -0.08 7.76 16 10 O -0.53 -10.27 16.38 5.56 0.09 -10.18 16 11 N -0.62 -8.85 3.32 -169.90 -0.56 -9.41 16 12 C 0.10 1.03 6.96 -1.85 -0.01 1.02 16 13 C -0.12 -1.42 6.20 -25.42 -0.16 -1.57 16 14 C -0.08 -1.40 0.74 -153.97 -0.11 -1.51 16 15 C -0.13 -2.41 5.74 -25.53 -0.15 -2.55 16 16 C 0.18 4.27 5.35 -2.86 -0.02 4.25 16 17 N -0.61 -15.19 3.41 -170.49 -0.58 -15.78 16 18 C -0.23 -6.38 10.27 -15.06 -0.15 -6.53 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -27.23 10.35 55.49 0.57 -26.65 16 22 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.15 2.94 6.12 -3.14 -0.02 2.92 16 27 C 0.13 2.29 6.27 -3.46 -0.02 2.27 16 28 C -0.10 -1.18 9.34 -39.59 -0.37 -1.55 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.07 0.75 6.15 -51.93 -0.32 0.44 16 37 H 0.10 0.86 7.01 -51.93 -0.36 0.50 16 38 H 0.10 0.83 7.81 -51.93 -0.41 0.42 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.57 7.26 -51.93 -0.38 0.20 16 41 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 42 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 43 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 44 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.05 1.29 7.30 -51.93 -0.38 0.91 16 46 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 49 H 0.04 0.76 7.72 -51.93 -0.40 0.36 16 50 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 51 H 0.07 1.36 7.51 -51.93 -0.39 0.97 16 52 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -33.88 406.56 -11.23 -45.11 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.79 Total: -0.64 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.07 Total: -5.84 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.57 Total: -51.84 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.88 -11.23 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041628091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.825 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds