Wall clock time and date at job start Wed Apr 1 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99727 * 2 1 4 4 C 1.38224 * 119.99756 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99867 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00016 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00088 * 359.96023 * 5 4 3 8 8 C 1.50697 * 120.00037 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47607 * 84.99545 * 8 7 5 10 10 O 1.21282 * 119.99954 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00223 * 179.97438 * 9 8 7 12 12 C 1.47615 * 126.91926 * 0.02646 * 11 9 8 13 13 C 1.54357 * 107.04828 * 154.97777 * 12 11 9 14 14 C 1.53092 * 104.62515 * 2.22340 * 13 12 11 15 15 C 1.53646 * 111.77056 * 259.50153 * 14 13 12 16 16 C 1.55187 * 101.41362 * 272.05104 * 15 14 13 17 17 N 1.47559 * 105.01068 * 324.52525 * 16 15 14 18 18 C 1.36939 * 125.67531 * 203.83789 * 17 16 15 19 19 H 1.07996 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99641 * 0.02807 * 18 17 16 21 21 N 1.31613 * 120.00378 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99782 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46992 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47341 * 119.99989 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00394 * 22 20 18 26 26 C 1.47405 * 108.65021 * 23.86399 * 17 16 15 27 27 C 1.48412 * 126.91984 * 179.97438 * 11 9 8 28 28 C 1.38206 * 119.99872 * 180.20229 * 2 1 3 29 29 H 1.08996 * 109.46780 * 90.00434 * 1 2 3 30 30 H 1.08996 * 109.46905 * 210.00629 * 1 2 3 31 31 H 1.08994 * 109.47044 * 330.00534 * 1 2 3 32 32 H 1.08000 * 120.00210 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.00014 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46897 * 269.97925 * 6 5 4 35 35 H 1.09003 * 109.46958 * 29.97582 * 6 5 4 36 36 H 1.09000 * 109.47402 * 149.98059 * 6 5 4 37 37 H 1.08998 * 109.47037 * 324.99642 * 8 7 5 38 38 H 1.09000 * 109.47143 * 205.00041 * 8 7 5 39 39 H 1.08998 * 109.91935 * 35.63080 * 12 11 9 40 40 H 1.08996 * 109.91829 * 274.32506 * 12 11 9 41 41 H 1.09001 * 110.39980 * 121.00791 * 13 12 11 42 42 H 1.09001 * 110.40204 * 243.31444 * 13 12 11 43 43 H 1.08990 * 111.03869 * 30.09173 * 15 14 13 44 44 H 1.09002 * 111.02910 * 154.02625 * 15 14 13 45 45 H 1.09001 * 110.33081 * 205.63981 * 16 15 14 46 46 H 1.09004 * 110.42100 * 83.46039 * 16 15 14 47 47 H 0.96999 * 120.00236 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.98408 * 238.51853 * 26 17 16 49 49 H 1.09002 * 110.01958 * 117.23463 * 26 17 16 50 50 H 1.09002 * 110.67894 * 99.19099 * 27 11 9 51 51 H 1.09006 * 110.68260 * 336.02371 * 27 11 9 52 52 H 1.08004 * 120.00290 * 0.02700 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 3.5807 -1.1969 0.0008 8 6 4.3342 -2.5020 0.0014 9 6 4.6936 -2.8740 1.4168 10 8 4.3693 -2.1508 2.3349 11 7 5.3744 -4.0109 1.6626 12 6 5.8420 -4.9970 0.6686 13 6 7.0506 -5.7283 1.2907 14 6 7.1829 -5.1317 2.6944 15 6 8.2943 -4.0729 2.7611 16 6 9.5336 -4.9487 3.0857 17 7 9.0272 -6.0142 3.9720 18 6 9.7755 -6.7316 4.8667 19 1 9.3087 -7.4944 5.4721 20 6 11.1343 -6.4784 4.9955 21 7 11.7035 -5.5491 4.2574 22 14 12.1551 -7.4566 6.2165 23 1 11.2846 -8.4336 6.9188 24 1 13.2309 -8.1814 5.4938 25 1 12.7609 -6.5319 7.2081 26 6 7.5818 -6.1782 3.7336 27 6 5.8059 -4.5230 2.9871 28 6 2.1981 -1.1969 -0.0042 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6583 2.1326 -0.0004 33 1 4.1205 2.1326 -0.0010 34 1 6.1412 -0.0008 -1.0296 35 1 6.1425 0.8905 0.5111 36 1 6.1425 -0.8896 0.5125 37 1 5.2444 -2.3962 -0.5887 38 1 3.7090 -3.2827 -0.4319 39 1 6.1467 -4.4871 -0.2453 40 1 5.0475 -5.7109 0.4516 41 1 6.8573 -6.7994 1.3497 42 1 7.9516 -5.5370 0.7079 43 1 8.4120 -3.5682 1.8023 44 1 8.1030 -3.3548 3.5586 45 1 10.2914 -4.3570 3.5993 46 1 9.9449 -5.3790 2.1725 47 1 12.6528 -5.3719 4.3477 48 1 7.0305 -6.0131 4.6593 49 1 7.3777 -7.1787 3.3522 50 1 5.1164 -5.2863 3.3479 51 1 5.8902 -3.7081 3.7061 52 1 1.6581 -2.1323 -0.0080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041628102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:11 Heat of formation + Delta-G solvation = 10.148084 kcal Electronic energy + Delta-G solvation = -30109.147974 eV Core-core repulsion = 26266.623210 eV Total energy + Delta-G solvation = -3842.524764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.52841 -39.65183 -38.18735 -35.67093 -34.34798 -32.81294 -32.37135 -30.44605 -29.44324 -29.29074 -28.77372 -27.82769 -25.44469 -24.89878 -23.78978 -22.65005 -22.26629 -20.56837 -20.28382 -19.19120 -18.56735 -17.10187 -16.73145 -16.36624 -15.99794 -15.49425 -15.32970 -14.89834 -14.75397 -14.30219 -14.08804 -13.97943 -13.79651 -13.43450 -13.26113 -13.18924 -12.91542 -12.84012 -12.75514 -12.55919 -12.30361 -12.09484 -12.01262 -11.80936 -11.62491 -11.46189 -11.30073 -11.10250 -11.09111 -11.04674 -10.92671 -10.79174 -10.23620 -10.03653 -9.98361 -9.82703 -9.74734 -9.48466 -8.87890 -8.65504 -8.56770 -8.48939 -6.83566 -5.65621 -3.06942 1.20056 1.28198 2.68288 2.99597 3.39419 3.45022 3.47436 3.62232 4.45094 4.48418 4.54824 4.61042 4.73101 4.73680 4.85876 4.96541 5.00605 5.04289 5.08831 5.24462 5.26213 5.31584 5.36560 5.41186 5.41195 5.48549 5.50861 5.54256 5.58710 5.59673 5.79797 5.82402 5.90153 5.93938 5.96859 5.99036 6.08992 6.11029 6.21469 6.31262 6.35302 6.38237 6.45177 6.53835 6.55256 6.65534 6.75664 6.85644 6.90981 7.51024 7.61410 7.62957 7.85835 8.22394 8.35641 9.21697 9.82437 10.47679 11.38429 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.002180 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.675536 B =12841.526331 C =13238.436564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.061 4.061 8 C -0.099 4.099 9 C 0.532 3.468 10 O -0.533 6.533 11 N -0.620 5.620 12 C 0.101 3.899 13 C -0.115 4.115 14 C -0.082 4.082 15 C -0.127 4.127 16 C 0.155 3.845 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.151 3.849 27 C 0.122 3.878 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.012 0.988 47 H 0.251 0.749 48 H 0.026 0.974 49 H 0.025 0.975 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.750 8.988 -14.163 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.174 4.174 7 C -0.061 4.061 8 C -0.139 4.139 9 C 0.321 3.679 10 O -0.409 6.409 11 N -0.355 5.355 12 C -0.022 4.022 13 C -0.153 4.153 14 C -0.083 4.083 15 C -0.166 4.166 16 C 0.030 3.970 17 N -0.330 5.330 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.025 3.975 27 C 0.000 4.000 28 C -0.122 4.122 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.087 0.913 51 H 0.102 0.898 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.770 9.436 -13.608 25.030 hybrid contribution 0.600 -0.650 0.541 1.037 sum -18.170 8.786 -13.067 24.044 Atomic orbital electron populations 1.20758 0.91336 1.02716 1.02034 1.19812 0.95912 0.93098 1.00663 1.20968 0.94147 0.97353 1.01163 1.20961 0.94137 0.97341 1.01023 1.19701 0.95979 0.92546 0.98934 1.20832 0.91267 1.03333 1.01970 1.19117 0.93294 0.93160 1.00553 1.20663 1.01900 0.96214 0.95118 1.20046 0.77520 0.79407 0.90944 1.90735 1.53635 1.50163 1.46410 1.48942 1.55467 1.21605 1.09443 1.22257 0.96845 0.91055 0.92080 1.22364 0.97252 0.99775 0.95905 1.21554 0.94235 0.97349 0.95208 1.22844 0.96884 0.96778 1.00067 1.21964 0.92917 0.89031 0.93074 1.44617 1.02230 1.41640 1.44497 1.19123 0.90064 1.12990 1.12714 0.90436 1.24791 0.96642 0.99402 0.99948 1.69815 1.10510 1.34343 1.42412 0.86007 0.80179 0.79001 0.80366 1.20533 1.21804 1.21767 1.21057 0.87411 0.94522 0.94504 1.22314 0.94386 0.98288 0.85035 1.20813 0.93201 0.97567 1.00605 0.91391 0.91655 0.91672 0.86308 0.86122 0.91144 0.91352 0.91490 0.87935 0.88290 0.91077 0.91598 0.90349 0.90161 0.92547 0.92156 0.87844 0.97049 0.93818 0.95613 0.95684 0.91292 0.89794 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.97 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.07 -0.83 5.88 -104.63 -0.62 -1.45 16 6 C -0.12 -1.23 9.22 36.01 0.33 -0.90 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.03 4.23 -29.04 -0.12 -1.16 16 9 C 0.53 7.50 7.11 -10.99 -0.08 7.42 16 10 O -0.53 -9.69 16.26 5.56 0.09 -9.60 16 11 N -0.62 -8.29 3.31 -170.16 -0.56 -8.86 16 12 C 0.10 1.08 6.77 -2.72 -0.02 1.06 16 13 C -0.11 -1.54 6.04 -25.97 -0.16 -1.69 16 14 C -0.08 -1.35 0.68 -154.04 -0.10 -1.46 16 15 C -0.13 -2.40 5.94 -25.24 -0.15 -2.55 16 16 C 0.15 3.69 5.84 -2.30 -0.01 3.68 16 17 N -0.60 -15.19 3.41 -170.42 -0.58 -15.77 16 18 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -26.78 10.10 55.49 0.56 -26.22 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 C 0.15 3.04 6.51 -3.66 -0.02 3.01 16 27 C 0.12 1.85 5.91 -2.79 -0.02 1.83 16 28 C -0.10 -1.14 9.34 -39.58 -0.37 -1.51 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.07 0.79 6.16 -51.93 -0.32 0.47 16 37 H 0.10 0.91 6.76 -51.93 -0.35 0.56 16 38 H 0.10 0.80 8.05 -51.93 -0.42 0.39 16 39 H 0.07 0.62 7.55 -51.93 -0.39 0.23 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 42 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 43 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 44 H 0.06 1.19 7.84 -51.93 -0.41 0.79 16 45 H 0.10 2.83 5.89 -51.93 -0.31 2.52 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 49 H 0.03 0.49 7.43 -51.93 -0.39 0.11 16 50 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 51 H 0.08 1.43 7.54 -51.93 -0.39 1.04 16 52 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -33.00 406.35 -11.23 -44.23 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.77 Total: -0.08 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.07 Total: -6.84 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.58 Total: -50.84 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.00 -11.23 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041628102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.376 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds