Wall clock time and date at job start Wed Apr 1 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99590 * 2 1 4 4 C 1.38240 * 119.99582 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99797 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00352 * 359.95318 * 4 3 2 7 7 C 1.38238 * 119.99573 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99693 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47315 * 90.00230 * 8 7 6 10 10 O 1.21281 * 120.00078 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99972 * 180.02562 * 9 8 7 12 12 C 1.47618 * 126.91887 * 0.02562 * 11 9 8 13 13 C 1.54343 * 107.05172 * 204.98444 * 12 11 9 14 14 C 1.53093 * 104.72930 * 357.71199 * 13 12 11 15 15 C 1.53640 * 111.77973 * 218.76906 * 14 13 12 16 16 C 1.55195 * 101.41408 * 272.09087 * 15 14 13 17 17 N 1.47566 * 105.00085 * 324.51011 * 16 15 14 18 18 C 1.36938 * 125.66949 * 203.83397 * 17 16 15 19 19 H 1.07998 * 119.99909 * 180.02562 * 18 17 16 20 20 C 1.38818 * 120.00222 * 0.03273 * 18 17 16 21 21 N 1.31621 * 119.99506 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46937 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46826 * 119.99755 * 22 20 18 25 25 H 1.48497 * 109.46975 * 239.99862 * 22 20 18 26 26 C 1.47405 * 108.65549 * 23.86300 * 17 16 15 27 27 C 1.48409 * 126.91988 * 179.97438 * 11 9 8 28 28 C 1.38233 * 120.00248 * 180.22757 * 2 1 3 29 29 H 1.09004 * 109.47002 * 90.00283 * 1 2 3 30 30 H 1.09004 * 109.47326 * 210.00487 * 1 2 3 31 31 H 1.09001 * 109.47134 * 330.00257 * 1 2 3 32 32 H 1.07999 * 120.00330 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47134 * 269.97821 * 5 4 3 34 34 H 1.09004 * 109.47193 * 29.97596 * 5 4 3 35 35 H 1.08996 * 109.47176 * 149.97427 * 5 4 3 36 36 H 1.07994 * 120.00527 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.46962 * 329.99676 * 8 7 6 38 38 H 1.09005 * 109.46971 * 209.99896 * 8 7 6 39 39 H 1.09002 * 109.91435 * 85.62905 * 12 11 9 40 40 H 1.08997 * 110.08264 * 324.43342 * 12 11 9 41 41 H 1.09002 * 110.40541 * 116.55967 * 13 12 11 42 42 H 1.08998 * 110.40672 * 238.86652 * 13 12 11 43 43 H 1.09001 * 111.03286 * 30.11429 * 15 14 13 44 44 H 1.08997 * 111.03929 * 154.05271 * 15 14 13 45 45 H 1.08999 * 110.32886 * 205.63343 * 16 15 14 46 46 H 1.08996 * 110.42474 * 83.43608 * 16 15 14 47 47 H 0.97000 * 119.99151 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.98284 * 238.53908 * 26 17 16 49 49 H 1.08995 * 110.02197 * 117.24788 * 26 17 16 50 50 H 1.09000 * 110.68222 * 260.85401 * 27 11 9 51 51 H 1.08997 * 110.67922 * 24.02597 * 27 11 9 52 52 H 1.08005 * 120.00008 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3339 2.5024 -0.0011 6 6 4.2717 0.0001 -0.0001 7 6 3.5805 -1.1970 0.0004 8 6 4.3341 -2.5021 0.0002 9 6 4.5858 -2.9370 1.4210 10 8 4.1925 -2.2542 2.3429 11 7 5.2489 -4.0843 1.6671 12 6 5.7933 -5.0255 0.6687 13 6 5.8732 -6.4093 1.3477 14 6 5.4010 -6.1662 2.7835 15 6 6.2161 -6.9831 3.7977 16 6 5.4212 -8.3157 3.8285 17 7 4.0078 -7.9210 3.6736 18 6 2.9251 -8.6511 4.0859 19 1 1.9262 -8.2733 3.9251 20 6 3.1115 -9.8767 4.7104 21 7 4.3289 -10.3373 4.9059 22 14 1.6345 -10.8723 5.2734 23 1 0.3870 -10.1399 4.9382 24 1 1.6344 -12.1891 4.5869 25 1 1.7080 -11.0797 6.7420 26 6 3.9552 -6.6105 3.0008 27 6 5.5798 -4.6551 2.9965 28 6 2.1982 -1.1971 -0.0048 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6581 2.1325 0.0004 33 1 4.5155 2.8166 -1.0290 34 1 3.7448 3.2622 0.5124 35 1 5.2863 2.3723 0.5128 36 1 5.3517 0.0001 -0.0001 37 1 5.2863 -2.3718 -0.5140 38 1 3.7448 -3.2619 -0.5133 39 1 6.7885 -4.7051 0.3603 40 1 5.1341 -5.0745 -0.1979 41 1 5.2141 -7.1176 0.8456 42 1 6.8993 -6.7767 1.3421 43 1 7.2343 -7.1432 3.4431 44 1 6.2153 -6.5043 4.7769 45 1 5.5704 -8.8237 4.7812 46 1 5.7270 -8.9601 3.0043 47 1 4.4590 -11.1939 5.3420 48 1 3.4344 -5.8891 3.6305 49 1 3.4459 -6.7036 2.0417 50 1 6.6100 -4.4252 3.2686 51 1 4.8890 -4.2884 3.7556 52 1 1.6582 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041632653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:24 Heat of formation + Delta-G solvation = 8.196444 kcal Electronic energy + Delta-G solvation = -29813.730630 eV Core-core repulsion = 25971.121237 eV Total energy + Delta-G solvation = -3842.609393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.41513 -39.61425 -38.21003 -35.64972 -33.66052 -33.64290 -32.66976 -30.50601 -29.34599 -28.95506 -27.98603 -27.13447 -26.83311 -25.50574 -23.79494 -22.60952 -21.19682 -20.87804 -20.29920 -19.15478 -18.58574 -17.06896 -16.75463 -16.44411 -16.15844 -15.54613 -15.32055 -14.75826 -14.43150 -14.23833 -14.17045 -14.12442 -13.80895 -13.40798 -13.15970 -13.13164 -13.05942 -12.85829 -12.72424 -12.65152 -12.38415 -12.10947 -11.84234 -11.77186 -11.59281 -11.50398 -11.30669 -11.16570 -11.13544 -11.10805 -10.86011 -10.80386 -10.19637 -10.04034 -9.94212 -9.84554 -9.73813 -9.49090 -8.70176 -8.66580 -8.63438 -8.54153 -6.82149 -5.65076 -3.05872 1.22719 1.28541 2.71159 3.01634 3.39997 3.45865 3.48196 3.63949 4.46397 4.48206 4.57648 4.58975 4.64014 4.74069 4.98529 4.99530 5.01603 5.11421 5.13040 5.18408 5.28423 5.34782 5.35521 5.38968 5.43129 5.44310 5.45636 5.49340 5.57461 5.64847 5.70144 5.78723 5.84769 5.95988 5.98189 6.00428 6.06528 6.09515 6.23108 6.37237 6.38633 6.42305 6.43035 6.52622 6.56014 6.64073 6.78731 6.87715 6.92459 7.50953 7.63464 7.64013 7.85838 8.24667 8.36297 9.23005 9.83456 10.48797 11.39144 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.002370 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.930157 B =11809.184259 C =13050.973579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.098 4.098 9 C 0.532 3.468 10 O -0.534 6.534 11 N -0.621 5.621 12 C 0.101 3.899 13 C -0.115 4.115 14 C -0.082 4.082 15 C -0.131 4.131 16 C 0.155 3.845 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.155 3.845 27 C 0.121 3.879 28 C -0.109 4.109 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.013 0.987 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.020 0.980 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 20.454 -14.069 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.085 4.085 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.056 4.056 8 C -0.138 4.138 9 C 0.321 3.679 10 O -0.410 6.410 11 N -0.355 5.355 12 C -0.022 4.022 13 C -0.153 4.153 14 C -0.083 4.083 15 C -0.170 4.170 16 C 0.030 3.970 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.029 3.971 27 C -0.001 4.001 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.031 0.969 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.038 0.962 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.720 20.725 -13.498 24.882 hybrid contribution -0.672 -0.729 0.193 1.010 sum 2.049 19.996 -13.305 24.105 Atomic orbital electron populations 1.20787 0.91208 1.02916 1.02153 1.19842 0.96000 0.93002 0.99384 1.20857 0.93480 0.97396 1.02365 1.19817 0.93817 0.95117 0.99716 1.20769 0.99948 0.94114 1.02075 1.20789 0.99366 0.91438 1.01300 1.19242 0.93521 0.93495 0.99326 1.20655 1.02041 0.96112 0.94982 1.20069 0.77248 0.79517 0.91085 1.90733 1.50743 1.53190 1.46380 1.48957 1.55941 1.21655 1.08985 1.22235 0.98382 0.89609 0.91956 1.22367 1.02413 0.95279 0.95285 1.21620 0.98216 0.93296 0.95218 1.22873 0.97683 0.99141 0.97338 1.21958 0.81810 0.90479 1.02753 1.44653 1.02750 1.17577 1.68093 1.19126 0.85897 0.98950 1.30795 0.90561 1.24776 0.96817 0.97728 1.01451 1.69812 1.18440 1.20331 1.48596 0.86007 0.81513 0.79917 0.78151 1.20562 1.21792 1.21737 1.21073 0.91935 0.88789 0.95327 1.22407 1.00499 0.92039 0.85140 1.20857 0.93368 0.97701 1.00802 0.91265 0.91391 0.91626 0.86356 0.91329 0.91643 0.91585 0.86447 0.88169 0.87983 0.91650 0.91020 0.90069 0.90433 0.91974 0.91862 0.87753 0.96948 0.93834 0.95862 0.96196 0.91192 0.89776 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.08 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.29 9.36 -39.58 -0.37 -1.66 16 4 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 5 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 6 C -0.11 -1.26 9.36 -39.58 -0.37 -1.63 16 7 C -0.06 -0.66 4.37 -104.62 -0.46 -1.12 16 8 C -0.10 -1.05 4.91 -29.03 -0.14 -1.19 16 9 C 0.53 7.77 7.88 -10.99 -0.09 7.68 16 10 O -0.53 -10.01 16.26 5.56 0.09 -9.92 16 11 N -0.62 -8.57 3.31 -170.01 -0.56 -9.13 16 12 C 0.10 1.11 6.77 -2.73 -0.02 1.09 16 13 C -0.12 -1.56 6.04 -25.98 -0.16 -1.71 16 14 C -0.08 -1.37 0.68 -153.89 -0.11 -1.47 16 15 C -0.13 -2.37 6.05 -25.24 -0.15 -2.52 16 16 C 0.15 3.66 5.84 -2.30 -0.01 3.65 16 17 N -0.60 -15.46 3.41 -170.41 -0.58 -16.04 16 18 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -26.82 10.10 55.49 0.56 -26.26 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.15 3.27 6.46 -3.65 -0.02 3.25 16 27 C 0.12 1.86 6.04 -2.65 -0.02 1.84 16 28 C -0.11 -1.31 9.36 -39.58 -0.37 -1.69 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.10 0.93 7.86 -51.93 -0.41 0.52 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 41 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 42 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 43 H 0.06 0.96 7.63 -51.93 -0.40 0.56 16 44 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 45 H 0.10 2.81 5.89 -51.93 -0.31 2.51 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 49 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 50 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 51 H 0.08 1.47 7.40 -51.93 -0.38 1.09 16 52 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 410.75 15.07 6.19 6.19 Total: -1.00 -33.49 410.75 -11.28 -44.77 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.91 Total: -0.43 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.04 Total: -6.40 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.58 Total: -51.43 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.49 -11.28 -44.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041632653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.962 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds