Wall clock time and date at job start Wed Apr 1 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47171 * 2 1 4 4 C 1.38229 * 120.00526 * 89.99830 * 3 2 1 5 5 C 1.38231 * 120.00542 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99746 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99903 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47442 * 89.99640 * 7 6 5 9 9 O 1.21281 * 119.99776 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99983 * 179.97438 * 8 7 6 11 11 C 1.48314 * 127.04599 * 359.96417 * 10 8 7 12 12 C 1.55264 * 103.48690 * 218.43283 * 11 10 8 13 13 C 1.53232 * 102.46346 * 323.86069 * 12 11 10 14 14 C 1.53719 * 111.52298 * 143.29684 * 13 12 11 15 15 C 1.54582 * 102.78265 * 153.99109 * 14 13 12 16 16 N 1.47135 * 107.32893 * 339.10084 * 15 14 13 17 17 C 1.36937 * 125.60876 * 179.08838 * 16 15 14 18 18 H 1.08004 * 119.99643 * 179.97438 * 17 16 15 19 19 C 1.38806 * 120.00003 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00114 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47060 * 59.99469 * 21 19 17 23 23 H 1.48491 * 109.47214 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46540 * 299.99855 * 21 19 17 25 25 C 1.47706 * 108.78201 * 359.07166 * 16 15 14 26 26 C 1.47887 * 127.00357 * 179.97438 * 10 8 7 27 27 C 1.38229 * 120.00012 * 0.27244 * 6 5 4 28 28 C 1.38235 * 119.99826 * 359.51603 * 27 6 5 29 29 H 1.09004 * 109.47404 * 300.00284 * 1 2 3 30 30 H 1.08999 * 109.47014 * 60.00066 * 1 2 3 31 31 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47342 * 239.99908 * 2 1 3 33 33 H 1.09006 * 109.47356 * 119.99125 * 2 1 3 34 34 H 1.08008 * 119.99841 * 359.97308 * 4 3 2 35 35 H 1.08001 * 120.00455 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47051 * 329.99542 * 7 6 5 37 37 H 1.08999 * 109.47063 * 209.99975 * 7 6 5 38 38 H 1.09002 * 110.58570 * 99.94359 * 11 10 8 39 39 H 1.08999 * 110.63761 * 336.94381 * 11 10 8 40 40 H 1.08996 * 110.81224 * 205.62094 * 12 11 10 41 41 H 1.09001 * 110.97602 * 82.17486 * 12 11 10 42 42 H 1.09006 * 110.75352 * 272.31139 * 14 13 12 43 43 H 1.09004 * 110.75350 * 35.47980 * 14 13 12 44 44 H 1.08991 * 109.87465 * 98.54151 * 15 14 13 45 45 H 1.09006 * 109.87216 * 219.67132 * 15 14 13 46 46 H 0.96997 * 120.00071 * 180.02562 * 20 19 17 47 47 H 1.09002 * 110.39627 * 263.79961 * 25 16 15 48 48 H 1.09000 * 110.39200 * 141.41056 * 25 16 15 49 49 H 1.09002 * 110.04929 * 35.54797 * 26 10 8 50 50 H 1.09005 * 110.04486 * 274.12861 * 26 10 8 51 51 H 1.08000 * 120.00359 * 179.73287 * 27 6 5 52 52 H 1.08006 * 119.99739 * 180.27675 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1970 5 6 2.7240 3.3756 1.1970 6 6 2.9554 4.0269 -0.0002 7 6 3.4588 5.4473 -0.0002 8 6 4.9659 5.4462 0.0006 9 8 5.5715 4.3954 0.0006 10 7 5.6406 6.6129 0.0001 11 6 5.0632 7.9790 -0.0018 12 6 6.0125 8.7721 -0.9401 13 6 7.3802 8.1587 -0.6219 14 6 8.2565 8.0509 -1.8803 15 6 9.6900 8.0847 -1.3028 16 7 9.6097 8.6946 0.0338 17 6 10.6641 8.8907 0.8853 18 1 10.5013 9.3493 1.8495 19 6 11.9418 8.4999 0.5094 20 7 12.1399 7.9405 -0.6655 21 14 13.3799 8.7666 1.6713 22 1 13.1370 8.0291 2.9371 23 1 14.6267 8.2662 1.0388 24 1 13.5190 10.2163 1.9619 25 6 8.2049 9.0610 0.3058 26 6 7.1085 6.7921 0.0013 27 6 2.7202 3.3769 -1.1972 28 6 2.2630 2.0723 -1.1972 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0822 1.5636 2.1324 35 1 2.9036 3.8850 2.1323 36 1 3.0954 5.9616 0.8895 37 1 3.0963 5.9612 -0.8904 38 1 5.0752 8.4016 1.0029 39 1 4.0495 7.9671 -0.4023 40 1 5.9987 9.8345 -0.6969 41 1 5.7505 8.6124 -1.9860 42 1 8.0717 7.1108 -2.4002 43 1 8.0845 8.8980 -2.5444 44 1 10.0819 7.0708 -1.2245 45 1 10.3343 8.6845 -1.9456 46 1 13.0328 7.6670 -0.9280 47 1 8.0328 10.1104 0.0663 48 1 7.9557 8.8627 1.3482 49 1 7.5810 6.0099 -0.5929 50 1 7.4874 6.7651 1.0230 51 1 2.8968 3.8871 -2.1326 52 1 2.0835 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041713807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:47 Heat of formation + Delta-G solvation = 9.034022 kcal Electronic energy + Delta-G solvation = -29526.849638 eV Core-core repulsion = 25684.276565 eV Total energy + Delta-G solvation = -3842.573073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -40.36586 -39.55548 -38.21585 -35.64460 -34.79002 -32.72206 -31.52382 -31.03538 -30.44927 -29.25490 -28.32289 -27.30844 -25.43074 -24.32014 -23.20320 -22.86723 -22.36678 -20.82392 -20.21117 -19.17207 -18.76171 -17.09285 -16.64830 -16.34182 -16.16389 -15.64870 -15.36611 -14.98177 -14.66861 -14.30660 -14.04153 -13.97968 -13.83000 -13.62079 -13.49285 -13.33822 -13.11581 -12.87565 -12.48212 -12.26376 -12.16910 -12.01938 -11.90187 -11.84689 -11.45832 -11.38261 -11.34596 -11.24202 -11.02833 -10.98484 -10.85046 -10.75631 -10.19395 -10.00358 -9.97527 -9.81931 -9.68541 -9.59698 -8.99765 -8.62847 -8.58947 -8.50232 -6.81288 -5.68630 -3.02380 1.18700 1.32891 2.74451 3.05362 3.42238 3.46434 3.47842 3.67219 4.45509 4.50613 4.57691 4.58786 4.66301 4.72400 4.81190 4.88288 4.94683 5.06165 5.07308 5.13866 5.25521 5.26088 5.34258 5.38230 5.42312 5.46791 5.50595 5.54519 5.60030 5.68034 5.81239 5.83601 5.85218 5.94502 5.95820 5.96738 6.06308 6.18510 6.23328 6.29614 6.36430 6.38337 6.47962 6.49147 6.51562 6.62951 6.71072 6.83400 6.89925 7.57457 7.64955 7.68487 7.85096 8.27876 8.29096 9.24033 9.84333 10.50194 11.42847 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.002074 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.427097 B =13498.801550 C =14132.240047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.097 4.097 8 C 0.529 3.471 9 O -0.533 6.533 10 N -0.623 5.623 11 C 0.099 3.901 12 C -0.119 4.119 13 C -0.085 4.085 14 C -0.132 4.132 15 C 0.178 3.822 16 N -0.605 5.605 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.151 3.849 26 C 0.131 3.869 27 C -0.102 4.102 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.253 0.747 47 H 0.022 0.978 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.816 -7.067 -0.819 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.137 4.137 8 C 0.317 3.683 9 O -0.409 6.409 10 N -0.358 5.358 11 C -0.024 4.024 12 C -0.158 4.158 13 C -0.087 4.087 14 C -0.170 4.170 15 C 0.053 3.947 16 N -0.332 5.332 17 C -0.357 4.357 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.024 3.976 26 C 0.010 3.990 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.283 -7.786 -0.816 26.468 hybrid contribution 0.980 0.292 0.573 1.172 sum -24.303 -7.494 -0.243 25.434 Atomic orbital electron populations 1.21743 0.94808 1.01576 1.02166 1.20539 0.96059 0.92821 1.02856 1.19864 0.99319 0.96086 0.93264 1.20940 1.00364 0.94740 0.97464 1.20952 0.98728 0.94924 0.97358 1.19271 0.99102 0.94781 0.93627 1.20645 0.92605 0.95478 1.04956 1.20092 0.89175 0.82353 0.76667 1.90746 1.70193 1.30388 1.49591 1.49104 1.08340 1.05391 1.72996 1.22660 0.97410 0.82067 1.00287 1.22572 0.94094 0.99719 0.99374 1.21624 0.94414 0.94804 0.97865 1.22819 0.98301 1.00515 0.95370 1.21214 0.89498 0.98361 0.85627 1.44566 1.01521 1.71181 1.15883 1.18987 0.85613 1.34239 0.96893 0.90551 1.24800 0.97450 1.00970 0.97211 1.69954 1.20906 1.46246 1.19765 0.86207 0.81989 0.77714 0.79891 1.21193 1.21631 1.21211 1.21447 0.85662 0.94710 0.95754 1.21874 0.78682 0.96903 1.01574 1.20949 0.98756 0.94912 0.97344 1.20943 1.00380 0.94717 0.97459 0.92596 0.92587 0.92503 0.91082 0.91091 0.86257 0.86277 0.88186 0.88177 0.90771 0.90576 0.89806 0.90850 0.92143 0.92131 0.93590 0.93944 0.93714 0.95996 0.94341 0.90486 0.91064 0.86274 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.09 -0.65 6.06 -27.89 -0.17 -0.82 16 3 C -0.09 -0.86 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 5 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 6 C -0.07 -0.78 4.37 -104.63 -0.46 -1.24 16 7 C -0.10 -0.99 4.78 -29.03 -0.14 -1.13 16 8 C 0.53 7.83 7.89 -10.99 -0.09 7.74 16 9 O -0.53 -10.35 16.38 5.56 0.09 -10.26 16 10 N -0.62 -8.88 3.32 -169.90 -0.56 -9.44 16 11 C 0.10 1.03 6.96 -1.84 -0.01 1.02 16 12 C -0.12 -1.42 6.20 -25.41 -0.16 -1.58 16 13 C -0.09 -1.41 0.74 -153.97 -0.11 -1.52 16 14 C -0.13 -2.42 5.74 -25.53 -0.15 -2.56 16 15 C 0.18 4.30 5.34 -2.86 -0.02 4.29 16 16 N -0.60 -15.22 3.41 -170.49 -0.58 -15.80 16 17 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 18 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.15 2.96 6.12 -3.14 -0.02 2.94 16 26 C 0.13 2.29 6.27 -3.47 -0.02 2.27 16 27 C -0.10 -1.13 9.70 -39.59 -0.38 -1.52 16 28 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.10 0.80 7.85 -51.93 -0.41 0.39 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.57 7.26 -51.93 -0.38 0.19 16 40 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 41 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 42 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 43 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 44 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 45 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 48 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 49 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 50 H 0.07 1.37 7.51 -51.93 -0.39 0.98 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 52 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 411.22 15.07 6.20 6.20 Total: -1.00 -33.82 411.22 -11.55 -45.37 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.95 Total: -0.99 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.30 Total: -5.63 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.57 Total: -51.99 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.82 -11.55 -45.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041713807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.405 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds