Wall clock time and date at job start Wed Apr 1 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47251 * 2 1 4 4 C 1.38231 * 120.00165 * 89.99944 * 3 2 1 5 5 C 1.38234 * 119.99906 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00199 * 0.02609 * 5 4 3 7 7 C 1.50701 * 120.00134 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47166 * 89.99709 * 7 6 5 9 9 O 1.21282 * 120.00044 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00111 * 179.97438 * 8 7 6 11 11 C 1.47618 * 126.91748 * 359.97438 * 10 8 7 12 12 C 1.54343 * 107.05172 * 205.02143 * 11 10 8 13 13 C 1.53093 * 104.72930 * 357.71199 * 12 11 10 14 14 C 1.53640 * 111.77973 * 218.76906 * 13 12 11 15 15 C 1.55195 * 101.41408 * 272.09087 * 14 13 12 16 16 N 1.47566 * 105.00085 * 324.51011 * 15 14 13 17 17 C 1.36938 * 125.66949 * 203.83397 * 16 15 14 18 18 H 1.07998 * 119.99909 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00222 * 0.03273 * 17 16 15 20 20 N 1.31621 * 119.99506 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46740 * 59.99848 * 21 19 17 23 23 H 1.48493 * 109.46823 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46923 * 299.99815 * 21 19 17 25 25 C 1.47405 * 108.65549 * 23.86300 * 16 15 14 26 26 C 1.48409 * 126.92127 * 180.02562 * 10 8 7 27 27 C 1.38239 * 120.00161 * 0.25001 * 6 5 4 28 28 C 1.38232 * 119.99588 * 359.47189 * 27 6 5 29 29 H 1.09001 * 109.47547 * 60.00085 * 1 2 3 30 30 H 1.09004 * 109.47590 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47102 * 299.99608 * 1 2 3 32 32 H 1.09001 * 109.47369 * 239.99967 * 2 1 3 33 33 H 1.09001 * 109.47547 * 119.99915 * 2 1 3 34 34 H 1.07998 * 120.00102 * 359.97438 * 4 3 2 35 35 H 1.08008 * 119.99984 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.47028 * 329.99666 * 7 6 5 37 37 H 1.09001 * 109.47099 * 209.99793 * 7 6 5 38 38 H 1.09002 * 109.91435 * 85.66604 * 11 10 8 39 39 H 1.09001 * 109.91854 * 324.37430 * 11 10 8 40 40 H 1.09002 * 110.40541 * 116.55967 * 12 11 10 41 41 H 1.08998 * 110.40672 * 238.86652 * 12 11 10 42 42 H 1.09001 * 111.03286 * 30.11429 * 14 13 12 43 43 H 1.08997 * 111.03929 * 154.05271 * 14 13 12 44 44 H 1.08999 * 110.32886 * 205.63343 * 15 14 13 45 45 H 1.08996 * 110.42474 * 83.43608 * 15 14 13 46 46 H 0.97000 * 119.99151 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.98284 * 238.53908 * 25 16 15 48 48 H 1.08995 * 110.02197 * 117.24788 * 25 16 15 49 49 H 1.09000 * 110.68222 * 260.81702 * 26 10 8 50 50 H 1.08997 * 110.67922 * 23.98898 * 26 10 8 51 51 H 1.07997 * 120.00310 * 179.72785 * 27 6 5 52 52 H 1.08001 * 120.00059 * 180.29483 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3755 1.1970 6 6 2.9544 4.0272 -0.0001 7 6 3.4568 5.4480 -0.0001 8 6 4.9637 5.4479 -0.0001 9 8 5.5702 4.3976 -0.0005 10 7 5.6377 6.6152 -0.0006 11 6 5.0590 7.9732 -0.0018 12 6 6.1119 8.9133 -0.6262 13 6 7.3166 8.0130 -0.9123 14 6 8.6447 8.7265 -0.6162 15 6 8.9257 9.4275 -1.9720 16 7 8.4300 8.4890 -2.9972 17 6 8.8487 8.4352 -4.2998 18 1 8.4215 7.7084 -4.9748 19 6 9.8225 9.3148 -4.7528 20 7 10.3429 10.2007 -3.9302 21 14 10.3943 9.2409 -6.5296 22 1 9.2405 9.4876 -7.4314 23 1 11.4319 10.2781 -6.7591 24 1 10.9643 7.8989 -6.8108 25 6 7.4086 7.6195 -2.3860 26 6 7.1110 6.7940 -0.0012 27 6 2.7186 3.3774 -1.1973 28 6 2.2628 2.0724 -1.1972 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5635 2.1324 35 1 2.9044 3.8846 2.1324 36 1 3.0934 5.9619 0.8899 37 1 3.0935 5.9618 -0.8902 38 1 4.8418 8.2851 1.0198 39 1 4.1473 7.9878 -0.5992 40 1 5.7331 9.3469 -1.5517 41 1 6.3840 9.6999 0.0776 42 1 8.5264 9.4567 0.1845 43 1 9.4294 8.0091 -0.3765 44 1 9.9955 9.5947 -2.0972 45 1 8.3858 10.3725 -2.0308 46 1 11.0231 10.8156 -4.2468 47 1 7.7071 6.5749 -2.4747 48 1 6.4462 7.7744 -2.8737 49 1 7.4739 7.0022 1.0053 50 1 7.6052 5.9153 -0.4157 51 1 2.8944 3.8880 -2.1325 52 1 2.0830 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041713808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:58 Heat of formation + Delta-G solvation = 9.571470 kcal Electronic energy + Delta-G solvation = -29572.231106 eV Core-core repulsion = 25729.681339 eV Total energy + Delta-G solvation = -3842.549767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 8.05 seconds Orbital eigenvalues (eV) -40.39795 -39.55833 -38.21625 -35.66152 -34.79030 -32.74808 -31.53079 -31.03073 -30.35097 -29.29375 -28.51277 -27.30208 -25.52695 -24.04127 -23.06354 -22.86199 -22.60837 -20.81713 -20.30962 -19.22916 -18.65389 -17.06947 -16.78152 -16.36195 -16.10349 -15.53808 -15.39680 -14.94159 -14.75462 -14.31401 -14.18351 -14.00848 -13.89136 -13.76898 -13.45376 -13.21174 -13.03949 -12.82457 -12.65471 -12.25888 -12.20376 -11.99421 -11.87783 -11.76357 -11.49852 -11.42668 -11.29306 -11.16251 -11.02478 -10.98087 -10.86258 -10.77422 -10.22447 -10.04592 -9.96219 -9.84469 -9.73322 -9.48905 -8.99408 -8.65748 -8.62591 -8.54181 -6.81883 -5.64383 -3.05276 1.18925 1.33274 2.70885 3.01888 3.41402 3.45526 3.46809 3.67101 4.46060 4.48617 4.56539 4.59148 4.66626 4.73934 4.81865 4.88839 5.02616 5.03012 5.07525 5.15553 5.26160 5.26858 5.30292 5.38987 5.42526 5.47364 5.49428 5.56437 5.60208 5.68640 5.78795 5.83779 5.85200 5.95040 5.95814 5.97450 5.98647 6.09187 6.23124 6.29578 6.37644 6.39215 6.48558 6.49624 6.56136 6.64160 6.78845 6.87867 6.90260 7.51081 7.63216 7.63676 7.86150 8.24440 8.36787 9.23411 9.83898 10.49344 11.39630 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002171 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.935661 B =12896.061768 C =14033.746719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.098 4.098 8 C 0.532 3.468 9 O -0.535 6.535 10 N -0.621 5.621 11 C 0.101 3.899 12 C -0.116 4.116 13 C -0.082 4.082 14 C -0.131 4.131 15 C 0.155 3.845 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.075 0.925 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C 0.121 3.879 27 C -0.101 4.101 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.012 0.988 46 H 0.252 0.748 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.121 0.879 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.156 -11.006 12.891 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.138 4.138 8 C 0.321 3.679 9 O -0.411 6.411 10 N -0.355 5.355 11 C -0.022 4.022 12 C -0.154 4.154 13 C -0.083 4.083 14 C -0.170 4.170 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.029 3.971 26 C -0.001 4.001 27 C -0.119 4.119 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.030 0.970 46 H 0.063 0.937 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.139 0.861 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.745 -11.558 12.740 25.441 hybrid contribution 0.284 0.199 -0.958 1.019 sum -18.461 -11.359 11.782 24.671 Atomic orbital electron populations 1.21745 0.94803 1.01577 1.02189 1.20537 0.96069 0.92821 1.02827 1.19866 0.99325 0.96092 0.93263 1.20923 1.00504 0.94752 0.97417 1.20926 0.98939 0.94910 0.97267 1.19270 0.99138 0.94741 0.93620 1.20652 0.92539 0.95503 1.05080 1.20091 0.89243 0.82279 0.76337 1.90732 1.70180 1.30406 1.49790 1.48966 1.08139 1.05411 1.73032 1.22244 0.97482 0.81918 1.00526 1.22369 0.94364 0.97021 1.01607 1.21605 0.95961 0.94278 0.96493 1.22874 0.94578 0.99085 1.00503 1.21956 1.02552 0.89910 0.82550 1.44631 1.43053 1.37571 1.07770 1.19029 1.16553 1.14364 0.84973 0.90678 1.24775 0.99448 0.98211 0.98293 1.69790 1.31362 1.22762 1.33265 0.86155 0.78127 0.77140 0.84109 1.21275 1.21578 1.21176 1.21076 0.92589 0.94213 0.89263 1.22395 0.79805 0.98655 0.99257 1.20991 0.98503 0.94899 0.97469 1.20960 1.00266 0.94715 0.97495 0.92549 0.92506 0.92610 0.91070 0.91131 0.86306 0.86362 0.88200 0.88010 0.91622 0.91024 0.90066 0.90435 0.91980 0.91864 0.87761 0.96965 0.93737 0.95867 0.96212 0.91197 0.89771 0.86141 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.15 0.37 -0.57 16 2 C -0.09 -0.65 6.06 -27.89 -0.17 -0.82 16 3 C -0.09 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 5 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 6 C -0.07 -0.78 4.37 -104.62 -0.46 -1.24 16 7 C -0.10 -1.03 4.91 -29.04 -0.14 -1.17 16 8 C 0.53 7.70 7.88 -10.98 -0.09 7.61 16 9 O -0.53 -9.95 16.26 5.56 0.09 -9.86 16 10 N -0.62 -8.53 3.31 -170.05 -0.56 -9.10 16 11 C 0.10 1.11 6.77 -2.73 -0.02 1.09 16 12 C -0.12 -1.56 6.04 -25.98 -0.16 -1.71 16 13 C -0.08 -1.36 0.68 -153.93 -0.11 -1.47 16 14 C -0.13 -2.37 6.05 -25.24 -0.15 -2.52 16 15 C 0.16 3.67 5.84 -2.30 -0.01 3.65 16 16 N -0.60 -15.44 3.41 -170.41 -0.58 -16.02 16 17 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.78 10.10 55.49 0.56 -26.22 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 C 0.15 3.27 6.46 -3.65 -0.02 3.24 16 26 C 0.12 1.85 6.04 -2.69 -0.02 1.83 16 27 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 28 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.10 0.91 7.85 -51.93 -0.41 0.50 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 40 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 41 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 42 H 0.06 0.96 7.63 -51.93 -0.40 0.56 16 43 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 44 H 0.10 2.81 5.89 -51.93 -0.31 2.50 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.52 7.56 -51.93 -0.39 0.13 16 48 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 49 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 50 H 0.08 1.47 7.39 -51.93 -0.38 1.09 16 51 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 52 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 410.79 15.07 6.19 6.19 Total: -1.00 -33.20 410.79 -11.53 -44.73 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.91 Total: -0.41 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.30 Total: -6.54 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.58 Total: -51.33 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.20 -11.53 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041713808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.306 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.05 seconds