Wall clock time and date at job start Wed Apr 1 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47474 * 120.00212 * 2 1 3 5 5 O 1.21279 * 120.00414 * 240.42383 * 4 2 1 6 6 N 1.34781 * 119.99870 * 60.42023 * 4 2 1 7 7 C 1.48252 * 127.00455 * 356.10558 * 6 4 2 8 8 C 1.55265 * 103.44910 * 141.57125 * 7 6 4 9 9 C 1.53233 * 102.45968 * 36.19162 * 8 7 6 10 10 C 1.53949 * 111.56638 * 101.23060 * 9 8 7 11 11 C 1.54579 * 102.67602 * 153.88287 * 10 9 8 12 12 N 1.47131 * 107.45098 * 339.26496 * 11 10 9 13 13 C 1.36940 * 125.61090 * 179.03500 * 12 11 10 14 14 H 1.07995 * 120.00247 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99558 * 359.96910 * 13 12 11 16 16 N 1.31615 * 120.00432 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47211 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46981 * 120.00023 * 17 15 13 20 20 H 1.48505 * 109.46876 * 239.99773 * 17 15 13 21 21 C 1.47706 * 108.78628 * 358.99367 * 12 11 10 22 22 C 1.47880 * 127.00658 * 176.14761 * 6 4 2 23 23 C 1.50704 * 109.46944 * 239.99983 * 2 1 3 24 24 C 1.38235 * 120.00186 * 232.97268 * 23 2 1 25 25 C 1.38235 * 120.00089 * 179.74506 * 24 23 2 26 26 C 1.38227 * 119.99852 * 0.53227 * 25 24 23 27 27 C 1.38241 * 120.00320 * 359.74352 * 26 25 24 28 28 C 1.38227 * 119.99911 * 53.25001 * 23 2 1 29 29 H 1.09002 * 109.46888 * 293.51018 * 1 2 3 30 30 H 1.08990 * 109.46875 * 53.51577 * 1 2 3 31 31 H 1.09002 * 109.46953 * 173.51990 * 1 2 3 32 32 H 1.08996 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47006 * 300.00634 * 3 2 1 34 34 H 1.09007 * 109.46732 * 60.00142 * 3 2 1 35 35 H 1.08994 * 110.62428 * 260.05843 * 7 6 4 36 36 H 1.08998 * 110.62699 * 22.92221 * 7 6 4 37 37 H 1.09004 * 110.81097 * 277.95186 * 8 7 6 38 38 H 1.08996 * 110.80822 * 154.42887 * 8 7 6 39 39 H 1.09002 * 110.72472 * 35.62955 * 10 9 8 40 40 H 1.08999 * 110.87139 * 272.20771 * 10 9 8 41 41 H 1.09002 * 109.87261 * 219.75723 * 11 10 9 42 42 H 1.09003 * 109.87342 * 98.77034 * 11 10 9 43 43 H 0.96998 * 120.00714 * 179.97438 * 16 15 13 44 44 H 1.09000 * 110.39406 * 141.42186 * 21 12 11 45 45 H 1.09004 * 110.39283 * 263.80782 * 21 12 11 46 46 H 1.08999 * 110.04784 * 85.86432 * 22 6 4 47 47 H 1.09001 * 110.09099 * 324.42025 * 22 6 4 48 48 H 1.07998 * 119.99807 * 359.97438 * 24 23 2 49 49 H 1.08001 * 119.99989 * 180.29305 * 25 24 23 50 50 H 1.08005 * 120.00270 * 179.76619 * 26 25 24 51 51 H 1.07998 * 120.00256 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00089 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7234 -0.1189 2.0327 6 7 1.7139 -2.0033 1.4394 7 6 0.8211 -2.8476 0.6099 8 6 1.5250 -4.2316 0.6157 9 6 2.0984 -4.3049 2.0348 10 6 1.2297 -5.1853 2.9514 11 6 2.2429 -5.6750 4.0111 12 7 3.5886 -5.5347 3.4329 13 6 4.7638 -5.8443 4.0639 14 1 5.7045 -5.7056 3.5519 15 6 4.7459 -6.3363 5.3618 16 7 3.5996 -6.5047 5.9861 17 14 6.3491 -6.7580 6.2229 18 1 7.4884 -6.4798 5.3119 19 1 6.4835 -5.9332 7.4505 20 1 6.3499 -8.1967 6.5907 21 6 3.4634 -5.0059 2.0595 22 6 2.1829 -2.8684 2.5432 23 6 2.0323 -0.7104 -1.2305 24 6 2.9424 -1.7438 -1.1089 25 6 3.3991 -2.3989 -2.2372 26 6 2.9542 -2.0134 -3.4879 27 6 2.0484 -0.9763 -3.6100 28 6 1.5874 -0.3249 -2.4811 29 1 -0.3633 0.4100 0.9424 30 1 -0.3633 0.6110 -0.8262 31 1 -0.3633 -1.0211 -0.1160 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 -0.1686 -2.9184 1.0609 36 1 0.7525 -2.4533 -0.4039 37 1 2.3227 -4.2634 -0.1264 38 1 0.8054 -5.0326 0.4471 39 1 0.8137 -6.0266 2.3970 40 1 0.4376 -4.5985 3.4165 41 1 2.0505 -6.7204 4.2525 42 1 2.1611 -5.0659 4.9113 43 1 3.5870 -6.8488 6.8929 44 1 4.2608 -4.2920 1.8531 45 1 3.4850 -5.8204 1.3354 46 1 1.5412 -2.7423 3.4153 47 1 3.2135 -2.6228 2.7995 48 1 3.2937 -2.0418 -0.1321 49 1 4.1065 -3.2094 -2.1419 50 1 3.3138 -2.5228 -4.3698 51 1 1.7004 -0.6753 -4.5871 52 1 0.8795 0.4851 -2.5764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041817676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:31 Heat of formation + Delta-G solvation = 26.857495 kcal Electronic energy + Delta-G solvation = -31761.414151 eV Core-core repulsion = 27919.613962 eV Total energy + Delta-G solvation = -3841.800189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.15174 -39.26450 -38.32277 -35.69898 -35.26474 -32.63511 -31.10217 -30.49952 -29.95752 -29.07758 -28.38414 -27.30795 -26.05211 -24.54628 -23.39695 -22.63600 -22.43609 -21.12731 -20.22032 -18.93302 -18.67260 -17.59510 -16.84814 -16.37452 -15.87647 -15.40215 -15.29672 -14.71272 -14.62782 -14.30905 -14.20383 -13.88207 -13.77099 -13.46660 -13.39882 -13.16840 -12.92388 -12.70862 -12.50141 -12.30097 -12.21425 -11.97703 -11.96039 -11.80880 -11.52903 -11.41761 -11.25872 -11.20359 -11.16771 -10.88099 -10.84081 -10.78170 -10.16711 -9.99627 -9.95892 -9.75927 -9.62026 -9.54304 -9.05313 -8.84998 -8.58726 -8.49461 -6.80550 -5.68773 -3.01948 1.15693 1.24904 2.68359 3.03127 3.42074 3.47873 3.50038 3.60553 4.26937 4.36561 4.51878 4.72235 4.76037 4.80176 4.83722 4.89211 4.97814 4.99400 5.06181 5.28740 5.33358 5.37212 5.38760 5.43330 5.51962 5.54763 5.57422 5.63521 5.66821 5.81240 5.82643 5.86153 5.88766 5.90429 5.97690 6.07352 6.09092 6.20482 6.21106 6.30269 6.35235 6.38948 6.39474 6.42933 6.51384 6.57003 6.75535 6.82335 6.83849 7.58495 7.63367 7.66808 7.85076 8.24699 8.27882 9.24656 9.84726 10.50336 11.42901 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003142 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.815978 B = 8909.820820 C = 9214.267382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.123 4.123 4 C 0.540 3.460 5 O -0.536 6.536 6 N -0.617 5.617 7 C 0.094 3.906 8 C -0.119 4.119 9 C -0.084 4.084 10 C -0.131 4.131 11 C 0.177 3.823 12 N -0.605 5.605 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.151 3.849 22 C 0.129 3.871 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.021 0.979 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 11.343 -19.780 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 C -0.180 4.180 4 C 0.328 3.672 5 O -0.412 6.412 6 N -0.351 5.351 7 C -0.029 4.029 8 C -0.157 4.157 9 C -0.085 4.085 10 C -0.170 4.170 11 C 0.053 3.947 12 N -0.331 5.331 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.025 3.975 22 C 0.008 3.992 23 C -0.075 4.075 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.331 11.688 -19.122 24.276 hybrid contribution 0.798 -0.423 0.578 1.072 sum -8.533 11.265 -18.544 23.315 Atomic orbital electron populations 1.22045 0.91879 1.03346 1.02908 1.19748 0.97271 0.96470 0.90607 1.21671 1.02157 0.92123 1.02082 1.19943 0.80089 0.80215 0.86912 1.90724 1.38664 1.64981 1.46879 1.49051 1.47404 1.09918 1.28722 1.22852 0.93493 0.90746 0.95789 1.22587 1.00125 0.96045 0.96953 1.21652 0.98404 0.94133 0.94343 1.22895 0.97971 0.97934 0.98154 1.21210 0.81740 0.99513 0.92270 1.44570 1.02732 1.75892 1.09947 1.19091 0.84382 1.36206 0.95785 0.90481 1.24779 0.97010 1.01617 0.96998 1.69967 1.22919 1.51445 1.12603 0.86067 0.82639 0.77657 0.79553 1.20536 1.21767 1.21813 1.21399 0.92552 0.94736 0.88858 1.21896 1.01234 0.87576 0.88497 1.19515 0.97874 0.96496 0.93574 1.21439 0.96413 0.95326 0.99725 1.21181 0.99807 0.99861 0.92318 1.21176 0.97772 0.97462 0.97471 1.21088 0.97982 0.96604 0.98271 1.20885 1.00332 1.00051 0.91581 0.91696 0.91269 0.91222 0.91725 0.91921 0.91493 0.91129 0.89710 0.90717 0.90032 0.92049 0.92054 0.93980 0.93620 0.93871 0.94437 0.96090 0.91433 0.90038 0.85265 0.85840 0.86186 0.86145 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.80 37.16 0.29 -0.97 16 2 C -0.04 -0.42 0.59 -156.81 -0.09 -0.51 16 3 C -0.12 -1.32 7.64 37.16 0.28 -1.03 16 4 C 0.54 8.16 5.28 -10.98 -0.06 8.10 16 5 O -0.54 -10.32 16.36 5.56 0.09 -10.23 16 6 N -0.62 -8.82 2.19 -169.97 -0.37 -9.19 16 7 C 0.09 1.06 4.33 -1.88 -0.01 1.05 16 8 C -0.12 -1.47 6.11 -25.41 -0.16 -1.62 16 9 C -0.08 -1.36 0.74 -153.85 -0.11 -1.48 16 10 C -0.13 -2.30 5.86 -25.41 -0.15 -2.45 16 11 C 0.18 4.21 5.33 -2.87 -0.02 4.20 16 12 N -0.60 -15.24 3.41 -170.49 -0.58 -15.82 16 13 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -27.16 10.30 55.49 0.57 -26.59 16 17 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.15 3.03 6.03 -3.14 -0.02 3.01 16 22 C 0.13 2.22 6.26 -3.48 -0.02 2.20 16 23 C -0.07 -0.79 3.30 -104.63 -0.34 -1.13 16 24 C -0.11 -1.31 6.64 -39.58 -0.26 -1.57 16 25 C -0.11 -1.17 10.05 -39.59 -0.40 -1.57 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 28 C -0.11 -0.96 8.82 -39.58 -0.35 -1.31 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 31 H 0.07 0.58 5.29 -51.93 -0.27 0.31 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 34 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 35 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.08 0.85 4.29 -51.93 -0.22 0.63 16 37 H 0.07 0.91 7.40 -51.93 -0.38 0.53 16 38 H 0.08 0.90 7.59 -51.93 -0.39 0.51 16 39 H 0.06 0.99 7.74 -51.93 -0.40 0.59 16 40 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 41 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 42 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.04 0.77 7.76 -51.93 -0.40 0.37 16 45 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 46 H 0.07 1.21 7.47 -51.93 -0.39 0.82 16 47 H 0.08 1.65 7.49 -51.93 -0.39 1.26 16 48 H 0.13 1.82 5.72 -52.49 -0.30 1.52 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 51 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 52 H 0.12 0.82 7.21 -52.49 -0.38 0.44 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -32.44 390.23 -10.30 -42.75 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.41 Total: 0.54 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.46 Total: -4.75 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.38 Total: -51.60 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.44 -10.30 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041817676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.604 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds