Wall clock time and date at job start Wed Apr 1 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47474 * 120.00212 * 2 1 3 5 5 O 1.21279 * 120.00414 * 240.42383 * 4 2 1 6 6 N 1.34781 * 119.99870 * 60.42023 * 4 2 1 7 7 C 1.48252 * 127.00455 * 356.10558 * 6 4 2 8 8 C 1.55265 * 103.44910 * 141.57125 * 7 6 4 9 9 C 1.53233 * 102.45968 * 36.19162 * 8 7 6 10 10 C 1.53949 * 111.56638 * 101.23060 * 9 8 7 11 11 C 1.54579 * 102.67602 * 153.88287 * 10 9 8 12 12 N 1.47131 * 107.45098 * 339.26496 * 11 10 9 13 13 C 1.36940 * 125.61090 * 179.03500 * 12 11 10 14 14 H 1.07995 * 120.00247 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99558 * 359.96910 * 13 12 11 16 16 N 1.31615 * 120.00432 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47211 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46981 * 120.00023 * 17 15 13 20 20 H 1.48505 * 109.46876 * 239.99773 * 17 15 13 21 21 C 1.47706 * 108.78628 * 358.99367 * 12 11 10 22 22 C 1.47880 * 127.00658 * 176.14761 * 6 4 2 23 23 C 1.50704 * 109.46944 * 239.99983 * 2 1 3 24 24 C 1.38235 * 120.00186 * 232.97268 * 23 2 1 25 25 C 1.38235 * 120.00089 * 179.74506 * 24 23 2 26 26 C 1.38227 * 119.99852 * 0.53227 * 25 24 23 27 27 C 1.38241 * 120.00320 * 359.74352 * 26 25 24 28 28 C 1.38227 * 119.99911 * 53.25001 * 23 2 1 29 29 H 1.09002 * 109.46888 * 293.51018 * 1 2 3 30 30 H 1.08990 * 109.46875 * 53.51577 * 1 2 3 31 31 H 1.09002 * 109.46953 * 173.51990 * 1 2 3 32 32 H 1.08996 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47006 * 300.00634 * 3 2 1 34 34 H 1.09007 * 109.46732 * 60.00142 * 3 2 1 35 35 H 1.08994 * 110.62428 * 260.05843 * 7 6 4 36 36 H 1.08998 * 110.62699 * 22.92221 * 7 6 4 37 37 H 1.09004 * 110.81097 * 277.95186 * 8 7 6 38 38 H 1.08996 * 110.80822 * 154.42887 * 8 7 6 39 39 H 1.09002 * 110.72472 * 35.62955 * 10 9 8 40 40 H 1.08999 * 110.87139 * 272.20771 * 10 9 8 41 41 H 1.09002 * 109.87261 * 219.75723 * 11 10 9 42 42 H 1.09003 * 109.87342 * 98.77034 * 11 10 9 43 43 H 0.96998 * 120.00714 * 179.97438 * 16 15 13 44 44 H 1.09000 * 110.39406 * 141.42186 * 21 12 11 45 45 H 1.09004 * 110.39283 * 263.80782 * 21 12 11 46 46 H 1.08999 * 110.04784 * 85.86432 * 22 6 4 47 47 H 1.09001 * 110.09099 * 324.42025 * 22 6 4 48 48 H 1.07998 * 119.99807 * 359.97438 * 24 23 2 49 49 H 1.08001 * 119.99989 * 180.29305 * 25 24 23 50 50 H 1.08005 * 120.00270 * 179.76619 * 26 25 24 51 51 H 1.07998 * 120.00256 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00089 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7234 -0.1189 2.0327 6 7 1.7139 -2.0033 1.4394 7 6 0.8211 -2.8476 0.6099 8 6 1.5250 -4.2316 0.6157 9 6 2.0984 -4.3049 2.0348 10 6 1.2297 -5.1853 2.9514 11 6 2.2429 -5.6750 4.0111 12 7 3.5886 -5.5347 3.4329 13 6 4.7638 -5.8443 4.0639 14 1 5.7045 -5.7056 3.5519 15 6 4.7459 -6.3363 5.3618 16 7 3.5996 -6.5047 5.9861 17 14 6.3491 -6.7580 6.2229 18 1 7.4884 -6.4798 5.3119 19 1 6.4835 -5.9332 7.4505 20 1 6.3499 -8.1967 6.5907 21 6 3.4634 -5.0059 2.0595 22 6 2.1829 -2.8684 2.5432 23 6 2.0323 -0.7104 -1.2305 24 6 2.9424 -1.7438 -1.1089 25 6 3.3991 -2.3989 -2.2372 26 6 2.9542 -2.0134 -3.4879 27 6 2.0484 -0.9763 -3.6100 28 6 1.5874 -0.3249 -2.4811 29 1 -0.3633 0.4100 0.9424 30 1 -0.3633 0.6110 -0.8262 31 1 -0.3633 -1.0211 -0.1160 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 -0.1686 -2.9184 1.0609 36 1 0.7525 -2.4533 -0.4039 37 1 2.3227 -4.2634 -0.1264 38 1 0.8054 -5.0326 0.4471 39 1 0.8137 -6.0266 2.3970 40 1 0.4376 -4.5985 3.4165 41 1 2.0505 -6.7204 4.2525 42 1 2.1611 -5.0659 4.9113 43 1 3.5870 -6.8488 6.8929 44 1 4.2608 -4.2920 1.8531 45 1 3.4850 -5.8204 1.3354 46 1 1.5412 -2.7423 3.4153 47 1 3.2135 -2.6228 2.7995 48 1 3.2937 -2.0418 -0.1321 49 1 4.1065 -3.2094 -2.1419 50 1 3.3138 -2.5228 -4.3698 51 1 1.7004 -0.6753 -4.5871 52 1 0.8795 0.4851 -2.5764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041817676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:29 Heat of formation + Delta-G solvation = 9.105799 kcal Electronic energy + Delta-G solvation = -31762.183922 eV Core-core repulsion = 27919.613962 eV Total energy + Delta-G solvation = -3842.569960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.20821 -40.45398 -39.43409 -37.26058 -36.18647 -34.47047 -32.15965 -31.77661 -30.69367 -30.63649 -29.80302 -28.21353 -27.53988 -26.20610 -24.40777 -23.71432 -23.34552 -22.17841 -21.97633 -20.24002 -19.84557 -18.80814 -18.50239 -17.43191 -16.99447 -16.78436 -16.41096 -16.15908 -15.87214 -15.56159 -15.41760 -15.13338 -14.82268 -14.58250 -14.50109 -14.36609 -14.11352 -13.85395 -13.76991 -13.32669 -13.24149 -13.09491 -13.00303 -12.94680 -12.92574 -12.81573 -12.80009 -12.62340 -12.54332 -12.09755 -12.01865 -11.96202 -11.87045 -11.62080 -11.57049 -11.39979 -11.21677 -10.77752 -10.72226 -9.76031 -9.73073 -9.56821 -8.90200 -7.87305 -5.22026 0.45060 0.54808 1.41517 1.42989 1.52675 1.52873 1.89030 2.46434 2.90414 3.26717 3.32563 3.51821 3.56297 3.60798 3.68941 3.81950 3.99295 4.09126 4.16951 4.22054 4.22614 4.26969 4.36122 4.40075 4.58614 4.62677 4.64704 4.67364 4.68999 4.71949 4.80567 4.84045 4.84468 4.88389 4.89630 4.96521 5.01697 5.05181 5.11324 5.13919 5.20652 5.22113 5.28009 5.32077 5.38524 5.43628 5.63423 5.68426 5.69089 5.70262 5.77753 6.14400 6.18414 6.52713 7.06638 7.09242 7.76022 8.39856 9.22771 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003142 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.815978 B = 8909.820820 C = 9214.267382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.122 4.122 4 C 0.532 3.468 5 O -0.593 6.593 6 N -0.612 5.612 7 C 0.098 3.902 8 C -0.108 4.108 9 C -0.069 4.069 10 C -0.113 4.113 11 C 0.184 3.816 12 N -0.627 5.627 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.065 4.065 16 N -0.948 5.948 17 Si 0.975 3.025 18 H -0.268 1.268 19 H -0.294 1.294 20 H -0.288 1.288 21 C 0.149 3.851 22 C 0.135 3.865 23 C -0.082 4.082 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.104 4.104 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.008 0.992 42 H 0.004 0.996 43 H 0.246 0.754 44 H 0.024 0.976 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.095 0.905 49 H 0.121 0.879 50 H 0.141 0.859 51 H 0.151 0.849 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 12.018 -23.991 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.179 4.179 4 C 0.323 3.677 5 O -0.473 6.473 6 N -0.344 5.344 7 C -0.023 4.023 8 C -0.146 4.146 9 C -0.071 4.071 10 C -0.151 4.151 11 C 0.059 3.941 12 N -0.353 5.353 13 C -0.371 4.371 14 H 0.094 0.906 15 C -0.258 4.258 16 N -0.598 5.598 17 Si 0.803 3.197 18 H -0.193 1.193 19 H -0.221 1.221 20 H -0.214 1.214 21 C 0.024 3.976 22 C 0.012 3.988 23 C -0.082 4.082 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.022 0.978 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.139 0.861 50 H 0.159 0.841 51 H 0.169 0.831 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.641 12.353 -23.394 28.903 hybrid contribution 1.597 -0.600 1.848 2.515 sum -10.043 11.754 -21.546 26.519 Atomic orbital electron populations 1.22090 0.89351 1.04547 1.03919 1.19752 0.99082 0.95834 0.88584 1.21691 1.00605 0.92345 1.03262 1.20897 0.79030 0.80155 0.87643 1.90687 1.41176 1.66322 1.49118 1.49078 1.47488 1.09845 1.28031 1.23078 0.93392 0.89267 0.96596 1.22592 1.00789 0.97753 0.93513 1.21475 0.95992 0.92510 0.97077 1.22766 0.96694 0.99071 0.96539 1.20980 0.83095 0.96867 0.93126 1.44873 1.02576 1.75966 1.11921 1.19442 0.85640 1.35679 0.96341 0.90585 1.25598 1.00196 1.02180 0.97791 1.70186 1.24739 1.52355 1.12475 0.85064 0.79317 0.77148 0.78157 1.19286 1.22121 1.21441 1.21566 0.94591 0.94860 0.86623 1.21592 0.98468 0.89144 0.89593 1.19463 0.98229 0.96406 0.94097 1.21237 0.98028 0.97059 0.98719 1.21243 1.00191 1.00109 0.92784 1.21455 0.97492 0.97634 0.97252 1.21471 0.96834 0.95538 0.99468 1.21158 1.00193 1.00340 0.90466 0.92415 0.88085 0.90398 0.94248 0.88428 0.92501 0.88900 0.87559 0.90384 0.87100 0.89277 0.90092 0.97360 0.97816 0.94453 0.95816 0.94676 0.92600 0.94549 0.88666 0.86073 0.84150 0.83114 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.80 71.98 0.56 -1.42 16 2 C -0.03 -0.61 0.59 -53.67 -0.03 -0.65 16 3 C -0.12 -2.48 7.64 71.98 0.55 -1.93 16 4 C 0.53 16.52 5.28 87.66 0.46 16.99 16 5 O -0.59 -24.52 16.36 -3.03 -0.05 -24.57 16 6 N -0.61 -17.60 2.19 -810.05 -1.78 -19.38 16 7 C 0.10 1.94 4.33 86.82 0.38 2.31 16 8 C -0.11 -2.39 6.11 31.45 0.19 -2.20 16 9 C -0.07 -2.24 0.74 -51.76 -0.04 -2.28 16 10 C -0.11 -3.86 5.86 31.45 0.18 -3.68 16 11 C 0.18 9.17 5.33 86.80 0.46 9.64 16 12 N -0.63 -33.10 3.41 -693.31 -2.36 -35.46 16 13 C -0.24 -14.15 10.28 84.03 0.86 -13.29 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 15 C -0.06 -3.82 5.49 84.86 0.47 -3.35 16 16 N -0.95 -58.66 10.30 21.65 0.22 -58.44 16 17 Si 0.97 47.72 29.55 68.60 2.03 49.75 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 C 0.15 6.16 6.03 86.30 0.52 6.68 16 22 C 0.14 4.88 6.26 85.99 0.54 5.42 16 23 C -0.08 -1.53 3.30 -19.87 -0.07 -1.59 16 24 C -0.13 -3.01 6.64 22.27 0.15 -2.86 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.12 -1.32 10.05 22.27 0.22 -1.09 16 28 C -0.10 -1.32 8.82 22.27 0.20 -1.12 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.80 7.30 -2.39 -0.02 0.78 16 31 H 0.08 0.96 5.29 -2.39 -0.01 0.95 16 32 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.10 1.26 7.82 -2.39 -0.02 1.24 16 34 H 0.06 1.25 8.10 -2.38 -0.02 1.24 16 35 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.11 1.74 4.29 -2.39 -0.01 1.73 16 37 H 0.08 1.74 7.40 -2.39 -0.02 1.72 16 38 H 0.11 1.91 7.59 -2.39 -0.02 1.89 16 39 H 0.09 2.62 7.74 -2.39 -0.02 2.60 16 40 H 0.08 2.50 7.69 -2.39 -0.02 2.48 16 41 H 0.01 0.46 7.50 -2.39 -0.02 0.44 16 42 H 0.00 0.20 7.38 -2.39 -0.02 0.19 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.02 1.03 7.76 -2.39 -0.02 1.01 16 45 H 0.04 1.38 8.04 -2.38 -0.02 1.36 16 46 H 0.06 2.12 7.47 -2.39 -0.02 2.10 16 47 H 0.04 1.62 7.49 -2.39 -0.02 1.61 16 48 H 0.10 2.81 5.72 -2.91 -0.02 2.79 16 49 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 50 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 52 H 0.15 1.07 7.21 -2.91 -0.02 1.05 16 Total: -1.00 -78.61 390.23 5.02 -73.58 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.90 Total: 12.57 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.06 Total: 1.94 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -3.91 Total: -113.27 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -78.61 5.02 -73.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041817676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.689 kcal (2) G-P(sol) polarization free energy of solvation -78.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds