Wall clock time and date at job start Wed Apr 1 2020 01:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38236 * 119.99883 * 2 1 4 4 C 1.38237 * 119.99441 * 180.22118 * 3 2 1 5 5 C 1.38226 * 120.00241 * 359.81989 * 4 3 2 6 6 C 1.38238 * 120.00332 * 359.96987 * 5 4 3 7 7 C 1.50700 * 120.00115 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.99802 * 179.77993 * 2 1 3 9 9 C 1.50700 * 120.00394 * 0.02562 * 8 2 1 10 10 C 1.50702 * 109.47086 * 269.72543 * 9 8 2 11 11 O 1.21275 * 120.00027 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99801 * 179.97438 * 10 9 8 13 13 C 1.47156 * 121.22457 * 359.97438 * 12 10 9 14 14 C 1.52832 * 107.97885 * 122.42530 * 13 12 10 15 15 C 1.53095 * 110.57934 * 57.34513 * 14 13 12 16 16 H 1.08997 * 112.49136 * 71.39317 * 15 14 13 17 17 C 1.56031 * 106.38562 * 195.44483 * 15 14 13 18 18 C 1.54503 * 102.61250 * 78.38806 * 17 15 14 19 19 N 1.47430 * 107.14874 * 22.84958 * 18 17 15 20 20 C 1.36930 * 126.05996 * 181.65123 * 19 18 17 21 21 H 1.08000 * 120.00498 * 179.97438 * 20 19 18 22 22 C 1.38820 * 120.00069 * 359.97106 * 20 19 18 23 23 N 1.31617 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47324 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46927 * 120.00494 * 24 22 20 27 27 H 1.48498 * 109.46880 * 240.00087 * 24 22 20 28 28 C 1.46465 * 107.88119 * 1.61168 * 19 18 17 29 29 H 1.09005 * 108.42253 * 89.90722 * 28 19 18 30 30 C 1.46764 * 121.21570 * 179.71534 * 12 10 9 31 31 H 1.08996 * 109.47476 * 270.21375 * 1 2 3 32 32 H 1.08998 * 109.46968 * 30.21664 * 1 2 3 33 33 H 1.08996 * 109.46991 * 150.21046 * 1 2 3 34 34 H 1.08003 * 120.00141 * 0.05905 * 3 2 1 35 35 H 1.08007 * 119.99501 * 179.83204 * 4 3 2 36 36 H 1.07999 * 119.99981 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47319 * 269.97680 * 7 6 5 38 38 H 1.08999 * 109.47259 * 29.98211 * 7 6 5 39 39 H 1.09002 * 109.46779 * 149.97862 * 7 6 5 40 40 H 1.08998 * 109.47871 * 149.72045 * 9 8 2 41 41 H 1.09008 * 109.47139 * 29.72283 * 9 8 2 42 42 H 1.08995 * 109.75818 * 242.04980 * 13 12 10 43 43 H 1.09003 * 109.75654 * 2.75578 * 13 12 10 44 44 H 1.08998 * 109.25413 * 177.62838 * 14 13 12 45 45 H 1.08995 * 109.25677 * 297.10062 * 14 13 12 46 46 H 1.09005 * 110.78367 * 196.66527 * 17 15 14 47 47 H 1.09003 * 110.78590 * 319.91617 * 17 15 14 48 48 H 1.09006 * 109.90316 * 142.23156 * 18 17 15 49 49 H 1.08997 * 109.90187 * 263.28818 * 18 17 15 50 50 H 0.96994 * 119.99922 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.22844 * 353.13523 * 30 12 10 52 52 H 1.09004 * 109.22494 * 112.49879 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0046 5 6 4.2717 0.0000 -0.0055 6 6 3.5805 -1.1972 -0.0011 7 6 4.3341 -2.5023 -0.0014 8 6 2.1982 -1.1971 0.0046 9 6 1.4447 -2.5022 0.0090 10 6 1.1989 -2.9355 1.4313 11 8 1.5968 -2.2521 2.3508 12 7 0.5369 -4.0825 1.6815 13 6 0.0419 -4.9320 0.5865 14 6 0.6567 -6.3213 0.7523 15 6 0.3102 -6.9028 2.1254 16 1 -0.7388 -7.1879 2.2048 17 6 1.2829 -8.1011 2.3542 18 6 2.5952 -7.3967 2.7652 19 7 2.2298 -6.0676 3.2880 20 6 3.1008 -5.1085 3.7315 21 1 2.7244 -4.1641 4.0957 22 6 4.4676 -5.3503 3.7129 23 7 4.9264 -6.5011 3.2686 24 14 5.6558 -4.0417 4.3172 25 1 4.8931 -2.8474 4.7610 26 1 6.4439 -4.5767 5.4565 27 1 6.5752 -3.6610 3.2150 28 6 0.7701 -5.9544 3.2482 29 1 0.3702 -6.3207 4.1938 30 6 0.2882 -4.5330 3.0559 31 1 -0.3634 0.0038 1.0276 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8918 -0.5105 34 1 1.6582 2.1325 0.0010 35 1 4.1206 2.1324 -0.0074 36 1 5.3517 -0.0001 -0.0095 37 1 4.5119 -2.8189 -1.0291 38 1 5.2884 -2.3710 0.5086 39 1 3.7469 -3.2610 0.5160 40 1 2.0318 -3.2625 -0.5061 41 1 0.4903 -2.3725 -0.5014 42 1 -1.0447 -5.0014 0.6365 43 1 0.3402 -4.5081 -0.3724 44 1 0.2704 -6.9804 -0.0251 45 1 1.7400 -6.2487 0.6563 46 1 0.9218 -8.7447 3.1565 47 1 1.4179 -8.6707 1.4347 48 1 3.0996 -7.9744 3.5398 49 1 3.2469 -7.2910 1.8979 50 1 5.8815 -6.6699 3.2553 51 1 0.8158 -3.8781 3.7493 52 1 -0.7812 -4.4853 3.2613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:01 Heat of formation + Delta-G solvation = -4.759096 kcal Electronic energy + Delta-G solvation = -32402.470274 eV Core-core repulsion = 28559.299086 eV Total energy + Delta-G solvation = -3843.171187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.58490 -40.58653 -39.24982 -36.46584 -34.63851 -34.50181 -34.33038 -32.79453 -31.09676 -30.04155 -29.54812 -27.58851 -27.52963 -26.48046 -25.21871 -23.83504 -22.33389 -21.72950 -21.61461 -20.77238 -19.57577 -18.44702 -18.09695 -17.22403 -17.19640 -16.88897 -16.39289 -16.11729 -15.84187 -15.54923 -15.41075 -15.19710 -14.74619 -14.45755 -14.16307 -14.10801 -13.98895 -13.83600 -13.81120 -13.75146 -13.60133 -13.29975 -13.11303 -13.06899 -12.96127 -12.67722 -12.54927 -12.52081 -12.40282 -12.30154 -12.06376 -11.79511 -11.70823 -11.66009 -11.37442 -11.24820 -11.10350 -10.68194 -10.66579 -9.48197 -9.43758 -9.41133 -8.79282 -7.84854 -5.13283 0.42926 0.47507 1.29843 1.32558 1.44362 1.82024 2.24999 2.45168 2.84057 3.34105 3.54213 3.66823 3.85163 3.88035 3.93046 3.95494 4.03430 4.10109 4.15128 4.20058 4.34492 4.36822 4.41727 4.51988 4.54482 4.56330 4.63026 4.64765 4.70127 4.75507 4.75969 4.80165 4.85499 4.90335 4.93795 4.94939 5.01216 5.05988 5.17394 5.19070 5.25564 5.34403 5.35953 5.54480 5.58007 5.64029 5.68551 5.74009 5.76092 5.78156 5.83577 6.16074 6.23527 6.66286 7.15941 7.42402 7.83842 8.46556 9.25984 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.005230 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.852586 B = 5352.322798 C = 7031.983005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.146 4.146 6 C -0.087 4.087 7 C -0.111 4.111 8 C -0.081 4.081 9 C -0.095 4.095 10 C 0.517 3.483 11 O -0.583 6.583 12 N -0.599 5.599 13 C 0.106 3.894 14 C -0.121 4.121 15 C -0.083 4.083 16 H 0.123 0.877 17 C -0.131 4.131 18 C 0.187 3.813 19 N -0.604 5.604 20 C -0.193 4.193 21 H 0.062 0.938 22 C -0.057 4.057 23 N -0.946 5.946 24 Si 0.942 3.058 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.292 1.292 28 C 0.142 3.858 29 H 0.022 0.978 30 C 0.118 3.882 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.082 0.918 48 H -0.004 1.004 49 H 0.009 0.991 50 H 0.242 0.758 51 H 0.046 0.954 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 6.792 -13.565 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.136 4.136 5 C -0.164 4.164 6 C -0.087 4.087 7 C -0.167 4.167 8 C -0.081 4.081 9 C -0.134 4.134 10 C 0.306 3.694 11 O -0.462 6.462 12 N -0.332 5.332 13 C -0.015 4.015 14 C -0.159 4.159 15 C -0.102 4.102 16 H 0.141 0.859 17 C -0.169 4.169 18 C 0.062 3.938 19 N -0.328 5.328 20 C -0.323 4.323 21 H 0.080 0.920 22 C -0.250 4.250 23 N -0.597 5.597 24 Si 0.774 3.226 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.035 3.965 29 H 0.039 0.961 30 C -0.006 4.006 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.014 0.986 49 H 0.027 0.973 50 H 0.051 0.949 51 H 0.065 0.935 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.046 7.182 -13.041 20.468 hybrid contribution 1.992 0.374 1.160 2.335 sum -12.054 7.556 -11.881 18.535 Atomic orbital electron populations 1.20865 0.89496 1.04226 1.02204 1.20047 0.97410 0.92287 0.98379 1.21288 0.94365 0.98045 1.01600 1.21374 0.94819 0.98081 0.99375 1.21185 1.00254 0.92369 1.02632 1.19918 0.93957 0.95568 0.99273 1.20733 0.99156 0.94456 1.02390 1.19218 0.92651 0.94427 1.01844 1.20738 1.03254 0.95760 0.93630 1.20807 0.76404 0.80610 0.91559 1.90675 1.51668 1.55670 1.48209 1.48003 1.55963 1.21617 1.07587 1.22020 1.00190 0.89801 0.89530 1.21818 1.00238 0.96761 0.97072 1.22405 0.99567 0.94090 0.94151 0.85932 1.23036 0.95310 0.97205 1.01314 1.20952 0.93240 0.84618 0.95012 1.44452 1.00851 1.13877 1.73663 1.19016 0.87199 0.94239 1.31819 0.92039 1.25143 0.97886 0.98436 1.03523 1.70123 1.11641 1.23315 1.54629 0.85509 0.80038 0.79463 0.77592 1.21404 1.21692 1.21890 1.21004 0.84472 0.94084 0.96922 0.96051 1.21218 0.99969 0.95579 0.83803 0.92266 0.89261 0.90123 0.83615 0.83767 0.85713 0.89103 0.93198 0.93833 0.87969 0.84730 0.87692 0.88235 0.87914 0.94821 0.91635 0.89920 0.98602 0.97274 0.94868 0.93512 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.60 71.24 0.68 -1.56 16 2 C -0.08 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.14 -3.37 9.70 22.27 0.22 -3.16 16 4 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 5 C -0.15 -4.49 9.70 22.27 0.22 -4.28 16 6 C -0.09 -2.98 5.88 -19.86 -0.12 -3.10 16 7 C -0.11 -4.00 9.19 71.24 0.65 -3.34 16 8 C -0.08 -2.55 4.37 -19.87 -0.09 -2.64 16 9 C -0.09 -2.67 3.11 29.10 0.09 -2.58 16 10 C 0.52 19.09 7.31 87.66 0.64 19.73 16 11 O -0.58 -27.92 15.49 -3.02 -0.05 -27.97 16 12 N -0.60 -19.44 2.97 -823.01 -2.44 -21.88 16 13 C 0.11 2.30 6.36 86.20 0.55 2.85 16 14 C -0.12 -3.09 5.04 30.57 0.15 -2.93 16 15 C -0.08 -2.33 3.68 -9.37 -0.03 -2.37 16 16 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.13 -4.33 6.32 32.16 0.20 -4.13 16 18 C 0.19 9.04 4.61 86.71 0.40 9.44 16 19 N -0.60 -30.44 3.20 -674.04 -2.15 -32.60 16 20 C -0.19 -11.31 9.70 84.04 0.81 -10.50 16 21 H 0.06 3.83 6.51 -2.91 -0.02 3.81 16 22 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 23 N -0.95 -58.82 10.38 21.65 0.22 -58.60 16 24 Si 0.94 51.22 29.55 68.60 2.03 53.25 16 25 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16 26 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 27 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 28 C 0.14 5.45 2.97 44.78 0.13 5.58 16 29 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 30 C 0.12 4.28 5.68 85.78 0.49 4.77 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.08 1.33 5.94 -2.39 -0.01 1.32 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 39 H 0.04 1.84 6.37 -2.39 -0.02 1.82 16 40 H 0.10 2.81 6.36 -2.39 -0.02 2.79 16 41 H 0.14 2.63 5.69 -2.38 -0.01 2.61 16 42 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.72 6.02 -2.39 -0.01 1.71 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.20 6.85 -2.39 -0.02 1.18 16 46 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.08 2.38 7.98 -2.39 -0.02 2.36 16 48 H 0.00 -0.24 7.57 -2.38 -0.02 -0.26 16 49 H 0.01 0.50 7.05 -2.39 -0.02 0.48 16 50 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 51 H 0.05 2.15 5.54 -2.39 -0.01 2.14 16 52 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -81.98 393.22 4.10 -77.88 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.91 Total: 16.32 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.58 Total: -6.40 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -4.37 Total: -113.08 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.03 Total: 53.25 kcal Total: -81.98 4.10 -77.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.121 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds