Wall clock time and date at job start Wed Apr 1 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38224 * 120.00345 * 2 1 4 4 C 1.38237 * 119.99855 * 180.23256 * 3 2 1 5 5 C 1.38234 * 120.00153 * 359.80687 * 4 3 2 6 6 C 1.38236 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00069 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99877 * 359.97221 * 6 5 4 9 9 C 1.50695 * 119.99954 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47364 * 90.00047 * 9 8 6 11 11 O 1.21281 * 119.99535 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99825 * 180.02562 * 10 9 8 13 13 C 1.46586 * 119.75557 * 359.97438 * 12 10 9 14 14 C 1.53890 * 110.71598 * 227.71652 * 13 12 10 15 15 C 1.51982 * 107.28277 * 308.19346 * 14 13 12 16 16 H 1.08994 * 111.01714 * 303.47638 * 15 14 13 17 17 C 1.53700 * 115.00185 * 176.26093 * 15 14 13 18 18 C 1.55297 * 101.81655 * 206.53992 * 17 15 14 19 19 N 1.48147 * 107.04350 * 22.44190 * 18 17 15 20 20 C 1.36939 * 126.40192 * 184.99895 * 19 18 17 21 21 H 1.07995 * 120.00534 * 173.05890 * 20 19 18 22 22 C 1.38819 * 119.99649 * 353.06757 * 20 19 18 23 23 N 1.31621 * 119.99828 * 5.76528 * 22 20 19 24 24 Si 1.86797 * 119.99917 * 185.76649 * 22 20 19 25 25 H 1.48495 * 109.47255 * 94.98425 * 24 22 20 26 26 H 1.48504 * 109.47343 * 214.98676 * 24 22 20 27 27 H 1.48508 * 109.47281 * 334.98663 * 24 22 20 28 28 C 1.46084 * 107.65088 * 4.30852 * 19 18 17 29 29 H 1.09000 * 109.03097 * 87.42179 * 28 19 18 30 30 C 1.47800 * 119.74742 * 179.72536 * 12 10 9 31 31 H 1.09001 * 109.46821 * 270.21408 * 1 2 3 32 32 H 1.09005 * 109.46690 * 30.20850 * 1 2 3 33 33 H 1.08997 * 109.47615 * 150.20785 * 1 2 3 34 34 H 1.07999 * 120.00176 * 0.06108 * 3 2 1 35 35 H 1.07999 * 119.99863 * 179.83674 * 4 3 2 36 36 H 1.08005 * 120.00115 * 180.02562 * 5 4 3 37 37 H 1.09011 * 109.46960 * 269.97454 * 7 6 5 38 38 H 1.09002 * 109.47201 * 29.97229 * 7 6 5 39 39 H 1.08997 * 109.47437 * 149.97804 * 7 6 5 40 40 H 1.09007 * 109.47324 * 329.99752 * 9 8 6 41 41 H 1.09004 * 109.47514 * 210.00344 * 9 8 6 42 42 H 1.09001 * 109.23005 * 348.03337 * 13 12 10 43 43 H 1.09006 * 109.23163 * 107.39584 * 13 12 10 44 44 H 1.08998 * 109.88972 * 67.63275 * 14 13 12 45 45 H 1.08992 * 109.89825 * 188.67577 * 14 13 12 46 46 H 1.08999 * 110.96352 * 324.67002 * 17 15 14 47 47 H 1.09005 * 110.96480 * 88.36875 * 17 15 14 48 48 H 1.09000 * 109.92408 * 141.79737 * 18 17 15 49 49 H 1.09001 * 109.91904 * 263.09486 * 18 17 15 50 50 H 0.96996 * 119.99475 * 180.02562 * 23 22 20 51 51 H 1.09004 * 110.06460 * 247.98734 * 30 12 10 52 52 H 1.08997 * 110.06697 * 9.55116 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1969 -0.0049 5 6 4.2717 -0.0003 -0.0057 6 6 3.5805 -1.1974 -0.0011 7 6 4.3338 -2.5025 -0.0026 8 6 2.1981 -1.1973 0.0049 9 6 1.4445 -2.5023 0.0104 10 6 1.1994 -2.9348 1.4331 11 8 1.5979 -2.2509 2.3519 12 7 0.5383 -4.0821 1.6841 13 6 0.0596 -4.9048 0.5694 14 6 -1.4069 -5.3170 0.7876 15 6 -1.5019 -5.9306 2.1748 16 1 -0.8107 -6.7667 2.2805 17 6 -2.9205 -6.3263 2.6143 18 6 -2.8120 -6.2327 4.1607 19 7 -1.6791 -5.3270 4.4625 20 6 -1.1749 -5.0419 5.7033 21 1 -0.2743 -4.4535 5.7981 22 6 -1.8215 -5.5092 6.8394 23 7 -2.8522 -6.3195 6.7235 24 14 -1.2287 -4.9881 8.5324 25 1 -2.0184 -3.8187 8.9951 26 1 -1.4041 -6.1127 9.4862 27 1 0.2079 -4.6184 8.4618 28 6 -1.1817 -4.8018 3.1933 29 1 -1.7457 -3.9058 2.9339 30 6 0.3063 -4.5041 3.0815 31 1 -0.3633 0.0038 1.0277 32 1 -0.3633 0.8882 -0.5171 33 1 -0.3634 -0.8918 -0.5106 34 1 1.6583 2.1324 0.0010 35 1 4.1206 2.1322 -0.0075 36 1 5.3517 -0.0004 -0.0091 37 1 4.5107 -2.8188 -1.0307 38 1 5.2887 -2.3714 0.5065 39 1 3.7471 -3.2613 0.5151 40 1 2.0313 -3.2629 -0.5047 41 1 0.4899 -2.3728 -0.4996 42 1 0.1384 -4.3354 -0.3568 43 1 0.6766 -5.8002 0.4930 44 1 -2.0518 -4.4404 0.7248 45 1 -1.7022 -6.0491 0.0360 46 1 -3.6583 -5.6209 2.2319 47 1 -3.1568 -7.3430 2.3003 48 1 -3.7343 -5.8243 4.5738 49 1 -2.6197 -7.2204 4.5799 50 1 -3.3042 -6.6457 7.5173 51 1 0.8870 -5.3996 3.3030 52 1 0.5804 -3.7007 3.7652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042081073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:35 Heat of formation + Delta-G solvation = 12.262818 kcal Electronic energy + Delta-G solvation = -30950.714977 eV Core-core repulsion = 27108.281916 eV Total energy + Delta-G solvation = -3842.433062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.56695 -39.47257 -38.00307 -35.33213 -33.67083 -33.45151 -32.86820 -31.23576 -29.96301 -28.75528 -28.27916 -26.73128 -26.56799 -24.66570 -23.66903 -22.24865 -21.29083 -20.77456 -20.08674 -19.65556 -18.75641 -17.09508 -16.62739 -16.33232 -16.15489 -15.46218 -14.93573 -14.81406 -14.50306 -14.34201 -14.14201 -13.89993 -13.57348 -13.29672 -13.22181 -13.05980 -13.01359 -12.87778 -12.75546 -12.70295 -12.32773 -12.22944 -11.90381 -11.71542 -11.62751 -11.47909 -11.31641 -10.98355 -10.96906 -10.88490 -10.78366 -10.73544 -10.12343 -9.95215 -9.87430 -9.69121 -9.61659 -9.45704 -8.61538 -8.59955 -8.57450 -8.38826 -6.82967 -5.71840 -3.04402 1.29292 1.34405 2.81523 3.15112 3.43093 3.49130 3.50689 3.70270 4.50894 4.53047 4.67839 4.71390 4.79687 4.86409 4.91067 4.97468 5.01883 5.16051 5.19015 5.23654 5.33461 5.39095 5.46484 5.47835 5.56723 5.57195 5.60663 5.63728 5.68362 5.74732 5.77233 5.81370 5.91795 6.01465 6.06723 6.08383 6.12862 6.15482 6.16578 6.39204 6.43419 6.47548 6.49541 6.56075 6.61493 6.72105 6.76255 6.98397 7.06479 7.55804 7.59500 7.63102 7.81997 8.24101 8.39802 9.20626 9.83217 10.49813 11.41204 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003056 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.249368 B = 9159.597982 C =10152.379833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.117 4.117 8 C -0.064 4.064 9 C -0.107 4.107 10 C 0.513 3.487 11 O -0.530 6.530 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.120 4.120 15 C -0.112 4.112 16 H 0.075 0.925 17 C -0.138 4.138 18 C 0.179 3.821 19 N -0.593 5.593 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.156 3.844 29 H 0.025 0.975 30 C 0.117 3.883 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.042 0.958 49 H 0.048 0.952 50 H 0.252 0.748 51 H 0.068 0.932 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 7.010 -20.790 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.300 3.700 11 O -0.406 6.406 12 N -0.343 5.343 13 C -0.016 4.016 14 C -0.159 4.159 15 C -0.132 4.132 16 H 0.094 0.906 17 C -0.176 4.176 18 C 0.055 3.945 19 N -0.318 5.318 20 C -0.357 4.357 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.047 3.953 29 H 0.042 0.958 30 C -0.006 4.006 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.744 7.310 -20.031 23.046 hybrid contribution 0.213 0.179 0.997 1.035 sum 8.957 7.490 -19.033 22.329 Atomic orbital electron populations 1.20881 0.91363 1.02414 1.02911 1.19688 0.95906 0.92558 0.98479 1.20926 0.94249 0.97240 1.02074 1.21055 0.94294 0.97802 1.00170 1.20921 0.99482 0.91967 1.02209 1.19670 0.92940 0.95431 0.98745 1.20825 1.00060 0.94530 1.01891 1.18985 0.92751 0.93237 1.01484 1.20805 1.02007 0.96190 0.95654 1.20414 0.78161 0.80560 0.90885 1.90727 1.50425 1.53028 1.46392 1.48296 1.55948 1.22381 1.07658 1.21736 0.95849 0.95253 0.88744 1.21814 0.95237 1.00858 0.97967 1.22245 0.98354 0.98755 0.93801 0.90622 1.22716 0.95235 0.99856 0.99799 1.21516 0.90817 0.94666 0.87485 1.44337 1.35435 1.52056 0.99974 1.19062 1.06804 1.28321 0.81515 0.90326 1.24793 0.97867 0.99721 0.97793 1.69954 1.23391 1.35764 1.27663 0.86150 0.78137 0.77701 0.84156 1.21595 1.21788 1.20528 1.21149 0.92024 0.94386 0.87711 0.95792 1.21768 0.97686 1.00704 0.80398 0.90658 0.91573 0.91498 0.86264 0.86306 0.86314 0.91194 0.91436 0.91545 0.88200 0.87897 0.90417 0.91705 0.91408 0.90866 0.92536 0.92235 0.93938 0.93349 0.93785 0.91411 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.60 36.01 0.35 -0.92 16 2 C -0.07 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.44 9.70 -39.59 -0.38 -1.82 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.13 -1.42 9.70 -39.58 -0.38 -1.81 16 6 C -0.07 -0.81 5.88 -104.63 -0.62 -1.43 16 7 C -0.12 -1.16 9.19 36.00 0.33 -0.83 16 8 C -0.06 -0.81 4.37 -104.62 -0.46 -1.26 16 9 C -0.11 -1.19 3.08 -29.04 -0.09 -1.28 16 10 C 0.51 7.89 7.27 -10.99 -0.08 7.81 16 11 O -0.53 -10.53 15.40 5.56 0.09 -10.44 16 12 N -0.61 -9.12 3.00 -172.51 -0.52 -9.64 16 13 C 0.11 1.19 6.22 -3.53 -0.02 1.17 16 14 C -0.12 -1.46 5.72 -26.79 -0.15 -1.61 16 15 C -0.11 -1.84 2.57 -89.51 -0.23 -2.07 16 16 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 17 C -0.14 -2.46 6.56 -25.15 -0.17 -2.62 16 18 C 0.18 4.28 5.44 -1.92 -0.01 4.27 16 19 N -0.59 -14.96 3.37 -162.27 -0.55 -15.51 16 20 C -0.23 -6.39 9.90 -15.06 -0.15 -6.54 16 21 H 0.08 2.17 7.42 -52.49 -0.39 1.78 16 22 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 23 N -0.92 -27.07 10.49 55.49 0.58 -26.48 16 24 Si 0.91 22.55 29.56 -169.99 -5.02 17.53 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.16 3.19 2.80 -67.32 -0.19 3.00 16 29 H 0.02 0.54 7.93 -51.93 -0.41 0.13 16 30 C 0.12 2.22 5.73 -3.75 -0.02 2.19 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.62 5.94 -51.93 -0.31 0.31 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.07 0.73 6.37 -51.93 -0.33 0.40 16 40 H 0.10 0.89 6.55 -51.92 -0.34 0.55 16 41 H 0.10 0.95 5.34 -51.93 -0.28 0.67 16 42 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 49 H 0.05 1.27 7.45 -51.93 -0.39 0.88 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 52 H 0.09 2.00 6.80 -51.93 -0.35 1.65 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -33.44 397.28 -11.35 -44.79 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.53 Total: 0.84 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.38 Total: -7.07 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.48 Total: -51.63 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.44 -11.35 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.055 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds