Wall clock time and date at job start Wed Apr 1 2020 01:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38224 * 120.00345 * 2 1 4 4 C 1.38237 * 119.99855 * 180.23256 * 3 2 1 5 5 C 1.38234 * 120.00153 * 359.80687 * 4 3 2 6 6 C 1.38236 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00069 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99877 * 359.97221 * 6 5 4 9 9 C 1.50695 * 119.99954 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47364 * 90.00047 * 9 8 6 11 11 O 1.21281 * 119.99535 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99825 * 180.02562 * 10 9 8 13 13 C 1.46586 * 119.75557 * 359.97438 * 12 10 9 14 14 C 1.53890 * 110.71598 * 227.71652 * 13 12 10 15 15 C 1.51982 * 107.28277 * 308.19346 * 14 13 12 16 16 H 1.08994 * 111.01714 * 303.47638 * 15 14 13 17 17 C 1.53700 * 115.00185 * 176.26093 * 15 14 13 18 18 C 1.55297 * 101.81655 * 206.53992 * 17 15 14 19 19 N 1.48147 * 107.04350 * 22.44190 * 18 17 15 20 20 C 1.36939 * 126.40192 * 184.99895 * 19 18 17 21 21 H 1.07995 * 120.00534 * 173.05890 * 20 19 18 22 22 C 1.38819 * 119.99649 * 353.06757 * 20 19 18 23 23 N 1.31621 * 119.99828 * 5.76528 * 22 20 19 24 24 Si 1.86797 * 119.99917 * 185.76649 * 22 20 19 25 25 H 1.48495 * 109.47255 * 94.98425 * 24 22 20 26 26 H 1.48504 * 109.47343 * 214.98676 * 24 22 20 27 27 H 1.48508 * 109.47281 * 334.98663 * 24 22 20 28 28 C 1.46084 * 107.65088 * 4.30852 * 19 18 17 29 29 H 1.09000 * 109.03097 * 87.42179 * 28 19 18 30 30 C 1.47800 * 119.74742 * 179.72536 * 12 10 9 31 31 H 1.09001 * 109.46821 * 270.21408 * 1 2 3 32 32 H 1.09005 * 109.46690 * 30.20850 * 1 2 3 33 33 H 1.08997 * 109.47615 * 150.20785 * 1 2 3 34 34 H 1.07999 * 120.00176 * 0.06108 * 3 2 1 35 35 H 1.07999 * 119.99863 * 179.83674 * 4 3 2 36 36 H 1.08005 * 120.00115 * 180.02562 * 5 4 3 37 37 H 1.09011 * 109.46960 * 269.97454 * 7 6 5 38 38 H 1.09002 * 109.47201 * 29.97229 * 7 6 5 39 39 H 1.08997 * 109.47437 * 149.97804 * 7 6 5 40 40 H 1.09007 * 109.47324 * 329.99752 * 9 8 6 41 41 H 1.09004 * 109.47514 * 210.00344 * 9 8 6 42 42 H 1.09001 * 109.23005 * 348.03337 * 13 12 10 43 43 H 1.09006 * 109.23163 * 107.39584 * 13 12 10 44 44 H 1.08998 * 109.88972 * 67.63275 * 14 13 12 45 45 H 1.08992 * 109.89825 * 188.67577 * 14 13 12 46 46 H 1.08999 * 110.96352 * 324.67002 * 17 15 14 47 47 H 1.09005 * 110.96480 * 88.36875 * 17 15 14 48 48 H 1.09000 * 109.92408 * 141.79737 * 18 17 15 49 49 H 1.09001 * 109.91904 * 263.09486 * 18 17 15 50 50 H 0.96996 * 119.99475 * 180.02562 * 23 22 20 51 51 H 1.09004 * 110.06460 * 247.98734 * 30 12 10 52 52 H 1.08997 * 110.06697 * 9.55116 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1969 -0.0049 5 6 4.2717 -0.0003 -0.0057 6 6 3.5805 -1.1974 -0.0011 7 6 4.3338 -2.5025 -0.0026 8 6 2.1981 -1.1973 0.0049 9 6 1.4445 -2.5023 0.0104 10 6 1.1994 -2.9348 1.4331 11 8 1.5979 -2.2509 2.3519 12 7 0.5383 -4.0821 1.6841 13 6 0.0596 -4.9048 0.5694 14 6 -1.4069 -5.3170 0.7876 15 6 -1.5019 -5.9306 2.1748 16 1 -0.8107 -6.7667 2.2805 17 6 -2.9205 -6.3263 2.6143 18 6 -2.8120 -6.2327 4.1607 19 7 -1.6791 -5.3270 4.4625 20 6 -1.1749 -5.0419 5.7033 21 1 -0.2743 -4.4535 5.7981 22 6 -1.8215 -5.5092 6.8394 23 7 -2.8522 -6.3195 6.7235 24 14 -1.2287 -4.9881 8.5324 25 1 -2.0184 -3.8187 8.9951 26 1 -1.4041 -6.1127 9.4862 27 1 0.2079 -4.6184 8.4618 28 6 -1.1817 -4.8018 3.1933 29 1 -1.7457 -3.9058 2.9339 30 6 0.3063 -4.5041 3.0815 31 1 -0.3633 0.0038 1.0277 32 1 -0.3633 0.8882 -0.5171 33 1 -0.3634 -0.8918 -0.5106 34 1 1.6583 2.1324 0.0010 35 1 4.1206 2.1322 -0.0075 36 1 5.3517 -0.0004 -0.0091 37 1 4.5107 -2.8188 -1.0307 38 1 5.2887 -2.3714 0.5065 39 1 3.7471 -3.2613 0.5151 40 1 2.0313 -3.2629 -0.5047 41 1 0.4899 -2.3728 -0.4996 42 1 0.1384 -4.3354 -0.3568 43 1 0.6766 -5.8002 0.4930 44 1 -2.0518 -4.4404 0.7248 45 1 -1.7022 -6.0491 0.0360 46 1 -3.6583 -5.6209 2.2319 47 1 -3.1568 -7.3430 2.3003 48 1 -3.7343 -5.8243 4.5738 49 1 -2.6197 -7.2204 4.5799 50 1 -3.3042 -6.6457 7.5173 51 1 0.8870 -5.3996 3.3030 52 1 0.5804 -3.7007 3.7652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042081073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:33 Heat of formation + Delta-G solvation = -6.347383 kcal Electronic energy + Delta-G solvation = -30951.521976 eV Core-core repulsion = 27108.281916 eV Total energy + Delta-G solvation = -3843.240061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -41.68477 -40.56371 -39.35897 -36.80304 -34.67499 -34.47168 -34.32264 -32.83906 -31.31520 -30.26195 -29.44857 -27.52440 -27.49155 -26.52280 -25.12318 -23.51494 -22.26255 -21.80826 -21.59078 -21.12044 -19.90465 -18.68868 -18.06916 -17.26136 -17.19177 -16.86432 -16.50545 -16.12010 -15.74219 -15.66993 -15.37776 -15.21047 -14.91451 -14.52174 -14.25817 -14.06653 -13.98836 -13.82841 -13.79693 -13.76702 -13.56367 -13.49147 -13.28515 -13.12076 -13.04657 -12.76900 -12.54312 -12.47849 -12.39180 -12.11060 -12.00106 -11.78678 -11.75578 -11.68832 -11.53350 -11.32574 -11.01459 -10.85650 -10.74251 -9.65393 -9.47435 -9.40288 -8.90619 -7.90162 -5.23487 0.43674 0.50433 1.40528 1.42267 1.51070 1.65409 1.98083 2.46848 2.84104 3.28886 3.47105 3.64726 3.72762 3.88835 3.90118 3.97983 3.98581 4.05647 4.12310 4.21012 4.29894 4.31456 4.34887 4.42683 4.46407 4.56190 4.58041 4.62634 4.75338 4.75997 4.79628 4.80970 4.82736 4.86296 4.92540 4.94927 4.98648 5.00804 5.13811 5.17868 5.25075 5.30737 5.35829 5.38353 5.52805 5.61349 5.61403 5.66663 5.67735 5.75784 5.76895 6.17263 6.17865 6.47572 7.06586 7.22092 7.74734 8.41288 9.21486 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003056 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.249368 B = 9159.597982 C =10152.379833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.114 4.114 8 C -0.086 4.086 9 C -0.095 4.095 10 C 0.510 3.490 11 O -0.585 6.585 12 N -0.606 5.606 13 C 0.100 3.900 14 C -0.111 4.111 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.122 4.122 18 C 0.182 3.818 19 N -0.615 5.615 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.968 3.032 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.273 1.273 28 C 0.148 3.852 29 H 0.008 0.992 30 C 0.130 3.870 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.003 0.997 49 H 0.015 0.985 50 H 0.248 0.752 51 H 0.062 0.938 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 6.871 -24.493 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.170 4.170 8 C -0.087 4.087 9 C -0.134 4.134 10 C 0.299 3.701 11 O -0.465 6.465 12 N -0.339 5.339 13 C -0.021 4.021 14 C -0.150 4.150 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.160 4.160 18 C 0.058 3.942 19 N -0.340 5.340 20 C -0.367 4.367 21 H 0.090 0.910 22 C -0.254 4.254 23 N -0.595 5.595 24 Si 0.797 3.203 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.198 1.198 28 C 0.040 3.960 29 H 0.025 0.975 30 C 0.006 3.994 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.022 0.978 49 H 0.033 0.967 50 H 0.057 0.943 51 H 0.080 0.920 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.620 7.164 -23.798 26.650 hybrid contribution -0.025 0.294 2.164 2.184 sum 9.596 7.458 -21.634 24.814 Atomic orbital electron populations 1.20880 0.90602 1.04125 1.01714 1.20006 0.96780 0.93034 0.98747 1.21240 0.94857 0.97791 1.02109 1.21401 0.94389 0.98798 0.99357 1.21250 1.00605 0.91987 1.02021 1.20032 0.93230 0.96583 0.98564 1.20844 0.99617 0.93255 1.03329 1.19242 0.93310 0.93873 1.02256 1.20825 1.03691 0.96388 0.92474 1.21235 0.76870 0.79696 0.92274 1.90705 1.52620 1.54663 1.48486 1.48364 1.55885 1.22946 1.06739 1.22143 0.95277 0.96209 0.88521 1.21827 0.96076 1.01553 0.95512 1.22184 0.96932 0.96996 0.95385 0.90706 1.22592 0.96714 1.02050 0.94599 1.21335 0.88727 0.92237 0.91941 1.44615 1.36080 1.52434 1.00907 1.19300 1.06520 1.27627 0.83284 0.91020 1.25548 0.98461 1.00275 1.01088 1.70148 1.24495 1.36823 1.28018 0.85207 0.77861 0.77115 0.80107 1.21609 1.21488 1.19818 1.21304 0.92517 0.95267 0.86924 0.97491 1.21287 0.96444 0.98882 0.82811 0.93161 0.89770 0.90001 0.84799 0.84144 0.84542 0.88657 0.91223 0.92719 0.85173 0.85347 0.86164 0.89688 0.91443 0.86690 0.91145 0.89454 0.97849 0.96673 0.94316 0.91992 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.60 71.24 0.68 -1.64 16 2 C -0.09 -2.01 5.88 -19.87 -0.12 -2.12 16 3 C -0.14 -3.08 9.70 22.27 0.22 -2.86 16 4 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 5 C -0.14 -2.93 9.70 22.27 0.22 -2.72 16 6 C -0.08 -1.89 5.88 -19.87 -0.12 -2.00 16 7 C -0.11 -2.02 9.19 71.23 0.65 -1.37 16 8 C -0.09 -2.03 4.37 -19.87 -0.09 -2.12 16 9 C -0.09 -1.84 3.08 29.10 0.09 -1.75 16 10 C 0.51 15.16 7.27 87.66 0.64 15.80 16 11 O -0.59 -23.93 15.40 -3.03 -0.05 -23.98 16 12 N -0.61 -17.23 3.00 -818.10 -2.46 -19.68 16 13 C 0.10 1.74 6.22 86.66 0.54 2.28 16 14 C -0.11 -2.18 5.72 30.56 0.17 -2.00 16 15 C -0.10 -2.94 2.57 -10.08 -0.03 -2.97 16 16 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 17 C -0.12 -4.15 6.56 31.62 0.21 -3.94 16 18 C 0.18 9.01 5.44 86.85 0.47 9.48 16 19 N -0.62 -32.36 3.37 -667.32 -2.25 -34.60 16 20 C -0.24 -13.94 9.90 84.03 0.83 -13.11 16 21 H 0.07 4.18 7.42 -2.91 -0.02 4.16 16 22 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 23 N -0.95 -58.14 10.49 21.65 0.23 -57.91 16 24 Si 0.97 48.03 29.56 68.60 2.03 50.06 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 28 C 0.15 6.11 2.80 45.61 0.13 6.24 16 29 H 0.01 0.34 7.93 -2.39 -0.02 0.32 16 30 C 0.13 5.05 5.73 85.85 0.49 5.54 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 33 H 0.08 1.31 5.94 -2.39 -0.01 1.30 16 34 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 39 H 0.05 1.09 6.37 -2.39 -0.02 1.08 16 40 H 0.13 1.73 6.55 -2.38 -0.02 1.71 16 41 H 0.13 1.80 5.34 -2.38 -0.01 1.79 16 42 H 0.12 1.18 5.84 -2.39 -0.01 1.16 16 43 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.39 7.98 -2.39 -0.02 1.37 16 45 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 47 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 48 H 0.00 0.18 7.59 -2.39 -0.02 0.16 16 49 H 0.01 0.83 7.45 -2.39 -0.02 0.81 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 52 H 0.05 2.38 6.80 -2.39 -0.02 2.37 16 Total: -1.00 -80.37 397.28 4.09 -76.28 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.90 Total: 14.42 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.69 Total: -4.58 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.48 Total: -112.20 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -80.37 4.09 -76.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042081073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.929 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds