Wall clock time and date at job start Wed Apr 1 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99923 * 265.25122 * 3 2 1 5 5 C 1.38217 * 119.99825 * 180.27974 * 4 3 2 6 6 C 1.38254 * 119.99793 * 359.74167 * 5 4 3 7 7 C 1.38209 * 120.00214 * 359.97438 * 6 5 4 8 8 C 1.38218 * 120.00389 * 84.99575 * 3 2 1 9 9 C 1.50699 * 119.99482 * 359.97438 * 8 3 2 10 10 C 1.50709 * 109.46992 * 84.72757 * 9 8 3 11 11 O 1.21271 * 120.00133 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99722 * 179.97438 * 10 9 8 13 13 C 1.44753 * 117.18615 * 359.97438 * 12 10 9 14 14 C 1.51494 * 111.70651 * 213.76118 * 13 12 10 15 15 C 1.49434 * 114.09170 * 317.18318 * 14 13 12 16 16 H 1.09001 * 107.67682 * 165.90054 * 15 14 13 17 17 C 1.54520 * 112.97407 * 284.22508 * 15 14 13 18 18 C 1.55246 * 100.54502 * 166.31950 * 17 15 14 19 19 N 1.47475 * 105.05580 * 323.80401 * 18 17 15 20 20 C 1.36939 * 125.66786 * 200.96809 * 19 18 17 21 21 H 1.08003 * 119.99981 * 169.79762 * 20 19 18 22 22 C 1.38810 * 119.99556 * 349.79995 * 20 19 18 23 23 N 1.31615 * 120.00459 * 350.28224 * 22 20 19 24 24 Si 1.86806 * 119.99490 * 170.28816 * 22 20 19 25 25 H 1.48497 * 109.47034 * 94.54242 * 24 22 20 26 26 H 1.48498 * 109.46650 * 214.54238 * 24 22 20 27 27 H 1.48499 * 109.47058 * 334.53848 * 24 22 20 28 28 C 1.48296 * 108.66829 * 20.94491 * 19 18 17 29 29 H 1.08997 * 108.75415 * 121.12521 * 28 19 18 30 30 C 1.43777 * 117.18374 * 180.02562 * 12 10 9 31 31 H 1.09001 * 109.47075 * 60.00190 * 1 2 3 32 32 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47370 * 300.00645 * 1 2 3 34 34 H 1.08997 * 109.47370 * 239.99355 * 2 1 3 35 35 H 1.08997 * 109.46632 * 119.99606 * 2 1 3 36 36 H 1.07997 * 119.99768 * 0.04184 * 4 3 2 37 37 H 1.08000 * 119.99462 * 179.76663 * 5 4 3 38 38 H 1.08008 * 119.99616 * 180.02562 * 6 5 4 39 39 H 1.08005 * 119.99794 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47455 * 324.72473 * 9 8 3 41 41 H 1.09001 * 109.46968 * 204.72296 * 9 8 3 42 42 H 1.09001 * 109.03282 * 93.19471 * 13 12 10 43 43 H 1.08998 * 109.03760 * 334.33805 * 13 12 10 44 44 H 1.09001 * 108.55668 * 195.98738 * 14 13 12 45 45 H 1.09001 * 108.55599 * 78.37589 * 14 13 12 46 46 H 1.09004 * 111.20289 * 284.13972 * 17 15 14 47 47 H 1.09008 * 111.20113 * 48.49367 * 17 15 14 48 48 H 1.09001 * 110.32906 * 82.69498 * 18 17 15 49 49 H 1.09002 * 110.32639 * 204.91251 * 18 17 15 50 50 H 0.97002 * 120.00146 * 180.02562 * 23 22 20 51 51 H 1.09003 * 108.06148 * 279.06813 * 30 12 10 52 52 H 1.08999 * 108.06106 * 35.59431 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1933 5 6 2.8224 3.3406 -1.1928 6 6 2.9598 4.0252 0.0005 7 6 2.6305 3.4087 1.1928 8 6 2.1643 2.1072 1.1924 9 6 1.8052 1.4349 2.4924 10 6 2.9819 0.6320 2.9845 11 8 4.0104 0.6077 2.3425 12 7 2.8910 -0.0590 4.1380 13 6 1.6357 0.0133 4.8552 14 6 1.8433 -0.0399 6.3549 15 6 2.8487 -1.0536 6.7959 16 1 3.1028 -0.8380 7.8338 17 6 2.3084 -2.5004 6.7457 18 6 3.6296 -3.3023 6.8923 19 7 4.6365 -2.5207 6.1505 20 6 5.8198 -3.0044 5.6597 21 1 6.4142 -2.4000 4.9904 22 6 6.2554 -4.2715 6.0224 23 7 5.6377 -4.9310 6.9793 24 14 7.7186 -5.0406 5.1522 25 1 8.9549 -4.7696 5.9290 26 1 7.5143 -6.5074 5.0427 27 1 7.8496 -4.4563 3.7933 28 6 4.1542 -1.1241 6.0239 29 1 4.8830 -0.4584 6.4865 30 6 4.0496 -0.8036 4.5507 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.2486 1.5047 -2.1254 37 1 3.0790 3.8226 -2.1246 38 1 3.3238 5.0421 0.0008 39 1 2.7374 3.9437 2.1249 40 1 0.9535 0.7730 2.3361 41 1 1.5463 2.1914 3.2333 42 1 1.0054 -0.8233 4.5538 43 1 1.1330 0.9458 4.5988 44 1 0.8889 -0.2685 6.8293 45 1 2.1694 0.9430 6.6950 46 1 1.6329 -2.6981 7.5781 47 1 1.8252 -2.7078 5.7909 48 1 3.9102 -3.3811 7.9426 49 1 3.5213 -4.2940 6.4531 50 1 5.9423 -5.8163 7.2330 51 1 4.0614 -1.7437 3.9991 52 1 4.9354 -0.2362 4.2650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042112084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:42 Heat of formation + Delta-G solvation = 12.828390 kcal Electronic energy + Delta-G solvation = -30959.921871 eV Core-core repulsion = 27117.513334 eV Total energy + Delta-G solvation = -3842.408537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.65179 -39.49047 -38.06962 -35.38038 -34.40594 -33.11503 -32.74317 -31.51426 -29.79823 -29.44057 -28.57159 -27.45547 -24.76346 -24.15053 -23.74408 -22.67839 -22.09058 -20.80753 -20.38226 -19.48098 -17.46012 -17.12105 -16.93767 -16.47949 -16.23806 -15.48763 -15.23682 -15.05601 -14.79672 -14.66333 -14.00495 -13.96829 -13.82313 -13.63045 -13.46985 -13.10410 -12.96638 -12.93252 -12.56727 -12.30533 -12.17313 -11.98666 -11.86424 -11.66650 -11.57703 -11.39179 -11.24818 -11.12920 -10.86937 -10.76210 -10.75902 -10.74147 -10.08520 -9.96901 -9.85897 -9.70385 -9.60994 -9.57546 -8.82823 -8.62824 -8.57430 -8.17506 -6.85792 -5.75016 -3.08123 1.29489 1.36904 2.84314 3.29375 3.41423 3.47582 3.50947 3.76148 4.48317 4.54526 4.65834 4.73567 4.79436 4.87844 4.94641 4.96946 5.05235 5.08975 5.14599 5.24599 5.28712 5.35823 5.40512 5.44461 5.48962 5.55469 5.57024 5.63288 5.76719 5.78591 5.82828 5.86817 5.95423 5.98343 6.04248 6.05972 6.15264 6.17956 6.22262 6.42860 6.45482 6.46344 6.55417 6.61877 6.62709 6.80534 6.96732 6.99911 7.11024 7.48937 7.58896 7.64591 7.79327 8.22560 8.46570 9.18586 9.79209 10.45752 11.37887 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.003081 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.601607 B = 9084.620384 C =10019.945290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.106 4.106 10 C 0.500 3.500 11 O -0.530 6.530 12 N -0.590 5.590 13 C 0.111 3.889 14 C -0.112 4.112 15 C -0.092 4.092 16 H 0.066 0.934 17 C -0.141 4.141 18 C 0.175 3.825 19 N -0.596 5.596 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.163 3.837 29 H 0.039 0.961 30 C 0.107 3.893 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.252 0.748 51 H 0.069 0.931 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 15.290 -9.380 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.287 3.713 11 O -0.407 6.407 12 N -0.323 5.323 13 C -0.012 4.012 14 C -0.150 4.150 15 C -0.111 4.111 16 H 0.084 0.916 17 C -0.180 4.180 18 C 0.050 3.950 19 N -0.321 5.321 20 C -0.358 4.358 21 H 0.094 0.906 22 C -0.201 4.201 23 N -0.564 5.564 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.055 3.945 29 H 0.057 0.943 30 C -0.017 4.017 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.272 15.004 -9.621 22.834 hybrid contribution 0.936 -0.457 -0.241 1.069 sum -13.336 14.547 -9.862 22.062 Atomic orbital electron populations 1.21764 0.94723 1.01849 1.01978 1.20579 0.95894 0.92872 1.03407 1.19676 0.98239 0.95650 0.92610 1.20972 1.00237 0.95185 0.97326 1.21078 0.99913 0.94886 0.97956 1.21038 1.00884 0.99914 0.92576 1.20954 0.98712 0.94544 0.98112 1.19163 0.99718 0.93940 0.93224 1.20828 0.98095 0.99970 0.95654 1.20543 0.89307 0.80053 0.81401 1.90721 1.31038 1.63045 1.55859 1.46819 1.14263 1.48745 1.22440 1.20905 0.85602 1.01587 0.93149 1.20618 1.00052 0.99677 0.94654 1.20600 0.94874 0.95572 1.00035 0.91584 1.23028 0.99506 0.95102 1.00346 1.21413 0.83624 0.94188 0.95775 1.44964 1.19052 1.02612 1.65477 1.19018 0.96289 0.99072 1.21428 0.90552 1.24794 0.99051 0.98086 0.98161 1.69966 1.42587 1.13666 1.30194 0.86164 0.82112 0.78587 0.79340 1.21590 1.21621 1.20455 1.20256 0.93631 0.89265 0.91339 0.94304 1.21305 0.86053 0.95963 0.98370 0.92578 0.92222 0.92560 0.90973 0.90807 0.86292 0.86356 0.86298 0.86318 0.87949 0.88255 0.92233 0.90589 0.90597 0.92081 0.92081 0.92345 0.95093 0.92128 0.93749 0.91278 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.72 37.16 0.36 -0.90 16 2 C -0.09 -1.01 5.38 -27.88 -0.15 -1.16 16 3 C -0.06 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.34 9.68 -39.58 -0.38 -1.72 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 6 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 7 C -0.11 -1.22 9.68 -39.59 -0.38 -1.61 16 8 C -0.06 -0.74 4.37 -104.63 -0.46 -1.20 16 9 C -0.11 -1.18 3.52 -29.03 -0.10 -1.29 16 10 C 0.50 7.85 6.72 -10.98 -0.07 7.78 16 11 O -0.53 -10.66 15.36 5.57 0.09 -10.58 16 12 N -0.59 -9.21 3.12 -179.24 -0.56 -9.77 16 13 C 0.11 1.29 5.89 -5.74 -0.03 1.25 16 14 C -0.11 -1.33 5.44 -29.25 -0.16 -1.49 16 15 C -0.09 -1.49 2.44 -92.17 -0.23 -1.72 16 16 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 17 C -0.14 -2.48 6.54 -24.74 -0.16 -2.64 16 18 C 0.17 4.11 5.37 -2.32 -0.01 4.10 16 19 N -0.60 -14.88 2.95 -163.86 -0.48 -15.37 16 20 C -0.23 -6.40 9.60 -15.06 -0.14 -6.55 16 21 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 22 C 0.00 -0.12 5.41 -17.43 -0.09 -0.21 16 23 N -0.92 -26.84 10.71 55.49 0.59 -26.25 16 24 Si 0.91 22.45 29.56 -169.99 -5.03 17.43 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.16 3.31 3.42 -68.48 -0.23 3.08 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 C 0.11 2.12 5.37 -6.43 -0.03 2.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 34 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.07 0.96 6.40 -51.93 -0.33 0.63 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.10 0.97 5.52 -51.93 -0.29 0.68 16 41 H 0.10 0.86 7.14 -51.93 -0.37 0.49 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.64 5.84 -51.93 -0.30 0.34 16 44 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.01 8.09 -51.92 -0.42 0.59 16 48 H 0.03 0.80 7.95 -51.93 -0.41 0.38 16 49 H 0.06 1.60 7.16 -51.93 -0.37 1.22 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.07 1.59 7.53 -51.93 -0.39 1.19 16 52 H 0.07 1.41 7.25 -51.93 -0.38 1.03 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -33.10 398.00 -11.67 -44.77 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.65 Total: 0.65 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.62 Total: -6.88 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.45 Total: -51.38 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.10 -11.67 -44.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042112084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.595 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds